genome.fa.s157.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  11  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1928576--1928733	52	3.0	52	83	4	176	25	24	8	41	1.84
1928760--1928799	11	3.6	11	93	0	71	50	27	0	22	1.50
1929026--1929080	26	2.1	26	83	12	69	21	32	3	41	1.71
1930289--1930318	2	15.0	2	100	0	60	50	0	0	50	1.00
1935827--1935889	22	3.0	21	73	11	58	41	0	1	57	1.08
1935827--1935891	23	3.0	22	75	18	66	41	0	1	56	1.08
1935835--1935896	22	2.8	21	77	18	63	35	0	1	62	1.05
1937543--1937984	221	2.0	218	85	4	586	41	14	19	25	1.89
1945819--1945845	12	2.2	12	100	0	54	59	0	7	33	1.25
1945871--1945898	4	7.0	4	100	0	56	75	0	25	0	0.81
1945973--1946007	5	6.6	5	90	9	52	57	2	37	2	1.29
1946737--1946762	2	13.0	2	100	0	52	50	0	0	50	1.00
1950160--1950272	60	1.9	59	87	1	163	45	6	2	46	1.42
1957768--1957853	23	3.6	22	75	18	66	38	0	0	61	0.96
1957771--1957843	27	3.0	24	78	17	71	36	0	0	63	0.95
1958625--1959459	419	2.0	413	91	3	1363	38	10	13	37	1.78
1959577--1959607	15	2.1	15	100	0	62	45	6	0	48	1.28
1960831--1960920	26	3.5	24	76	7	65	48	11	3	36	1.55
1960972--1961010	20	2.0	20	89	0	60	53	17	5	23	1.63
1961231--1961400	21	8.3	21	71	13	131	50	14	6	28	1.67
1961231--1961408	41	4.3	41	88	0	239	51	14	6	28	1.66
1961231--1961433	20	10.4	20	70	20	144	50	13	6	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1961414--1961569	32	4.6	33	68	18	106	54	10	5	28	1.58
1961471--1961509	20	2.0	20	84	0	51	51	7	7	33	1.59
1961548--1961640	20	4.6	20	84	1	96	51	10	6	31	1.62
1961629--1961691	32	1.9	33	83	3	83	52	6	7	33	1.56
1962629--1963187	43	13.1	43	83	4	643	37	18	14	28	1.90
1962629--1963187	85	6.6	85	82	6	616	37	18	14	28	1.90
1967816--1967850	16	2.2	16	89	0	52	40	11	14	34	1.82
1970709--1970894	92	2.0	92	92	0	309	39	11	5	43	1.65
1978139--1978200	26	2.3	26	78	13	63	48	9	3	38	1.52
1978211--1978258	20	2.3	22	82	10	64	54	6	2	37	1.38
1978255--1978293	20	2.0	20	94	0	69	53	17	7	20	1.68
1978581--1978669	20	4.3	21	78	7	103	53	12	5	28	1.60
1978570--1978669	21	4.9	20	75	13	96	54	12	5	29	1.58
1978570--1978669	41	2.4	41	89	0	146	54	12	5	29	1.58
1978577--1978681	41	2.6	41	87	3	131	56	13	4	25	1.57
1978706--1978801	44	2.3	43	89	5	142	56	9	3	31	1.47
1978845--1978949	20	5.3	20	77	7	99	52	9	6	31	1.60
1978943--1978988	16	2.9	16	76	0	56	54	6	8	30	1.56
1978926--1978988	32	1.9	33	87	3	92	52	6	7	33	1.56
1978959--1979004	20	2.4	18	82	10	65	54	8	6	30	1.56
1984960--1984990	15	2.1	15	93	0	53	61	6	22	9	1.50
1988561--1988598	14	2.6	15	88	12	53	78	2	2	15	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1992664--1992719	16	3.5	16	75	4	60	25	0	19	55	1.43
1992654--1992722	16	4.4	16	70	21	56	23	0	20	56	1.42
1992738--1992772	14	2.4	14	90	4	52	22	0	28	48	1.51
1992730--1992798	29	2.4	28	79	15	70	23	0	27	49	1.50
1992731--1992809	15	5.4	14	74	15	63	21	0	29	49	1.50
1992955--1993013	20	3.0	19	78	14	66	23	1	1	72	1.02
1993099--1993162	32	2.0	33	81	9	78	21	4	1	71	1.12
1994555--1994580	4	6.5	4	100	0	52	50	0	0	50	1.00
1995333--1995387	22	2.5	22	82	11	76	29	12	23	34	1.92
1995625--1995679	22	2.5	22	82	5	67	34	14	20	30	1.92
1996356--1996543	86	2.2	86	82	2	218	30	13	19	36	1.90
2000439--2000586	72	2.1	72	82	7	176	25	21	17	35	1.95
2001795--2001835	21	1.9	22	85	5	57	31	17	9	41	1.82
2007038--2007082	22	2.0	22	95	0	81	33	13	6	46	1.69
2007476--2007661	72	2.6	71	83	9	209	25	18	19	35	1.95
2013731--2013813	15	5.2	16	79	13	91	20	0	22	56	1.42
2013731--2013911	48	3.8	47	75	10	170	20	0	26	52	1.51
2013730--2013919	96	2.0	96	87	4	276	20	0	26	52	1.50
2013832--2013958	24	5.5	23	71	11	91	17	0	30	51	1.51
2013935--2013965	15	2.1	15	93	0	53	16	0	29	54	1.42
2013949--2014023	29	2.6	29	83	10	98	24	2	25	48	1.64
2013942--2014035	29	3.2	28	79	13	93	22	3	27	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2014157--2014222	17	3.7	19	80	13	70	22	3	3	71	1.14
2014325--2014355	12	2.7	11	90	9	53	16	9	6	67	1.39
2014548--2014581	10	3.5	10	88	8	52	23	0	5	70	1.09
2014548--2014584	19	1.9	19	94	0	65	24	0	5	70	1.08
2017193--2017225	10	3.0	11	86	13	50	54	6	3	36	1.41
2019348--2019587	130	1.8	131	82	4	306	35	13	14	36	1.85
2021481--2021658	72	2.5	71	82	9	193	26	17	19	35	1.94
2027709--2027789	14	5.2	16	75	18	73	20	0	23	55	1.43
2027727--2027794	17	4.4	15	77	18	61	20	0	23	55	1.43
2027714--2027893	94	1.9	93	84	9	242	20	0	27	52	1.51
2027920--2027994	29	2.6	29	83	10	98	24	2	25	48	1.64
2028127--2028191	17	3.8	18	78	15	66	23	3	3	70	1.15
2028302--2028332	12	2.7	11	90	9	53	16	9	6	67	1.39
2028525--2028558	10	3.5	10	88	8	52	23	0	5	70	1.09
2028525--2028561	19	1.9	19	94	0	65	24	0	5	70	1.08
2031161--2031193	10	3.0	11	86	13	50	54	6	3	36	1.41
2033320--2033564	131	1.9	131	82	5	307	33	13	15	37	1.86
2036374--2036399	13	2.0	13	100	0	52	69	0	0	30	0.89
2036408--2036463	21	2.7	21	91	2	87	58	0	1	39	1.08
2036528--2036565	20	1.9	19	89	5	58	55	5	2	36	1.37
2036775--2036830	25	2.3	24	82	11	69	48	1	7	42	1.41
2041395--2041429	2	17.5	2	93	0	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2043634--2043665	4	8.0	4	100	0	64	25	0	25	50	1.50
2044421--2044455	14	2.4	14	95	4	61	51	11	22	14	1.74
2044776--2044809	13	2.6	13	95	0	59	67	2	0	29	1.05
2044947--2044989	20	2.2	20	82	0	50	25	51	4	18	1.66
2047725--2047764	19	2.0	21	85	9	57	80	5	5	10	1.02
2049189--2049306	32	3.7	31	79	9	105	47	31	3	17	1.64
2049188--2049297	17	6.9	16	75	11	100	49	30	1	18	1.58
2049366--2049414	15	3.2	15	80	13	55	53	34	0	12	1.39
2049366--2049427	14	4.2	15	82	8	65	53	33	0	12	1.39
2060529--2060576	19	2.7	17	87	6	69	79	2	0	18	0.84
2060529--2060576	9	5.4	9	85	9	64	79	2	0	18	0.84
2060617--2060653	19	1.9	19	89	10	58	43	10	24	21	1.84
2061638--2061732	37	2.7	35	77	6	100	17	18	13	49	1.79
2061674--2061761	36	2.4	36	84	5	106	17	22	13	46	1.83
2061804--2062536	171	4.3	171	87	3	947	22	18	12	47	1.81
2062507--2062580	34	2.2	34	87	0	103	21	16	8	54	1.68
2062690--2062853	87	1.9	87	83	2	213	20	18	18	43	1.88
2062824--2062921	22	4.3	23	83	7	119	23	16	22	37	1.93
2062744--2063037	155	1.9	155	87	1	428	23	18	18	39	1.93
2063165--2063232	35	2.0	34	82	8	84	20	22	10	47	1.80
2063442--2063471	15	2.0	15	100	0	60	40	0	0	60	0.97
2063447--2063491	20	2.4	18	85	7	54	44	2	4	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2063489--2063539	14	3.1	15	77	22	50	68	1	0	29	1.00
2075145--2075194	3	17.0	3	82	12	59	32	0	2	66	1.03
2082429--2082505	40	1.9	40	81	0	91	25	9	18	46	1.78
2082634--2082809	39	4.5	40	76	11	152	23	12	20	43	1.86
2082957--2083124	39	4.3	39	82	6	196	25	10	21	42	1.84
2082957--2083124	78	2.1	79	89	3	250	25	10	21	42	1.84
2082957--2083135	79	2.3	80	85	7	251	25	11	21	42	1.85
2082957--2083157	79	2.6	79	82	9	250	25	11	20	42	1.86
2083308--2083355	3	16.3	3	81	12	55	29	0	2	68	1.01
2084185--2084233	3	17.0	3	87	8	75	30	0	2	67	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84