genome.fa.s157.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  19  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3632813--3632855	21	2.0	22	81	4	52	58	0	2	39	1.11
3634707--3634830	42	3.0	42	93	2	214	22	13	39	24	1.90
3649701--3649811	45	2.5	45	83	0	123	19	9	41	29	1.82
3649791--3649850	12	5.5	12	68	22	51	11	5	58	25	1.53
3649791--3649853	21	3.0	21	97	0	117	11	4	60	23	1.49
3649895--3649990	48	2.1	47	88	9	144	23	12	36	27	1.91
3666664--3666697	16	2.1	17	88	5	52	2	5	8	82	0.93
3668223--3668252	14	2.1	14	93	0	51	23	3	13	60	1.48
3675140--3675190	2	25.5	2	100	0	102	0	49	0	50	1.00
3675640--3675664	3	8.3	3	100	0	50	32	0	0	68	0.90
3676434--3676537	38	2.8	37	71	10	95	54	1	0	42	1.17
3677006--3677088	26	3.1	27	78	18	84	33	0	2	63	1.07
3677008--3677088	29	2.9	29	80	14	89	34	0	2	62	1.08
3677017--3677088	28	2.5	29	82	13	87	36	0	2	61	1.11
3680079--3680153	16	4.4	16	68	22	55	44	0	1	54	1.08
3693546--3693583	19	2.0	19	85	10	51	47	0	0	52	1.00
3695026--3695072	15	3.1	15	84	3	58	46	2	4	46	1.34
3695341--3695387	22	2.1	23	84	4	60	51	0	2	46	1.13
3696007--3696034	12	2.3	12	100	0	56	0	7	0	92	0.37
3697065--3697102	16	2.3	17	86	4	51	55	2	5	36	1.37
3705390--3705529	52	2.7	51	76	9	138	45	5	20	30	1.72
3721334--3721384	16	3.0	17	75	13	52	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3722706--3722795	30	2.9	31	74	8	87	52	1	1	45	1.15
3722960--3723006	24	1.9	25	91	4	78	57	4	0	38	1.18
3722968--3723054	33	2.8	32	78	13	90	55	4	0	40	1.21
3722768--3723168	221	1.8	218	84	7	544	42	12	3	40	1.61
3735675--3735726	16	3.2	16	72	20	54	48	0	0	51	1.00
3740301--3740421	62	2.0	61	86	4	172	47	3	1	47	1.28
3740298--3740412	29	3.8	29	73	10	106	46	3	1	47	1.29
3744947--3745068	30	4.2	29	82	5	147	56	0	3	40	1.16
3745712--3745876	81	2.0	81	82	2	197	43	7	14	34	1.75
3751803--3751827	2	12.5	2	100	0	50	52	0	0	48	1.00
3755789--3755822	15	2.3	15	89	0	50	26	23	29	20	1.99
3765552--3765589	3	12.7	3	100	0	76	34	0	0	65	0.93
3786291--3786336	23	2.0	23	87	8	67	32	2	0	65	1.05
3795689--3795721	16	1.9	18	88	11	52	72	3	3	21	1.11
3798060--3798098	12	3.2	13	82	10	55	56	5	0	38	1.22
3798058--3798096	14	2.8	14	92	0	60	56	5	0	38	1.22
3798057--3798096	16	2.5	16	88	8	55	55	5	0	40	1.22
3803345--3803402	22	2.7	22	81	5	66	44	0	1	53	1.10
3820314--3820353	13	3.3	13	86	13	59	20	7	0	72	1.08
3820717--3820868	55	2.5	63	84	8	167	32	33	3	30	1.76
3820758--3820868	55	2.0	55	91	0	177	32	32	4	30	1.78
3822111--3822354	60	4.1	59	83	8	307	47	5	9	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3822118--3822355	58	4.0	59	83	8	313	49	5	9	36	1.58
3822118--3822350	121	2.0	117	88	3	349	50	4	9	35	1.56
3826183--3826239	11	5.5	11	77	10	50	75	0	17	7	1.02
3826184--3826263	31	2.6	31	82	4	99	76	0	15	8	1.02
3826941--3827134	79	2.5	79	88	0	289	44	9	18	27	1.80
3827495--3827771	58	4.7	58	71	12	195	40	10	14	34	1.80
3827557--3827655	22	4.7	21	75	12	78	40	10	14	35	1.79
3827451--3827714	122	2.1	122	85	6	345	40	10	15	34	1.81
3827734--3827809	20	3.8	20	79	10	75	40	11	11	35	1.79
3827640--3827772	58	2.3	58	90	2	205	42	12	14	31	1.82
3827753--3827854	21	4.9	21	82	7	127	38	7	14	39	1.75
3827732--3827854	41	3.0	42	83	5	144	39	8	13	38	1.75
3827495--3828152	201	3.3	198	78	8	629	40	10	14	34	1.80
3827829--3828013	79	2.3	79	88	0	262	40	9	13	36	1.78
3827974--3828055	21	3.9	21	84	7	94	40	10	13	35	1.80
3827895--3828132	122	2.0	121	88	0	359	39	10	13	35	1.80
3827997--3828153	79	2.0	78	83	7	199	40	10	16	32	1.83
3828079--3828128	20	2.4	21	90	3	75	40	6	16	38	1.73
3828079--3828134	21	2.8	20	88	2	76	37	7	16	39	1.76
3828016--3828190	79	2.2	78	86	3	244	38	11	16	33	1.85
3828298--3828379	41	2.0	42	80	9	96	31	13	17	37	1.88
3828936--3828966	13	2.4	13	94	0	53	19	6	3	70	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3830714--3830755	16	2.6	16	88	7	59	52	7	0	40	1.29
3830663--3830820	72	2.2	74	84	7	200	49	5	9	36	1.57
3830758--3830912	60	2.6	59	83	7	197	46	5	11	36	1.64
3835065--3835115	19	2.5	21	78	18	63	49	9	0	41	1.36
3837808--3837850	15	2.8	15	89	3	68	48	0	0	51	1.00
3837808--3837854	23	2.0	23	84	15	62	48	0	0	51	1.00
3840370--3840434	31	2.1	31	88	5	96	40	4	3	52	1.38
3840589--3840623	18	1.9	18	88	0	52	74	0	2	22	0.95
3845397--3845440	19	2.2	20	84	15	56	27	0	9	63	1.24
3854553--3854591	19	2.1	19	85	4	53	48	17	0	33	1.48
3854961--3855013	27	2.0	27	81	7	63	49	9	7	33	1.64
3856495--3856561	25	2.6	25	72	6	64	11	13	4	70	1.31
3868441--3868489	18	2.6	19	84	9	57	44	2	4	48	1.33
3868457--3868515	29	2.0	29	87	6	84	42	0	5	52	1.23
3868439--3868509	18	4.4	16	73	21	51	43	1	5	49	1.35
3870241--3870297	29	1.9	30	89	3	89	26	8	14	50	1.71
3871947--3871994	25	1.9	25	83	8	62	41	0	2	56	1.11
3890611--3890642	2	16.0	2	100	0	64	50	0	0	50	1.00
3891182--3891208	2	13.5	2	100	0	54	51	0	0	48	1.00
3892653--3892685	2	16.5	2	100	0	66	48	0	0	51	1.00
3893019--3893043	2	12.5	2	100	0	50	48	0	0	52	1.00
3918616--3918655	14	3.1	14	75	20	50	37	5	0	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3920191--3920242	2	26.5	2	92	3	88	46	0	0	53	1.00
3926467--3926494	14	2.0	14	100	0	56	50	7	7	35	1.57
3927828--3927855	7	4.0	7	100	0	56	57	0	0	42	0.99
3929818--3929847	2	15.0	2	100	0	60	50	0	0	50	1.00
3930021--3930045	2	12.5	2	100	0	50	48	0	0	52	1.00
3935126--3935245	60	2.0	60	100	0	240	41	25	1	31	1.65
3935144--3935239	30	3.2	30	63	26	76	41	23	2	32	1.66
3938295--3938346	26	2.0	26	100	0	104	19	19	7	53	1.68
3944749--3944778	15	2.1	15	93	6	53	40	0	0	60	0.97
3944941--3945017	30	2.6	30	85	0	109	36	10	3	49	1.56
3945156--3945187	14	2.3	14	100	0	64	46	0	12	40	1.42
3945180--3945218	20	2.0	20	89	0	60	41	5	2	51	1.38
3952949--3953011	24	2.9	23	82	15	64	63	0	0	36	0.95
3952932--3952994	32	2.0	32	84	6	83	57	0	0	42	0.99
3952975--3953021	21	2.2	21	82	14	53	70	4	0	25	1.05
3953182--3953251	35	2.0	35	86	10	99	55	1	2	40	1.23
3953233--3953276	17	2.7	16	83	13	54	70	0	9	20	1.14
3954131--3954222	30	3.1	29	70	17	71	41	8	1	48	1.41
3954380--3954418	17	2.4	16	87	8	60	35	0	0	64	0.94
3956133--3956183	20	2.5	21	81	6	61	56	1	7	33	1.39
3959144--3959172	2	14.5	2	100	0	58	48	0	0	51	1.00
3967842--3967876	16	2.2	16	89	0	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3967837--3967937	30	3.4	28	73	16	80	47	0	0	51	1.07
3975548--3975604	2	28.5	2	100	0	114	0	50	0	49	1.00
3980062--3980100	3	13.0	3	100	0	78	66	0	0	33	0.92
3982324--3982356	14	2.4	14	90	5	50	42	0	0	57	0.98
3982332--3982361	14	2.1	14	93	0	51	43	0	0	56	0.99
3983122--3983160	20	1.9	21	84	5	53	46	2	0	51	1.14
3983799--3983851	20	2.5	22	76	14	58	39	1	1	56	1.21
3983800--3983846	21	2.2	22	81	11	53	42	0	2	55	1.12
3986176--3986201	2	13.0	2	100	0	52	50	0	0	50	1.00
3992417--3992460	2	23.0	2	90	9	74	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84