genome.fa.s157.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  53  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12242157--12242295	51	2.7	49	80	12	138	51	2	0	46	1.16
12242200--12242335	28	4.8	28	70	23	104	54	0	0	45	0.99
12242228--12242518	18	17.1	18	70	19	94	51	1	0	46	1.12
12242219--12242397	15	11.5	15	68	25	90	55	1	0	42	1.14
12242352--12242410	11	5.9	10	69	15	50	61	1	0	37	1.07
12242402--12242518	34	3.5	35	77	13	113	45	0	0	53	1.06
12242446--12242498	17	3.1	17	78	7	63	41	0	0	58	0.98
12242635--12242663	14	2.0	15	93	6	51	48	0	0	51	1.00
12245928--12245958	16	1.9	16	93	0	53	22	6	3	67	1.28
12250183--12250236	22	2.3	24	90	9	85	46	0	0	53	1.00
12254531--12254576	24	1.9	24	100	0	92	30	19	2	47	1.61
12265874--12265922	15	3.3	15	97	0	89	40	0	12	46	1.41
12265954--12265984	15	2.1	15	93	0	53	38	6	9	45	1.63
12266540--12266613	37	2.0	37	91	0	121	55	8	2	33	1.44
12267586--12267620	17	2.1	17	100	0	70	34	31	17	17	1.93
12267584--12267744	81	2.0	81	90	0	250	26	34	16	22	1.95
12267644--12267956	104	3.0	104	92	0	518	26	33	16	23	1.96
12267892--12268013	64	1.9	64	88	3	183	27	32	14	25	1.95
12267788--12268061	87	3.2	87	69	12	251	27	32	16	24	1.96
12267997--12268043	23	2.0	23	91	0	76	23	29	19	27	1.98
12267788--12268124	168	2.0	168	88	1	505	27	32	16	24	1.96
12268101--12268147	23	2.0	23	100	0	94	21	31	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12267956--12268160	104	2.0	104	92	0	338	27	31	16	24	1.96
12268060--12268233	87	2.0	86	89	1	267	24	31	18	25	1.97
12268188--12268256	23	3.0	23	91	4	113	23	30	20	26	1.98
12268101--12268342	109	2.2	109	98	0	466	23	30	19	26	1.98
12268297--12268342	22	2.0	23	87	4	67	23	30	19	26	1.98
12268423--12268457	17	2.1	17	94	0	61	34	28	17	20	1.95
12268320--12268553	81	2.9	81	90	0	353	27	30	17	24	1.97
12268504--12268539	17	2.1	17	89	0	54	30	27	19	22	1.98
12268729--12268782	25	2.2	25	96	0	99	38	18	9	33	1.83
12272518--12272575	23	2.4	25	83	11	68	29	10	13	46	1.77
12273015--12273076	30	2.0	31	87	3	90	38	8	3	50	1.48
12273391--12273461	26	2.8	25	80	10	72	40	11	1	46	1.48
12273592--12273878	128	2.2	129	83	3	355	43	9	4	41	1.59
12275087--12275127	22	2.0	20	85	9	55	70	4	0	24	1.06
12275723--12275773	21	2.5	21	96	3	95	50	0	0	49	1.00
12278241--12278300	23	2.6	23	83	2	66	38	3	3	55	1.33
12278809--12279149	148	2.3	147	76	11	356	45	9	6	38	1.62
12281215--12281285	35	2.0	36	91	2	117	32	11	2	53	1.51
12281223--12281304	35	2.3	35	83	8	94	28	9	4	57	1.51
12283748--12283790	2	22.0	2	95	4	79	51	0	0	48	1.00
12289923--12289972	25	2.0	25	88	0	73	40	4	2	54	1.31
12289921--12289981	25	2.6	22	80	12	68	39	3	1	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12290064--12290172	37	3.0	38	71	11	93	48	1	1	47	1.23
12290127--12290181	26	2.3	23	71	17	56	50	1	0	47	1.11
12291455--12291507	26	2.0	26	96	0	97	33	18	20	26	1.96
12293898--12293924	14	1.9	14	100	0	54	51	7	14	25	1.68
12297484--12297529	3	15.3	3	100	0	92	32	0	0	67	0.91
12303972--12304012	21	2.0	21	85	9	57	41	0	14	43	1.45
12304219--12304258	19	2.1	19	85	0	53	50	2	7	40	1.44
12304700--12304740	8	5.0	8	85	5	55	24	0	0	75	0.80
12305425--12305536	6	17.3	6	74	12	71	71	3	1	23	1.11
12305444--12305515	14	5.1	14	79	0	72	76	2	1	19	0.99
12305432--12305515	28	3.1	27	84	6	98	75	2	1	21	0.99
12305791--12306107	44	7.2	44	69	13	156	38	15	14	32	1.87
12305802--12305929	43	2.9	43	76	9	116	37	14	17	31	1.89
12307346--12307379	11	3.2	10	88	12	50	8	2	2	85	0.80
12311939--12311987	25	2.0	25	87	0	71	16	16	16	51	1.78
12312021--12312055	18	1.9	18	88	0	52	25	2	2	68	1.17
12312576--12312655	10	8.6	10	67	25	50	6	13	1	78	0.99
12312575--12312655	19	4.3	20	67	19	59	6	14	1	77	1.02
12312943--12312971	12	2.4	12	100	0	58	48	0	0	51	1.00
12312957--12313045	5	17.4	5	90	4	142	40	0	1	58	1.05
12313808--12313859	27	2.0	25	85	7	68	46	5	3	44	1.45
12314451--12314494	14	3.1	14	86	3	52	77	2	15	4	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12315076--12315119	8	5.2	8	78	10	52	77	0	15	6	0.97
12315070--12315119	17	2.9	17	79	8	57	76	0	16	8	1.02
12315618--12315676	29	2.0	29	84	12	77	47	1	3	47	1.29
12316700--12316929	115	2.0	115	82	5	281	38	13	2	46	1.57
12316950--12317012	31	2.0	31	84	0	81	36	17	4	41	1.71
12323590--12323624	2	17.5	2	100	0	70	0	48	0	51	1.00
12327040--12327147	12	8.8	12	85	6	117	33	9	0	57	1.31
12327073--12327147	3	25.0	3	94	0	132	33	2	0	64	1.08
12328991--12329024	10	3.4	10	87	0	50	35	0	2	61	1.11
12329302--12329373	37	1.9	37	88	5	110	37	13	8	40	1.75
12329402--12329560	65	2.4	66	81	6	196	44	10	8	37	1.69
12330044--12330230	103	1.8	102	79	3	214	42	13	15	27	1.85
12330245--12330315	36	1.9	38	88	5	110	33	11	8	46	1.70
12333527--12333570	10	4.5	10	80	5	54	70	2	0	27	0.99
12334487--12334783	129	2.3	129	85	1	371	43	11	3	41	1.58
12336476--12336527	22	2.4	22	87	9	72	69	0	5	25	1.10
12336484--12336575	12	7.4	12	70	16	53	70	3	5	20	1.21
12336496--12336582	27	3.2	26	73	17	61	71	3	3	21	1.16
12336518--12336575	26	2.3	27	88	8	86	70	5	3	20	1.21
12336881--12337092	36	6.8	30	74	18	100	48	30	3	17	1.63
12336841--12336985	36	3.9	36	84	7	184	48	31	4	15	1.64
12336966--12337126	30	5.6	29	76	9	116	48	31	0	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12337017--12337073	21	2.7	22	84	10	66	50	29	0	19	1.47
12339132--12339182	25	2.0	25	92	7	86	68	0	19	11	1.20
12339284--12339308	13	1.9	13	100	0	50	20	0	8	72	1.10
12340554--12340595	4	10.5	4	82	10	50	26	23	2	47	1.64
12342248--12342276	14	2.0	15	93	6	51	82	3	6	6	0.93
12343428--12343486	21	2.9	21	78	12	68	76	0	18	5	0.97
12344350--12344423	31	2.3	32	74	2	78	32	17	18	31	1.95
12344708--12344798	32	2.8	32	83	1	110	30	16	17	35	1.92
12345441--12345506	22	3.0	21	73	8	60	33	18	15	33	1.92
12345643--12345713	23	3.1	23	74	11	74	33	22	11	32	1.90
12345645--12345712	22	3.0	21	77	10	64	33	23	11	30	1.91
12346129--12346200	32	2.2	32	82	4	83	23	45	6	23	1.77
12347145--12347202	21	2.8	20	74	7	53	25	0	1	72	0.94
12347463--12347513	20	2.6	20	78	3	59	60	0	0	39	0.97
12347459--12347514	23	2.4	24	87	3	78	58	0	0	41	0.98
12347792--12347850	28	2.1	29	90	3	93	47	38	0	13	1.43
12347917--12347971	23	2.6	20	80	11	65	50	30	1	16	1.55
12349277--12349337	29	2.2	28	83	11	74	59	0	0	40	0.98
12349238--12349337	25	3.7	27	69	17	75	57	1	3	39	1.21
12352019--12352056	13	2.9	13	84	0	58	78	2	2	15	0.97
12352136--12352164	13	2.1	14	93	6	51	72	0	17	10	1.11
12353151--12353196	23	2.0	22	83	4	56	78	6	8	6	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12353151--12353196	22	2.1	22	83	0	56	78	6	8	6	1.10
12368947--12368996	15	2.9	18	71	17	52	30	8	0	62	1.24
12369371--12369448	22	3.6	22	79	5	70	55	8	8	26	1.61
12369395--12369448	21	2.5	21	84	3	63	51	9	9	29	1.65
12377690--12377735	23	2.0	23	100	0	92	47	21	17	13	1.81
12385544--12385602	23	2.5	23	86	5	73	25	3	5	66	1.28
12385572--12385608	17	2.2	17	90	0	56	21	0	5	72	1.04
12387119--12387152	14	2.6	14	90	9	54	5	5	0	88	0.64
12388603--12388694	17	5.6	16	72	20	66	22	2	30	44	1.65
12388649--12388701	17	3.2	17	91	2	81	24	0	26	49	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84