genome.fa.s157.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  22  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4489465--4489569	37	2.9	36	87	4	147	51	0	2	44	1.22
4489641--4489665	11	2.3	11	100	0	50	48	0	0	52	1.00
4501050--4501097	18	2.5	19	76	6	53	27	0	6	66	1.15
4502355--4502420	34	1.9	34	87	0	96	22	16	1	59	1.46
4503705--4503821	22	5.3	21	77	12	83	53	4	5	36	1.43
4503838--4503886	22	2.2	22	78	7	55	61	8	6	24	1.47
4503933--4504052	44	2.7	44	85	2	161	53	2	9	35	1.46
4503933--4504050	22	5.4	22	76	6	114	52	2	9	35	1.47
4504481--4504570	24	3.7	24	67	20	62	46	1	11	41	1.46
4504482--4504569	22	3.8	22	73	8	68	45	1	11	42	1.47
4504607--4504655	22	2.2	22	77	0	53	48	6	10	34	1.62
4504683--4505118	22	19.5	22	69	9	114	46	7	10	36	1.65
4504895--4505044	11	14.0	11	66	9	51	47	6	8	38	1.58
4505383--4505759	22	17.4	22	70	11	136	46	8	8	36	1.65
4505610--4505755	11	13.3	11	72	8	73	49	6	5	38	1.53
4505556--4505757	88	2.3	89	80	10	227	46	8	6	38	1.61
4505588--4505761	66	2.6	67	82	5	185	47	8	5	37	1.58
4506008--4506050	22	2.0	22	85	0	59	44	0	6	48	1.29
4507589--4507628	11	3.5	11	82	3	53	80	0	2	17	0.83
4508025--4508080	12	4.6	12	77	4	67	51	0	0	48	1.00
4508446--4508503	30	1.9	31	85	3	82	32	10	0	56	1.33
4511595--4511624	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4515027--4515092	32	2.1	32	100	0	132	25	13	21	39	1.90
4517749--4517818	29	2.4	30	77	15	76	54	1	4	40	1.29
4532832--4532998	84	2.0	84	90	4	266	14	26	35	22	1.93
4535879--4535966	43	2.0	43	95	0	158	19	19	31	29	1.96
4536236--4536402	84	2.0	84	90	4	266	14	26	36	22	1.93
4544671--4544709	2	19.5	2	100	0	78	51	0	0	48	1.00
4547624--4547692	30	2.3	30	77	5	77	46	7	0	46	1.30
4550958--4550991	10	3.4	10	87	0	50	11	88	0	0	0.52
4554291--4554334	19	2.4	19	92	3	72	45	0	0	54	0.99
4554296--4554349	26	2.1	26	83	13	67	50	0	0	50	1.00
4554872--4554909	16	2.4	16	86	4	51	44	0	0	55	0.99
4568942--4569002	32	1.9	32	93	0	104	49	14	8	27	1.72
4579825--4579910	30	2.9	30	87	0	109	34	30	10	24	1.89
4580186--4580226	18	2.3	18	86	0	55	26	36	7	29	1.83
4580534--4580568	2	17.5	2	100	0	70	51	0	0	48	1.00
4587266--4587303	2	19.0	2	100	0	76	50	0	0	50	1.00
4587881--4587957	29	2.7	29	81	2	84	40	3	1	54	1.27
4587911--4587994	30	2.9	29	82	8	82	41	3	2	52	1.31
4597871--4597931	23	2.8	22	83	11	81	50	0	0	49	1.00
4598927--4598959	17	1.9	18	88	11	52	45	0	12	42	1.41
4600631--4600665	18	1.9	18	88	0	52	34	0	0	65	0.93
4606929--4606954	2	13.0	2	100	0	52	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4611524--4611550	1	27.0	1	100	0	54	0	100	0	0	0.00
4612208--4612246	18	2.2	18	90	9	62	0	41	0	58	0.98
4622922--4623338	214	2.0	213	89	2	649	32	19	15	33	1.93
4623204--4623462	127	2.0	127	99	0	509	34	22	14	28	1.93
4623589--4623636	22	2.2	22	100	0	96	54	8	10	27	1.63
4626899--4626966	30	2.3	30	87	2	93	44	0	0	55	0.99
4626939--4626990	22	2.5	22	93	6	90	50	0	0	50	1.00
4627755--4627792	8	4.8	8	96	0	67	42	0	0	57	0.98
4628626--4628716	47	1.9	47	93	0	155	37	19	9	32	1.85
4631546--4631581	2	18.0	2	100	0	72	50	0	0	50	1.00
4631688--4631720	2	17.0	2	93	6	59	48	0	0	51	1.00
4633569--4633597	2	14.5	2	100	0	58	51	0	0	48	1.00
4635697--4635749	22	2.5	22	93	3	90	49	0	0	50	1.00
4639171--4639203	2	16.5	2	100	0	66	51	0	0	48	1.00
4640722--4640755	2	17.0	2	93	0	59	47	0	0	52	1.00
4641224--4641256	3	10.7	3	93	6	57	0	30	3	66	1.06
4642921--4642945	2	12.5	2	100	0	50	48	0	0	52	1.00
4645811--4645876	29	2.2	29	78	7	80	51	3	7	37	1.46
4648827--4648860	13	2.6	13	90	0	59	55	8	0	35	1.31
4649545--4649569	2	12.5	2	100	0	50	48	0	0	52	1.00
4657533--4657584	20	2.6	19	85	8	68	28	3	5	61	1.37
4661515--4661556	19	2.2	19	86	0	57	59	11	7	21	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4663270--4663294	2	12.5	2	100	0	50	52	0	0	48	1.00
4667634--4667664	2	16.0	2	93	6	55	48	0	0	51	1.00
4684647--4684691	22	2.1	22	87	4	65	37	4	4	53	1.41
4688233--4688292	31	1.9	31	86	6	86	40	8	1	50	1.43
4689721--4689791	32	2.4	27	86	11	88	45	1	1	52	1.18
4689750--4689812	27	2.6	23	81	18	67	49	1	0	49	1.10
4692383--4692424	21	2.0	22	85	4	59	57	9	2	30	1.44
4693822--4693922	49	2.1	49	80	8	120	52	2	0	44	1.16
4703862--4703957	29	3.1	29	83	7	111	48	2	3	45	1.29
4709605--4709661	22	2.6	21	78	13	62	54	0	0	45	0.99
4709710--4709756	22	2.2	21	84	3	58	48	12	0	38	1.41
4709753--4709783	7	4.4	7	95	0	53	51	0	0	48	1.00
4712833--4712895	3	21.0	3	100	0	126	66	0	0	33	0.92
4717629--4717702	29	2.5	31	85	10	93	27	8	1	63	1.30
4721599--4721643	19	2.3	20	85	11	67	44	0	4	51	1.21
4721559--4721642	19	4.3	19	74	14	64	45	2	2	50	1.27
4729922--4729960	6	6.7	6	91	8	55	12	0	0	87	0.55
4731029--4731074	23	2.0	23	82	0	56	56	0	0	43	0.99
4731091--4731129	21	1.9	21	89	5	62	48	2	2	46	1.29
4737761--4737794	17	1.9	18	88	5	52	32	5	0	61	1.20
4737986--4738048	20	3.0	22	76	19	64	50	0	0	49	1.00
4737996--4738056	20	2.9	22	74	18	67	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4744942--4744978	10	3.6	10	92	7	65	59	24	0	16	1.37
4744638--4745608	314	3.0	333	92	6	1746	33	19	14	32	1.92
4746682--4746728	23	2.1	23	84	11	62	36	2	2	59	1.21
4757148--4757239	44	2.0	46	91	4	152	17	18	14	50	1.79
4758879--4758912	18	1.9	18	88	5	52	61	2	0	35	1.11
4760133--4760163	3	10.3	3	100	0	62	32	0	0	67	0.91
4761237--4761282	21	2.2	21	96	3	85	47	2	0	50	1.13
4761234--4761285	21	2.7	19	86	13	79	46	1	0	51	1.12
4761256--4761322	26	2.6	27	83	11	86	52	1	0	46	1.09
4761280--4761334	25	2.2	25	83	6	67	60	1	0	38	1.08
4764533--4764591	21	2.8	21	80	10	75	44	5	1	49	1.34
4768264--4768345	41	2.0	41	100	0	164	34	17	19	29	1.94
4774414--4774463	21	2.5	20	84	12	68	50	0	0	50	1.00
4774420--4774462	22	2.0	20	91	8	68	46	0	0	53	1.00
4774435--4774491	30	1.9	30	85	0	78	52	1	0	45	1.11
4776404--4776641	63	3.8	62	76	12	209	43	4	5	45	1.48
4779815--4779853	21	1.9	20	94	5	69	46	7	2	43	1.46
4781730--4781760	16	1.9	16	93	0	53	93	3	0	3	0.41
4788767--4788826	28	2.1	27	85	8	84	30	10	8	51	1.64
4788778--4788834	28	2.0	28	100	0	114	29	10	7	52	1.62
4788948--4788975	2	14.0	2	100	0	56	50	0	0	50	1.00
4795350--4795376	1	27.0	1	100	0	54	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4799545--4799584	6	6.7	6	91	0	53	0	37	12	50	1.41
4808911--4808971	14	4.2	14	76	15	70	62	8	22	6	1.47
4809606--4809833	125	1.8	125	79	2	269	47	10	11	30	1.73
4809606--4809873	62	4.3	62	79	4	214	48	10	12	28	1.73
4809787--4809990	58	3.4	61	70	17	167	46	9	11	33	1.72
4816129--4816173	21	2.1	21	88	8	65	51	2	0	46	1.13
4816142--4816184	16	2.8	15	86	6	59	48	2	2	46	1.27
4821100--4821202	37	2.8	37	93	0	179	33	13	14	38	1.85
4822869--4822912	6	7.3	6	85	10	63	36	0	47	15	1.46
4822869--4822912	18	2.4	18	96	0	79	36	0	47	15	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84