genome.fa.s157.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  24  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5253045--5253085	9	4.7	9	81	6	57	14	0	7	78	0.96
5253042--5253076	17	2.1	17	100	0	70	11	0	5	82	0.82
5253031--5253103	26	2.7	26	76	21	71	15	1	8	75	1.10
5253046--5253084	17	2.3	17	86	0	51	15	0	7	76	0.99
5253031--5253062	12	2.7	12	100	0	64	12	0	6	81	0.87
5253126--5253712	156	3.8	156	94	3	1019	29	14	18	37	1.91
5255407--5255789	58	6.7	57	82	6	447	36	11	6	45	1.65
5255547--5255580	15	2.3	15	85	5	52	44	0	2	52	1.16
5255407--5255788	114	3.3	112	85	7	511	36	11	6	45	1.66
5255692--5255782	27	3.2	27	65	22	69	39	14	5	40	1.69
5255807--5255963	5	31.0	5	69	22	80	74	2	3	19	1.09
5255807--5255963	17	9.3	16	69	14	84	74	2	3	19	1.09
5255806--5255905	28	3.5	29	77	20	88	77	1	7	15	1.04
5255812--5255895	32	2.6	32	83	9	100	77	1	7	14	1.04
5255808--5255944	8	15.3	9	69	19	58	73	2	4	18	1.13
5256806--5256865	21	2.9	21	83	14	63	66	5	5	23	1.31
5256828--5256867	11	3.5	12	75	25	50	62	5	5	27	1.37
5256806--5256867	22	2.9	21	86	11	74	66	4	4	24	1.31
5256951--5257097	15	10.6	14	67	24	64	74	3	2	19	1.09
5256981--5257097	10	11.4	10	72	17	71	76	2	2	18	1.02
5257014--5257096	21	4.0	21	72	23	68	77	2	1	19	0.95
5256993--5257089	13	7.5	12	73	23	58	76	3	1	19	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5256977--5257096	6	19.8	6	73	16	79	76	2	2	18	1.01
5283595--5283762	82	2.0	82	100	0	336	26	11	15	46	1.80
5290625--5290656	13	2.4	14	89	10	57	37	21	28	12	1.90
5294817--5294860	22	2.0	22	95	0	79	43	13	11	31	1.80
5298501--5298559	25	2.4	25	86	5	77	40	18	27	13	1.88
5298707--5298750	22	2.0	22	95	0	79	43	13	11	31	1.80
5317958--5317983	2	13.0	2	100	0	52	50	0	0	50	1.00
5319224--5319287	33	1.9	33	90	6	103	54	1	7	35	1.39
5320901--5320934	16	2.1	16	89	10	52	41	0	14	44	1.45
5322937--5322982	17	2.8	17	75	15	51	47	2	0	50	1.13
5325308--5325349	2	21.0	2	100	0	84	50	0	50	0	1.00
5332842--5332880	18	2.2	18	86	9	53	69	5	7	17	1.32
5335978--5336038	32	1.9	32	83	6	79	36	8	21	34	1.83
5339974--5340014	3	14.0	3	94	5	75	34	31	0	34	1.58
5344528--5344636	42	2.9	35	73	21	96	51	0	0	47	1.07
5344537--5344618	42	1.9	44	87	9	125	56	0	0	43	0.99
5344587--5344657	29	2.4	30	79	6	83	49	0	4	46	1.21
5344914--5344957	24	1.9	23	81	9	54	50	4	2	43	1.35
5344854--5344944	41	2.1	41	80	9	103	51	4	2	41	1.34
5345368--5345413	18	2.6	19	80	16	55	41	2	4	52	1.33
5355937--5355997	28	2.3	27	80	8	70	47	0	1	50	1.10
5355951--5356015	28	2.3	29	89	10	107	40	1	1	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5359051--5359086	3	12.3	3	94	5	65	69	0	0	30	0.89
5359169--5359240	29	2.4	29	81	2	81	41	4	4	50	1.41
5359935--5359978	22	2.0	21	83	12	54	56	0	2	40	1.11
5362329--5362387	29	2.1	29	87	3	84	52	11	10	25	1.69
5362671--5362845	87	2.0	87	92	0	287	46	8	9	35	1.66
5367808--5367946	70	2.0	70	97	0	260	36	16	10	36	1.82
5373171--5373207	19	2.1	17	90	10	56	45	13	0	40	1.43
5374710--5374881	20	8.1	21	74	13	81	33	4	0	62	1.19
5374710--5374867	24	6.4	24	71	16	81	33	3	0	62	1.18
5374823--5374873	22	2.4	22	93	3	86	35	5	0	58	1.22
5374780--5374883	24	4.2	24	78	11	111	32	7	0	59	1.26
5375749--5375873	6	22.3	6	77	13	67	26	0	4	68	1.12
5375737--5375804	21	3.2	21	78	12	77	26	1	4	67	1.18
5375826--5375875	5	9.8	5	95	4	91	18	0	0	82	0.68
5375825--5375876	16	3.3	16	94	5	97	17	0	0	82	0.66
5375824--5375886	10	6.6	9	87	10	65	15	0	1	82	0.74
5375822--5375887	16	4.1	15	71	24	55	18	0	1	80	0.79
5375909--5376021	58	2.0	57	92	1	190	42	6	12	38	1.68
5377703--5377807	9	11.0	9	76	18	88	80	0	12	7	0.91
5377714--5377820	19	5.9	18	78	17	57	77	0	13	9	0.99
5377702--5377795	28	3.3	27	86	10	118	78	0	11	9	0.96
5377703--5377813	29	3.8	28	84	11	127	78	0	13	8	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5377736--5377821	23	4.0	24	79	11	66	77	0	13	8	0.97
5378842--5378939	43	2.3	43	82	7	110	25	14	20	39	1.90
5378951--5379285	41	8.0	41	80	9	345	25	15	20	39	1.91
5378841--5379285	127	3.5	128	82	7	476	24	14	20	39	1.91
5378951--5379244	86	3.5	86	86	5	368	24	15	20	39	1.92
5378915--5379310	214	1.9	213	89	2	616	25	14	19	40	1.90
5379513--5379574	6	9.5	6	79	13	52	22	0	4	72	1.03
5379515--5379550	18	2.0	18	94	0	63	16	0	8	75	1.04
5379547--5379623	19	3.9	19	68	18	50	33	2	0	63	1.08
5379554--5379722	52	3.2	52	79	10	143	33	4	0	62	1.14
5379612--5379699	8	11.5	8	70	18	53	31	6	0	61	1.22
5379605--5379700	24	3.8	24	73	20	88	32	6	0	61	1.21
5379627--5379724	28	3.6	30	69	23	90	32	5	0	62	1.17
5379639--5379711	22	3.2	22	82	7	58	35	5	0	58	1.21
5380516--5380589	3	24.7	3	81	10	89	27	1	1	70	1.04
5387125--5387269	77	1.9	77	92	0	245	35	11	11	40	1.78
5393424--5393453	13	2.3	13	94	0	51	26	13	0	60	1.34
5400826--5400930	52	2.0	52	81	7	124	25	25	8	40	1.84
5400955--5400994	11	3.6	11	86	0	62	52	32	0	15	1.43
5400942--5400997	22	2.6	22	91	2	87	48	30	1	19	1.59
5402083--5402107	12	2.1	12	100	0	50	36	32	16	16	1.90
5406307--5406473	58	2.9	58	90	3	266	37	11	5	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5406492--5406537	12	3.6	13	76	23	53	82	0	0	17	0.67
5406492--5406551	25	2.4	25	91	5	95	80	0	1	18	0.80
5406492--5406544	13	4.2	13	90	9	83	83	0	0	16	0.66
5406504--5406550	19	2.5	19	93	6	78	82	0	2	14	0.75
5406504--5406551	6	7.8	6	93	4	78	81	0	2	16	0.79
5408330--5408378	6	7.7	6	78	13	53	77	0	0	22	0.77
5408319--5408373	27	2.0	27	89	0	83	74	0	1	23	0.91
5408309--5408378	33	2.1	33	87	10	99	74	0	1	24	0.90
5410974--5410998	2	12.5	2	100	0	50	48	0	0	52	1.00
5415579--5415620	21	2.0	21	85	0	57	30	0	2	66	1.04
5415977--5416044	29	2.3	29	84	0	91	27	10	5	55	1.56
5415982--5416030	16	3.2	16	72	16	50	26	10	8	55	1.61
5432005--5432090	32	2.8	32	83	3	104	27	3	3	65	1.25
5437213--5437237	12	2.1	12	100	0	50	32	0	0	68	0.90
5439501--5439529	2	14.5	2	100	0	58	51	0	48	0	1.00
5441662--5441728	29	2.3	28	80	12	73	40	25	8	25	1.84
5441776--5441819	23	1.9	23	85	0	61	54	18	2	25	1.55
5442734--5442768	13	2.6	14	90	4	54	28	0	0	71	0.86
5446594--5446634	22	1.9	22	90	5	66	41	4	4	48	1.46
5453025--5453055	2	15.5	2	100	0	62	0	48	0	51	1.00
5454344--5454368	13	1.9	13	100	0	50	36	8	0	56	1.29
5456303--5456327	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5457839--5457890	23	2.3	23	80	6	61	44	1	0	53	1.11
5460320--5460352	2	16.5	2	93	0	57	48	0	0	51	1.00
5465426--5465474	8	6.2	8	85	2	64	63	0	0	36	0.95
5465428--5465498	24	3.0	24	84	10	76	60	0	0	39	0.97
5485161--5485185	3	8.3	3	100	0	50	32	0	0	68	0.90
5486531--5486563	2	16.5	2	100	0	66	51	0	0	48	1.00
5487687--5487711	13	1.9	13	100	0	50	72	4	0	24	1.02
5487014--5489011	799	2.5	792	86	5	2712	44	7	5	42	1.56
5488798--5489212	209	1.9	215	85	7	583	45	6	2	44	1.45
5489101--5489146	23	2.0	24	86	4	67	54	4	2	39	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84