genome.fa.s157.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  72  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15530989--15531031	22	2.0	20	86	8	59	79	2	0	18	0.85
15531282--15531332	19	2.7	19	77	20	61	50	11	13	23	1.74
15533637--15533675	19	2.1	19	85	9	53	12	12	0	74	1.08
15536589--15536757	45	3.7	45	77	3	178	35	12	17	34	1.87
15536569--15536737	90	1.9	90	86	4	243	35	11	17	34	1.87
15538053--15538119	22	3.0	22	69	16	66	65	1	10	22	1.31
15538133--15538174	22	2.0	21	95	4	75	64	4	2	28	1.26
15538135--15538179	22	2.1	21	88	8	65	68	2	2	26	1.12
15538149--15538211	34	1.9	31	81	9	72	68	3	6	22	1.27
15550309--15550348	18	2.2	18	90	0	62	27	0	0	72	0.85
15554984--15555019	18	1.9	19	88	5	56	33	11	8	47	1.69
15555567--15555599	3	11.0	3	100	0	66	66	0	0	33	0.92
15556055--15556096	15	2.6	16	81	14	50	52	2	2	42	1.27
15575322--15575352	14	2.2	14	94	0	53	22	35	0	41	1.54
15584426--15584503	26	2.9	27	82	3	113	33	42	6	17	1.75
15584834--15584859	8	3.2	8	100	0	52	38	11	26	23	1.89
15587669--15587728	29	2.1	29	96	0	111	36	26	11	25	1.90
15589405--15589464	29	2.1	29	100	0	120	50	23	0	26	1.50
15601184--15601238	27	2.1	26	83	10	67	50	0	10	38	1.37
15602030--15602157	67	1.9	66	81	9	152	32	7	18	41	1.79
15603583--15603841	140	1.8	139	81	6	317	44	16	7	31	1.75
15609973--15610298	162	2.0	162	82	1	393	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15610137--15611184	186	5.6	185	81	6	1033	36	11	11	41	1.77
15610137--15611184	373	2.8	369	83	4	1151	36	11	11	41	1.77
15611916--15611995	25	3.2	25	68	7	65	20	11	30	38	1.87
15611928--15611969	13	3.3	13	80	6	50	16	9	35	38	1.81
15612910--15612938	10	2.9	10	100	0	58	41	0	10	48	1.37
15614213--15614267	3	18.3	3	100	0	110	32	0	0	67	0.91
15627926--15627959	18	1.9	17	88	5	50	52	8	0	38	1.33
15628207--15628557	181	1.9	180	91	1	569	27	17	14	39	1.89
15628642--15628672	12	2.7	12	95	5	55	51	19	0	29	1.47
15628643--15628677	11	3.1	11	91	4	52	57	17	0	25	1.40
15629597--15629627	16	2.0	16	93	6	55	22	0	0	77	0.77
15629898--15629969	13	5.5	13	81	0	81	13	5	25	55	1.60
15629897--15629969	26	2.8	26	85	0	92	15	5	24	54	1.61
15630079--15630135	24	2.3	25	79	11	64	35	1	0	63	1.05
15630231--15630265	9	3.7	9	88	11	52	25	0	0	74	0.82
15630232--15630286	17	3.2	17	82	10	60	23	1	1	72	1.04
15631161--15631204	20	2.2	20	87	0	61	77	0	2	20	0.88
15631175--15631209	13	2.8	13	91	4	54	77	0	2	20	0.90
15631469--15631561	39	2.3	40	83	1	116	43	7	10	38	1.68
15631474--15631596	40	3.1	39	82	4	122	45	9	10	34	1.72
15631536--15631746	38	5.5	38	76	4	165	46	15	9	27	1.77
15637045--15637109	9	7.6	8	75	20	53	73	4	0	21	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15637046--15637111	13	5.1	13	80	8	73	74	6	0	19	1.03
15637046--15637111	17	3.8	17	77	15	64	74	6	0	19	1.03
15640751--15640782	15	2.3	15	89	10	50	53	9	21	15	1.70
15646491--15646716	113	2.0	113	100	0	452	32	15	9	42	1.79
15652389--15652708	162	2.0	163	87	3	466	35	12	12	39	1.80
15652546--15653575	186	5.5	187	84	2	1215	37	10	11	40	1.76
15654338--15654422	12	6.9	12	68	5	53	20	10	30	38	1.86
15654335--15654393	25	2.4	25	80	2	66	23	8	28	38	1.84
15661748--15661779	13	2.5	13	100	0	64	40	21	28	9	1.84
15670223--15670261	17	2.3	17	90	0	60	51	5	0	43	1.24
15670492--15670822	181	1.8	180	94	3	594	25	19	15	40	1.90
15671879--15671911	17	2.0	17	88	5	50	24	0	0	75	0.80
15672167--15672251	13	6.6	13	78	6	84	15	8	23	52	1.69
15672374--15672412	3	12.7	3	94	5	69	33	0	0	66	0.92
15672531--15672568	10	3.8	10	82	10	51	26	0	0	73	0.83
15672533--15672594	9	6.8	9	77	15	65	22	1	1	74	1.00
15672534--15672594	19	3.3	18	80	17	72	22	1	1	73	1.01
15672532--15672594	17	3.4	18	79	16	76	22	1	1	74	0.99
15673531--15673599	21	3.6	18	70	16	50	76	0	4	18	0.94
15673511--15673591	21	3.7	21	77	9	65	74	1	4	19	1.08
15673515--15673604	23	4.1	22	76	13	71	75	1	4	18	1.03
15673561--15673604	17	2.5	17	89	10	63	77	0	4	18	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15673560--15673605	6	7.8	6	80	9	51	78	0	4	17	0.91
15673551--15673605	12	4.9	11	80	8	58	78	0	3	18	0.90
15673851--15673945	39	2.4	39	82	6	113	44	8	10	36	1.69
15679457--15679522	13	5.1	13	75	8	55	71	6	1	21	1.16
15679430--15679511	22	3.6	22	67	30	57	68	6	3	21	1.28
15679417--15679516	48	2.1	49	81	9	116	69	6	3	22	1.25
15686397--15686447	19	2.7	19	84	0	75	25	21	17	35	1.95
15686448--15686524	25	3.0	26	77	9	70	20	7	22	49	1.74
15686784--15686837	18	3.2	17	82	12	67	22	1	0	75	0.89
15686796--15686837	11	3.8	11	78	9	50	21	0	0	78	0.75
15686791--15686831	15	2.9	15	82	7	50	24	0	0	75	0.80
15688076--15688316	125	1.9	122	81	8	281	29	12	17	40	1.86
15688334--15688530	61	3.2	60	78	10	159	31	15	15	37	1.88
15691049--15691080	16	2.0	17	88	11	50	59	3	0	37	1.13
15692890--15692955	31	2.1	31	88	0	96	42	13	21	22	1.88
15693179--15693420	32	7.5	32	74	9	163	31	15	17	35	1.91
15693186--15693513	65	5.1	64	74	6	234	31	16	18	33	1.93
15693335--15693554	93	2.4	93	83	0	260	30	17	20	30	1.96
15693300--15693555	32	8.2	32	72	8	93	30	17	21	31	1.96
15694922--15694958	18	2.0	19	89	5	58	8	18	0	72	1.08
15694914--15694965	26	2.0	27	88	11	81	7	21	0	71	1.11
15695918--15696037	41	2.9	41	84	0	159	33	11	12	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15701087--15701133	12	3.8	12	83	10	58	17	6	21	55	1.64
15701093--15701137	13	3.5	13	84	0	63	17	4	24	53	1.62
15701291--15701336	24	1.9	24	86	8	67	26	2	0	71	0.97
15701426--15701474	19	2.5	21	83	16	77	24	4	0	71	1.03
15701424--15701473	17	2.7	18	87	9	66	24	4	0	72	1.02
15701424--15701479	16	3.3	17	75	7	51	23	3	0	73	0.99
15706146--15706201	21	2.7	21	83	10	71	25	26	17	30	1.97
15706329--15706375	24	1.9	25	86	4	69	68	2	2	27	1.13
15713042--15713096	25	2.2	26	83	9	69	30	9	1	58	1.40
15714370--15714416	12	3.6	13	77	8	51	87	0	6	6	0.68
15714370--15714416	15	3.2	15	88	8	62	87	0	6	6	0.68
15716417--15716482	22	2.9	23	79	4	89	31	18	16	33	1.93
15716417--15716490	23	3.3	23	78	3	78	32	17	16	33	1.92
15716615--15716718	23	4.5	23	72	0	82	32	20	16	30	1.94
15716618--15716722	46	2.3	46	81	3	122	32	20	15	32	1.93
15717100--15717246	42	3.4	43	79	4	172	33	12	12	40	1.82
15717100--15717264	42	3.9	42	78	4	143	32	12	14	40	1.83
15718488--15718533	21	2.2	20	84	3	56	67	0	4	28	1.10
15718618--15718661	13	3.3	13	81	12	54	75	0	2	22	0.92
15718620--15718662	14	2.9	16	76	16	56	74	0	2	23	0.93
15719779--15719824	21	2.2	20	84	3	56	67	0	4	28	1.10
15719911--15719951	14	3.0	13	82	10	55	75	0	2	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15721202--15721242	14	3.0	13	82	10	55	75	0	2	21	0.92
15721576--15721634	26	2.3	25	76	2	64	76	8	3	11	1.13
15729052--15729076	9	2.8	9	100	0	50	84	8	8	0	0.79
15729022--15729082	23	2.6	23	84	5	77	83	6	6	3	0.89
15730021--15730088	24	2.8	23	76	10	64	47	2	2	47	1.32
15730458--15730498	15	2.7	16	78	21	52	46	2	0	51	1.14
15730905--15730955	22	2.4	21	86	3	66	31	1	7	58	1.37
15739940--15739993	15	3.6	14	81	18	65	51	1	0	46	1.11
15740242--15740293	23	2.4	21	81	12	52	44	5	1	48	1.38
15759695--15759759	22	3.0	22	95	0	112	46	7	9	36	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84