genome.fa.s157.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  54  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12389082--12389140	17	3.7	15	76	13	55	74	1	1	22	1.00
12389077--12389139	32	1.9	31	84	15	83	74	1	1	22	0.99
12390065--12390095	10	2.9	11	90	9	55	9	9	51	29	1.66
12390242--12390294	3	17.7	3	88	0	79	39	0	0	60	0.97
12390527--12390715	85	2.2	87	81	4	222	39	17	19	23	1.92
12390619--12390955	109	3.1	108	80	7	339	39	16	20	23	1.92
12390915--12390964	22	2.3	23	86	10	77	24	12	28	36	1.91
12390970--12391278	121	2.5	122	92	1	496	36	15	14	33	1.88
12391804--12392376	66	8.7	66	83	4	658	33	15	20	30	1.94
12391804--12392368	131	4.3	131	85	2	690	33	15	20	30	1.94
12391802--12392368	197	2.9	197	84	2	694	33	15	20	29	1.94
12391804--12392377	33	17.5	33	79	6	585	33	15	20	30	1.94
12392523--12392567	24	1.9	23	90	4	72	26	4	2	66	1.22
12395230--12395537	58	5.2	58	90	2	456	41	7	12	37	1.71
12395230--12395535	117	2.6	118	92	2	490	42	7	12	37	1.71
12400331--12400395	9	6.4	10	76	13	62	81	0	12	6	0.86
12400326--12400378	11	4.8	11	83	0	70	84	0	9	5	0.76
12400334--12400404	30	2.5	27	82	11	79	81	0	11	7	0.86
12400330--12400404	17	4.5	17	72	8	55	82	0	10	6	0.83
12401444--12401502	22	2.7	22	84	5	66	38	8	18	33	1.81
12401685--12401766	43	1.9	42	82	7	103	40	10	14	34	1.81
12402059--12402144	42	2.0	42	95	4	156	25	16	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12402090--12402199	55	2.0	55	94	3	195	27	14	20	37	1.92
12402149--12402419	42	6.5	41	86	3	355	25	14	21	39	1.91
12402059--12402414	97	4.0	92	80	15	358	25	15	21	37	1.92
12402156--12402414	83	3.1	83	87	5	321	25	15	21	37	1.92
12402149--12402419	125	2.2	124	86	4	368	25	14	21	39	1.91
12402161--12402576	42	10.0	42	75	9	149	24	14	20	40	1.90
12402517--12402816	98	3.0	101	88	7	423	43	14	12	29	1.83
12402971--12403012	13	3.7	11	82	14	50	23	7	2	66	1.28
12402981--12403010	13	2.3	13	94	0	51	23	6	3	66	1.30
12405690--12405729	17	2.4	16	87	4	53	42	2	0	55	1.13
12405660--12405873	59	3.6	60	82	9	235	44	4	10	40	1.59
12405660--12405874	58	3.7	57	84	7	254	44	4	10	40	1.59
12416813--12416939	51	2.4	53	76	10	145	19	0	33	47	1.50
12416884--12416978	44	2.2	44	82	3	111	20	0	32	47	1.50
12416957--12417023	17	4.2	16	76	10	57	19	1	26	52	1.55
12416978--12417024	15	3.0	15	81	6	58	23	2	23	51	1.59
12418109--12418144	14	2.5	15	91	8	58	0	2	25	72	0.98
12418568--12418608	3	13.7	3	84	0	55	41	0	0	58	0.98
12418563--12418608	9	5.1	9	86	0	56	43	0	0	56	0.99
12424678--12424725	22	2.1	23	96	3	89	68	0	14	16	1.21
12426554--12426639	38	2.2	38	97	2	163	27	19	13	38	1.90
12433231--12433274	22	2.0	22	90	0	70	36	9	9	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12440725--12440877	75	2.0	75	92	2	254	43	15	9	32	1.78
12447001--12447040	5	7.8	5	83	5	53	75	0	22	2	0.93
12447001--12447039	10	3.8	10	90	6	60	74	0	23	2	0.94
12447349--12447379	2	15.5	2	93	0	53	51	0	0	48	1.00
12449042--12449076	17	2.1	17	88	0	52	51	0	0	48	1.00
12449243--12449650	205	2.0	205	98	0	789	33	8	10	46	1.70
12451429--12451517	42	2.1	43	81	10	103	49	5	5	39	1.50
12451564--12451625	22	2.8	22	71	9	54	54	9	3	32	1.49
12451660--12451765	22	4.8	22	74	4	79	48	4	11	35	1.60
12451795--12451866	22	3.3	21	78	7	63	50	2	15	31	1.58
12451878--12451971	22	4.4	22	75	11	79	51	9	4	35	1.54
12452016--12452131	44	2.6	44	78	8	112	50	2	9	37	1.49
12452130--12452202	22	3.4	22	78	3	76	49	8	8	34	1.62
12452784--12452814	15	2.1	14	94	5	53	48	12	6	32	1.67
12452820--12452868	15	3.6	15	74	25	63	53	16	12	18	1.73
12454129--12454191	22	2.9	22	90	0	99	52	4	9	33	1.55
12455088--12455130	18	2.4	18	84	7	52	27	4	2	65	1.25
12456570--12456627	18	3.4	17	77	17	66	10	3	6	79	1.04
12456971--12457074	50	2.1	51	87	1	147	39	16	12	31	1.86
12456972--12457095	50	2.5	50	81	3	144	35	17	16	30	1.92
12457021--12457184	86	1.9	88	86	6	235	36	20	16	26	1.93
12457095--12457203	53	2.0	54	89	3	166	41	18	11	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12468591--12468636	18	2.6	18	82	6	58	26	2	2	69	1.11
12468427--12468813	215	1.8	214	79	8	455	34	11	8	46	1.70
12470088--12470122	14	2.7	13	87	12	54	8	0	11	80	0.92
12470088--12470118	7	4.6	7	96	4	55	9	0	12	77	0.99
12470373--12470417	22	2.0	22	87	8	65	46	6	6	40	1.56
12470498--12470549	21	2.4	21	84	9	61	53	3	13	28	1.57
12470498--12470578	20	3.9	21	75	16	62	55	4	9	29	1.54
12470559--12470648	22	4.1	21	76	13	74	51	2	6	40	1.41
12470558--12470644	44	2.0	44	84	4	113	52	2	6	37	1.41
12470574--12470659	44	2.0	44	81	4	102	50	2	9	38	1.48
12470679--12470852	22	7.9	21	75	8	114	48	6	5	39	1.53
12470658--12470852	44	4.4	44	73	8	155	46	6	6	41	1.54
12470567--12470747	96	1.9	96	80	8	217	46	3	8	40	1.52
12470683--12470852	66	2.6	65	79	5	164	48	6	5	40	1.52
12470764--12470922	22	7.2	21	74	9	79	45	8	8	37	1.65
12471304--12471358	21	2.6	21	82	5	76	49	10	7	32	1.65
12471304--12471357	10	5.2	10	73	8	54	50	11	7	31	1.66
12471340--12471375	16	2.2	17	90	5	56	58	11	2	27	1.46
12471332--12471385	27	2.0	27	85	7	74	55	9	3	31	1.49
12471307--12471388	11	8.3	10	72	22	66	50	9	4	35	1.57
12471522--12471550	2	14.5	2	100	0	58	48	0	0	51	1.00
12481842--12481873	12	2.6	13	85	14	50	78	0	6	15	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12487167--12487222	28	2.0	28	100	0	112	32	21	7	39	1.80
12487779--12487805	2	13.5	2	100	0	54	0	48	0	51	1.00
12487805--12487829	2	12.5	2	100	0	50	48	0	0	52	1.00
12490187--12490317	7	19.7	6	73	19	68	27	0	0	70	0.97
12490187--12490257	13	5.4	13	79	14	74	26	0	0	73	0.84
12490189--12490385	32	5.8	34	72	17	133	27	2	2	68	1.11
12490197--12490428	4	59.8	4	69	20	88	28	2	2	67	1.15
12490187--12490420	64	3.6	63	77	11	208	28	2	2	67	1.16
12490349--12490436	7	12.4	7	72	21	60	30	3	2	63	1.23
12490214--12490428	34	6.5	33	69	24	95	28	2	2	66	1.18
12490349--12490415	26	2.6	27	84	15	81	32	2	1	62	1.19
12490354--12490482	41	3.1	41	80	14	133	30	5	3	61	1.34
12490386--12490459	20	3.7	19	71	15	60	28	6	5	59	1.45
12490751--12490808	11	5.1	11	75	8	53	37	1	8	51	1.43
12491312--12491354	17	2.6	16	85	10	59	30	0	2	67	1.03
12491368--12491439	5	13.8	5	77	13	58	15	6	0	77	0.96
12491384--12491439	6	9.3	6	77	14	53	16	5	0	78	0.92
12491368--12491444	28	2.7	27	82	11	93	15	7	0	76	1.00
12491369--12491434	17	3.9	17	71	21	50	15	7	0	77	0.98
12491458--12491727	57	4.7	56	82	4	283	44	7	11	36	1.68
12491436--12491725	116	2.5	112	83	8	343	45	6	10	37	1.66
12502830--12503340	242	2.1	242	83	3	634	36	12	13	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12502830--12503415	242	2.4	241	80	5	599	36	13	13	37	1.84
12505823--12505848	2	13.0	2	100	0	52	0	50	0	50	1.00
12505848--12505875	2	14.0	2	100	0	56	50	0	0	50	1.00
12507221--12507256	2	18.0	2	94	0	63	47	0	0	52	1.00
12507256--12507284	2	14.5	2	100	0	58	51	0	48	0	1.00
12522303--12522713	128	3.2	127	76	7	346	35	13	12	38	1.83
12522303--12522716	64	6.4	63	70	11	196	35	13	12	38	1.83
12522314--12522589	64	4.3	60	75	10	203	34	13	11	39	1.81
12523074--12523227	62	2.4	64	80	4	159	37	11	14	37	1.82
12530296--12530330	14	2.5	14	95	0	61	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84