genome.fa.s157.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  42  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9878062--9878107	18	2.6	17	83	10	56	73	2	0	23	0.94
9881591--9881625	2	18.0	2	88	5	54	51	2	0	45	1.16
9882124--9882173	23	2.2	23	88	0	73	34	4	18	44	1.68
9884206--9884253	19	2.3	22	82	10	66	33	4	8	54	1.50
9891248--9891272	10	2.5	10	100	0	50	32	0	8	60	1.26
9892203--9892241	17	2.2	17	86	4	51	64	0	0	35	0.94
9892180--9892235	28	2.0	29	82	3	69	57	0	0	42	0.99
9896522--9896554	7	4.6	7	96	3	57	18	0	0	81	0.68
9902026--9902095	30	2.3	30	82	4	88	34	12	4	48	1.61
9905174--9905268	6	16.3	6	69	19	51	25	4	1	69	1.13
9905220--9905275	13	4.4	14	74	19	59	25	1	0	73	0.93
9905171--9905275	36	2.8	36	84	10	122	24	3	0	70	1.10
9906162--9906249	30	3.0	29	83	6	88	36	6	2	54	1.40
9906182--9906266	30	2.8	30	77	16	86	36	3	2	57	1.29
9906193--9906266	30	2.4	30	82	8	96	39	4	2	54	1.34
9906754--9906819	28	2.4	27	82	9	80	53	1	0	45	1.09
9906895--9906961	35	1.9	35	96	0	125	43	10	17	28	1.82
9907455--9907497	20	2.2	19	84	12	52	27	0	2	69	1.00
9907491--9907549	28	2.1	27	84	6	73	25	8	0	66	1.20
9907458--9907551	6	17.6	5	70	20	50	25	5	1	68	1.18
9907573--9907602	13	2.3	13	94	0	51	16	3	0	80	0.85
9908541--9908579	18	2.1	19	90	4	62	76	2	5	15	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9908937--9908966	11	2.6	11	94	5	51	73	6	0	20	1.05
9909628--9909938	119	2.6	119	79	2	320	44	16	21	18	1.87
9910316--9910486	84	2.0	84	98	0	333	37	14	9	38	1.79
9910829--9910866	9	4.4	9	90	3	53	5	0	2	92	0.47
9910829--9910858	12	2.5	12	94	0	51	3	0	3	93	0.42
9911437--9911501	32	2.0	32	100	0	130	38	15	12	33	1.85
9912635--9912690	28	2.0	27	96	0	85	30	21	8	39	1.84
9921096--9921128	9	3.6	9	92	8	57	12	0	0	87	0.53
9921160--9921203	18	2.4	19	88	7	65	81	0	2	15	0.78
9921575--9921611	10	3.7	10	88	0	56	75	18	0	5	0.99
9922004--9922042	12	3.2	12	92	3	60	82	2	2	12	0.89
9922020--9922106	3	30.3	3	81	6	92	66	3	3	26	1.23
9922105--9922154	3	16.7	3	100	0	100	34	0	0	66	0.92
9923116--9923166	25	2.0	25	96	0	93	37	9	9	43	1.71
9924490--9924612	62	2.0	64	87	6	180	54	6	7	31	1.54
9924490--9924634	62	2.3	64	82	7	179	54	6	6	31	1.53
9927410--9927443	13	2.6	13	90	0	50	23	5	0	70	1.09
9929071--9929100	15	2.0	15	93	0	51	26	23	20	30	1.98
9930130--9930185	20	2.7	21	81	18	64	25	1	3	69	1.14
9930134--9930184	10	5.1	10	76	23	54	25	1	1	70	1.08
9930134--9930184	16	3.3	15	83	10	68	25	1	1	70	1.08
9930677--9930730	14	3.9	14	77	15	58	42	0	3	53	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9949637--9949666	12	2.5	12	94	0	51	26	40	0	33	1.57
9951776--9951818	21	2.0	21	95	0	77	32	16	18	32	1.93
9956645--9956682	15	2.5	15	87	12	60	13	13	0	73	1.09
9968983--9969027	12	3.6	12	82	11	63	37	0	4	57	1.19
9968973--9969053	23	3.4	23	83	9	99	40	0	2	56	1.12
9968961--9969069	49	2.3	47	80	10	121	39	0	3	56	1.17
9968953--9969070	26	4.8	25	72	19	81	39	0	3	56	1.16
9976330--9976384	26	2.2	24	81	15	67	43	0	1	54	1.10
9976422--9976462	20	2.1	19	86	4	55	31	7	0	60	1.24
9976490--9976528	12	3.0	12	82	17	51	41	2	0	56	1.13
9976489--9976539	27	1.9	27	84	4	68	41	3	0	54	1.19
9980832--9980890	18	3.2	18	73	23	52	57	3	1	37	1.25
9981584--9981618	1	35.0	1	100	0	70	0	0	0	100	0.00
9987551--9988548	370	2.7	370	95	0	1818	23	25	33	16	1.96
9994965--9995017	22	2.5	22	77	20	58	60	3	1	33	1.26
9995022--9995051	10	2.8	11	90	10	53	56	0	0	43	0.99
9995072--9995141	28	2.6	28	84	10	85	52	1	1	44	1.18
10001297--10001659	54	6.7	53	75	14	244	33	19	19	27	1.96
10001347--10001602	108	2.4	108	81	6	270	33	18	19	27	1.96
10001350--10001651	162	1.9	162	81	6	371	32	18	19	28	1.96
10004416--10004484	34	2.0	34	100	0	138	55	11	14	18	1.69
10012779--10012829	25	2.0	25	82	17	61	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10012795--10012861	30	2.2	31	81	2	82	29	4	1	64	1.22
10018968--10019165	95	2.1	96	95	1	355	28	18	13	39	1.88
10037860--10037890	2	15.5	2	93	0	53	48	0	0	51	1.00
10041778--10041851	26	2.7	27	87	8	98	48	0	0	51	1.00
10041790--10041899	26	4.2	27	72	17	88	50	0	0	50	1.00
10041808--10041851	14	3.1	14	76	0	52	52	0	0	47	1.00
10041825--10041902	24	3.1	24	73	10	84	48	0	0	51	1.00
10041862--10041928	20	3.4	20	78	12	59	58	0	0	41	0.98
10042683--10042725	22	1.9	23	85	4	61	37	0	0	62	0.95
10042764--10042803	21	1.9	21	85	10	55	37	2	0	60	1.11
10045073--10045097	13	1.9	13	100	0	50	72	0	0	28	0.86
10045242--10045300	17	3.5	16	77	13	57	40	0	1	57	1.09
10047306--10047339	18	2.0	16	88	11	50	41	0	17	41	1.50
10062327--10062616	145	2.0	145	100	0	580	28	21	20	29	1.98
10062669--10062844	91	1.9	91	91	2	291	35	23	13	27	1.92
10064986--10065015	10	3.1	10	95	4	53	36	0	0	63	0.95
10064988--10065017	9	3.2	9	95	4	51	36	0	0	63	0.95
10066996--10067085	46	2.0	45	82	6	110	42	6	3	47	1.46
10069000--10069042	21	2.0	22	86	8	63	20	4	4	69	1.25
10070976--10071010	14	2.5	14	90	0	52	37	0	8	54	1.31
10077725--10077796	33	2.2	32	85	7	99	47	1	8	43	1.42
10077815--10077871	24	2.3	25	78	3	62	56	0	5	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10081981--10082049	6	11.2	6	79	14	70	17	2	1	78	0.95
10081980--10082056	25	3.1	25	74	18	79	19	2	1	76	0.97
10082165--10082242	22	3.6	21	78	16	70	24	5	7	62	1.42
10083088--10083220	11	12.5	11	69	21	63	17	2	3	76	1.03
10083088--10083134	4	11.8	4	82	8	51	17	0	4	78	0.90
10083157--10083215	5	10.5	6	72	20	56	11	3	1	83	0.85
10083113--10083215	17	6.1	17	72	11	79	16	2	2	77	1.01
10083165--10083230	11	6.1	10	81	15	69	13	3	1	81	0.87
10083293--10083610	117	2.7	117	83	6	381	43	8	13	35	1.73
10083285--10083600	60	5.4	58	81	7	341	43	7	13	35	1.71
10087509--10087547	20	2.0	19	90	5	60	79	0	12	7	0.93
10087509--10087606	17	5.8	17	72	11	76	78	0	13	8	0.96
10087540--10087608	37	1.9	36	83	13	90	79	0	13	7	0.92
10088849--10089392	41	13.1	41	89	2	750	23	16	22	36	1.94
10088849--10089392	83	6.6	82	89	2	741	23	16	22	36	1.94
10088849--10089392	124	4.4	124	90	2	790	23	16	22	36	1.94
10089400--10089443	10	4.3	10	82	5	52	86	4	4	4	0.79
10089400--10089443	21	2.2	20	87	4	61	86	4	4	4	0.79
10089593--10089698	26	4.3	23	75	18	81	16	4	1	76	1.05
10089616--10089687	32	2.3	31	83	9	92	18	1	2	77	0.96
10089616--10089738	6	19.7	6	74	20	85	20	1	2	75	1.00
10089627--10089741	42	2.8	41	80	10	110	20	1	2	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10089789--10089898	22	5.1	21	75	21	68	20	5	9	64	1.42
10090711--10090757	24	1.9	25	91	4	78	17	0	2	80	0.80
10090719--10090757	4	9.8	4	85	0	51	17	0	2	79	0.84
10090797--10090845	10	5.0	10	78	14	57	12	2	2	83	0.82
10090796--10090845	18	2.9	17	82	11	66	14	2	2	82	0.86
10090766--10090854	22	4.0	23	75	16	62	17	5	1	75	1.06
10090780--10090845	28	2.4	28	82	7	80	15	3	1	80	0.91
10090797--10090857	29	2.1	30	84	9	81	13	4	1	80	0.95
10090820--10090863	16	2.9	15	83	12	54	15	6	2	75	1.12
10090901--10091224	59	5.5	59	78	7	331	43	7	12	36	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84