genome.fa.s157.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  55  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12532433--12532843	127	3.2	126	75	9	359	35	12	12	39	1.81
12532442--12532843	63	6.3	62	73	10	267	35	12	12	40	1.81
12533217--12533354	62	2.2	63	83	6	163	41	10	10	36	1.75
12533219--12533354	64	2.1	63	79	5	148	41	10	11	37	1.75
12536403--12536440	20	1.9	20	88	0	58	15	0	5	78	0.91
12541086--12541115	2	15.0	2	100	0	60	0	50	0	50	1.00
12542521--12542545	2	12.5	2	100	0	50	52	0	48	0	1.00
12553327--12553359	12	2.8	12	90	4	50	6	12	0	81	0.85
12557761--12557812	8	6.6	8	80	8	54	42	0	0	57	0.98
12557781--12557830	22	2.2	22	89	7	73	46	0	0	54	1.00
12563633--12563717	31	2.7	31	85	3	100	30	18	23	27	1.98
12563718--12563821	49	2.1	49	85	0	136	39	9	30	20	1.84
12563754--12563821	24	2.8	25	80	13	86	35	10	36	17	1.84
12563746--12563827	25	3.3	25	80	10	96	36	9	32	20	1.86
12564117--12564272	52	3.0	52	85	5	199	43	7	21	27	1.79
12564852--12564911	24	2.5	25	86	5	79	35	11	38	15	1.83
12565198--12565352	51	3.0	50	79	8	168	44	8	19	27	1.79
12566300--12566401	51	2.0	51	83	7	127	52	5	15	25	1.65
12566316--12566463	51	2.9	50	82	5	154	47	6	18	27	1.73
12567433--12567578	52	2.8	52	82	2	159	46	7	17	28	1.75
12568077--12568137	31	2.0	31	90	0	95	31	16	22	29	1.96
12570384--12570421	20	1.9	20	84	10	51	2	10	7	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12571218--12571269	26	2.0	26	81	7	61	15	19	13	51	1.75
12574784--12574812	2	14.5	2	100	0	58	51	0	0	48	1.00
12579049--12579099	26	1.9	27	84	11	70	27	0	0	72	0.85
12579975--12580034	20	2.9	22	73	12	54	56	3	6	33	1.42
12580529--12580609	36	2.2	36	100	0	162	50	0	0	49	1.00
12580532--12580601	9	7.8	9	76	10	72	54	0	0	45	0.99
12594288--12594406	63	1.9	63	83	0	157	43	8	20	27	1.80
12595647--12595674	2	14.0	2	100	0	56	50	0	0	50	1.00
12604176--12604335	80	2.0	81	87	1	232	48	21	8	21	1.76
12610559--12610754	108	1.8	107	89	1	311	34	21	12	31	1.91
12613120--12613237	61	1.9	61	80	10	134	45	1	14	38	1.55
12614006--12614075	35	2.0	35	88	0	104	35	8	2	52	1.47
12615045--12615106	28	2.2	28	83	8	74	70	8	20	0	1.12
12615064--12615115	14	3.8	13	76	20	52	65	9	23	1	1.32
12615707--12615808	34	3.1	31	81	14	107	36	6	16	40	1.76
12615881--12615913	17	2.0	17	94	5	59	39	6	0	54	1.25
12617138--12618203	161	6.6	161	80	4	968	42	15	10	32	1.80
12617109--12618300	483	2.5	482	80	5	1258	43	15	9	31	1.79
12623883--12624060	65	2.8	64	77	6	191	42	14	10	33	1.80
12623858--12624067	63	3.3	61	72	10	174	39	11	11	37	1.79
12630354--12630384	15	2.1	15	94	5	55	83	0	3	12	0.75
12636183--12636262	15	5.3	15	79	7	81	43	1	3	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12636183--12636262	30	2.7	30	82	7	92	43	1	3	51	1.27
12636294--12636318	13	1.9	13	100	0	50	56	0	0	44	0.99
12636314--12636357	20	2.1	21	83	4	54	56	6	6	29	1.51
12637172--12637225	24	2.3	23	81	9	63	50	3	5	40	1.44
12640229--12640277	14	3.6	14	74	20	50	55	0	2	42	1.11
12640293--12640353	31	2.0	31	86	0	86	40	0	4	54	1.22
12640316--12640392	24	3.1	24	81	5	73	48	1	1	49	1.17
12640355--12640400	24	2.0	23	87	8	67	54	2	4	39	1.32
12640686--12640716	7	4.4	7	100	0	62	51	0	0	48	1.00
12640893--12640929	18	2.1	19	90	10	60	64	0	0	35	0.94
12641419--12641510	34	2.8	33	83	6	98	41	1	0	57	1.06
12652276--12652315	18	2.2	19	86	13	57	47	2	0	50	1.14
12652451--12652870	131	3.2	130	78	10	399	33	13	8	44	1.74
12652622--12652921	64	4.6	61	71	15	174	33	12	10	43	1.77
12660122--12660203	41	2.0	41	83	4	103	42	10	14	31	1.81
12665989--12666047	18	3.2	18	80	7	66	76	1	5	16	1.05
12665989--12666040	12	4.3	12	81	13	54	75	1	3	19	1.06
12666885--12667013	5	25.6	5	71	16	79	53	4	4	37	1.43
12666951--12667013	5	12.2	5	88	6	81	55	4	1	38	1.31
12666951--12667033	42	2.0	42	88	4	123	53	8	1	37	1.39
12667196--12667659	110	4.2	110	80	3	380	42	16	20	20	1.89
12667296--12667666	55	6.7	55	77	1	285	42	17	19	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12674134--12674208	5	15.0	5	73	15	66	56	2	2	38	1.28
12674134--12674217	24	3.3	25	77	12	75	58	2	2	36	1.24
12674107--12674216	43	2.6	43	80	9	111	58	1	5	34	1.32
12680486--12680552	29	2.4	28	80	9	75	34	7	0	58	1.26
12685567--12685636	21	3.3	21	69	0	59	24	20	25	30	1.99
12686031--12686055	9	2.8	9	100	0	50	88	12	0	0	0.53
12689508--12689565	28	2.1	28	96	0	107	27	12	10	50	1.72
12689885--12689957	9	8.0	9	71	13	51	42	1	0	56	1.08
12689882--12689928	17	2.5	19	86	13	71	46	0	0	53	1.00
12690943--12691012	4	18.0	4	73	5	63	22	2	4	70	1.19
12690956--12691012	15	3.8	14	77	15	53	22	1	5	70	1.17
12702166--12702284	54	2.2	54	87	1	168	21	22	19	36	1.95
12704786--12704843	22	2.7	21	79	10	62	60	1	3	34	1.24
12705052--12705083	17	1.9	16	93	6	55	37	6	9	46	1.61
12711386--12711426	17	2.2	17	87	12	55	34	0	0	65	0.93
12711481--12711519	21	1.9	20	89	5	60	69	0	0	30	0.89
12712023--12712067	22	2.0	22	82	0	54	62	8	13	15	1.54
12717371--12717423	8	6.6	8	93	0	61	64	0	0	35	0.94
12717373--12717407	4	8.8	4	93	0	61	71	0	0	28	0.86
12717359--12717426	4	17.0	4	87	0	55	61	1	0	36	1.05
12720954--12720995	19	2.2	19	83	8	50	54	0	0	45	0.99
12725681--12726263	279	2.1	281	84	6	763	36	15	14	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12726772--12726935	72	2.5	63	73	21	156	42	11	11	34	1.78
12726794--12726934	72	2.0	72	91	2	230	41	10	12	35	1.77
12726512--12727205	365	1.9	366	81	4	855	38	12	13	35	1.83
12726892--12727490	293	2.0	293	83	4	744	37	12	14	34	1.85
12735182--12735228	24	2.0	24	83	8	60	55	0	2	42	1.12
12738325--12738387	33	1.9	32	87	3	90	42	1	3	52	1.27
12750186--12750220	17	2.1	17	94	0	61	31	20	11	37	1.88
12753789--12753832	22	2.0	22	86	0	61	36	9	11	43	1.72
12756708--12756792	2	44.5	2	70	13	54	48	3	45	2	1.32
12756708--12756751	22	1.9	22	86	9	61	54	0	43	2	1.12
12762703--12762751	20	2.5	19	73	3	53	61	0	6	32	1.21
12764845--12764905	29	2.1	29	96	0	113	34	19	16	29	1.94
12767801--12767883	12	6.5	13	68	23	52	72	0	22	4	1.04
12767818--12767871	19	2.9	18	78	13	56	70	0	24	5	1.08
12768095--12768154	20	3.0	19	81	13	68	78	1	11	8	1.03
12770109--12770149	17	2.5	16	84	4	55	68	4	9	17	1.35
12772021--12772472	94	4.8	92	76	5	390	31	7	15	46	1.73
12772194--12772265	24	3.0	24	63	15	58	33	8	12	45	1.72
12772021--12772419	140	2.8	138	84	4	480	31	7	14	46	1.72
12772021--12772447	46	9.1	47	77	6	350	31	7	14	46	1.73
12772126--12772472	140	2.5	141	83	6	393	31	7	15	45	1.74
12772485--12772528	22	2.0	21	86	4	61	72	11	2	13	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12772603--12772646	16	2.6	16	89	10	61	79	11	4	4	1.02
12774485--12774518	17	2.0	17	88	11	52	64	2	8	23	1.36
12774918--12775037	24	5.1	24	74	3	84	46	28	4	20	1.69
12774918--12775037	8	15.2	8	71	6	66	46	28	4	20	1.69
12777676--12777722	23	2.0	23	83	8	58	51	2	4	42	1.33
12782972--12783024	20	2.7	21	75	21	60	50	1	1	45	1.23
12786986--12787016	10	3.0	10	90	9	53	29	0	9	61	1.28
12788675--12788725	20	2.7	20	82	8	54	70	3	1	23	1.14
12790850--12790882	17	1.9	17	100	0	66	42	18	6	33	1.75
12790721--12791024	162	1.9	162	82	4	389	38	10	7	43	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84