genome.fa.s157.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  4  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286736--290503	181	20.9	179	72	11	1519	40	8	9	41	1.68
290730--291146	182	2.3	178	81	6	448	39	9	8	42	1.68
291323--291367	21	2.1	22	91	4	74	22	8	4	64	1.40
291438--292015	181	3.2	178	78	6	569	40	9	9	41	1.69
292020--292103	42	2.0	42	97	0	159	29	13	9	47	1.74
292284--292354	25	2.8	25	66	8	72	49	4	5	40	1.46
292166--292517	190	1.9	189	85	0	488	44	7	5	42	1.55
292556--294577	357	5.6	352	75	9	1031	40	8	9	41	1.68
292527--294594	179	11.5	180	73	7	1353	40	8	9	41	1.68
294269--294302	17	2.0	17	88	0	50	47	2	14	35	1.60
294456--294748	154	1.9	152	82	8	362	37	7	10	44	1.67
294608--295914	182	7.3	178	77	7	1139	38	8	10	43	1.69
294614--295935	538	2.5	536	81	3	1548	38	8	10	43	1.69
296070--297616	181	8.7	175	73	12	751	41	8	10	40	1.70
296158--297456	181	7.2	179	75	8	942	40	8	10	40	1.71
297299--297616	163	2.0	163	80	2	370	42	8	9	39	1.68
297618--304099	181	36.0	180	73	10	3673	39	8	10	41	1.69
296070--304099	360	22.2	360	70	11	3332	40	8	10	41	1.70
299849--299873	12	2.1	12	100	0	50	44	8	8	40	1.63
299999--300050	18	2.9	18	72	13	54	42	5	11	40	1.65
296100--316590	898	23.0	890	72	11	8495	40	8	10	41	1.69
304114--306127	181	11.2	178	74	8	1273	39	8	9	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304137--312088	357	22.3	358	72	11	1789	39	8	10	41	1.69
304114--312099	538	14.9	538	75	8	4823	39	8	10	41	1.69
305972--306286	158	2.0	159	85	1	427	36	9	9	45	1.68
306130--312105	181	33.4	180	74	8	3720	39	8	10	41	1.69
306993--308689	176	9.5	177	72	10	435	40	7	10	41	1.68
311022--311408	180	2.2	179	79	7	403	39	7	12	40	1.72
311998--312257	141	1.8	141	79	4	301	41	7	11	39	1.69
312116--315422	181	18.7	181	70	13	1034	40	7	9	41	1.67
312936--312968	17	2.0	17	88	5	50	48	0	12	39	1.40
312749--313047	160	1.9	160	81	2	368	41	8	9	41	1.66
312909--315432	181	14.2	181	73	9	1546	40	7	9	42	1.66
312299--316457	352	11.8	349	71	13	1845	40	7	9	41	1.66
315449--316614	179	6.5	181	80	6	1060	41	8	8	42	1.65
315920--315971	18	2.9	18	72	13	54	42	7	9	40	1.66
318733--318804	15	5.1	15	71	10	53	34	4	11	50	1.57
318935--318980	19	2.5	19	89	6	69	82	2	2	13	0.85
318934--318980	24	2.0	24	87	4	69	80	2	2	14	0.89
319727--319813	3	29.3	3	90	2	140	64	1	2	32	1.13
319904--320352	181	2.5	181	79	8	500	40	8	9	41	1.68
320456--322116	181	9.2	180	75	7	1201	40	8	9	41	1.67
320456--322056	363	4.4	357	75	8	1156	40	8	9	41	1.67
322131--322183	18	3.0	18	81	10	65	39	11	3	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322136--322720	182	3.2	179	79	6	592	40	9	8	42	1.66
323054--323139	43	2.0	43	97	0	163	45	13	8	32	1.74
323114--325396	180	12.8	177	74	9	1392	40	10	8	40	1.69
323169--325396	181	12.5	179	74	8	909	40	10	8	40	1.69
323115--324861	713	2.5	711	78	6	1634	41	10	7	40	1.68
323198--325396	358	6.2	355	74	7	1623	40	10	8	40	1.69
325474--326723	181	7.0	181	75	7	974	38	7	10	43	1.67
325474--329845	357	12.4	356	74	11	2855	40	8	10	41	1.68
326722--329845	361	8.8	361	75	9	2441	40	8	10	40	1.68
327449--329845	181	13.5	181	75	7	1765	40	8	10	40	1.68
328265--329845	180	8.9	179	75	9	1082	40	8	9	41	1.69
329846--330972	7	159.3	7	76	8	649	39	38	4	18	1.70
329914--330647	85	8.7	84	78	9	401	36	39	5	17	1.74
330745--330786	16	2.6	16	92	0	66	50	35	0	14	1.43
332406--332443	20	1.9	20	89	10	60	28	5	2	63	1.30
332599--332650	22	2.4	21	81	15	61	38	1	9	50	1.46
338107--338142	16	2.2	16	100	0	72	50	19	0	30	1.48
340075--340155	27	2.9	28	81	3	110	35	20	8	34	1.84
345879--345910	3	10.7	3	100	0	64	34	0	0	65	0.93
348978--349030	27	2.0	27	100	0	106	26	9	26	37	1.87
352813--352848	17	2.1	18	89	5	56	33	5	11	50	1.61
352940--352986	19	2.4	19	92	3	76	34	0	12	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353711--353757	22	2.1	22	96	0	85	27	6	4	61	1.39
357192--357242	12	4.0	13	82	10	61	72	0	17	9	1.11
357160--357241	39	2.1	40	88	4	123	73	0	17	9	1.09
358667--358827	43	3.7	44	76	6	150	31	9	12	45	1.75
358957--359029	38	2.0	38	86	5	105	30	8	19	42	1.80
359252--359309	17	3.4	17	83	9	73	29	12	8	50	1.69
359155--359309	18	8.8	18	73	12	99	27	16	10	45	1.79
360285--360309	13	1.9	13	100	0	50	16	0	4	80	0.87
360285--360343	21	2.5	23	80	17	68	18	5	3	72	1.17
360479--360554	12	6.4	12	71	14	68	32	1	5	60	1.27
360491--360561	23	3.0	24	86	13	112	30	1	8	59	1.36
360550--360612	31	2.0	30	85	11	83	31	3	14	50	1.58
360588--360634	19	2.4	19	89	10	69	36	4	10	48	1.57
362140--362171	13	2.5	13	95	5	57	81	18	0	0	0.70
362131--362191	8	7.0	8	74	17	50	78	16	0	4	0.91
362548--362616	25	2.9	24	76	6	68	33	43	10	13	1.77
362589--362658	24	2.9	25	74	6	72	32	42	8	15	1.77
363483--363535	3	17.3	3	80	3	52	62	5	3	28	1.35
363483--363526	18	2.4	19	92	3	72	61	4	4	29	1.36
363494--363535	18	2.3	18	91	0	66	64	7	2	26	1.32
363898--364306	30	13.8	28	73	13	123	47	31	0	19	1.56
363907--364201	7	40.4	7	66	12	85	47	32	1	18	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363901--364034	71	1.9	73	85	6	193	49	29	2	19	1.60
363964--364308	30	12.0	29	74	12	246	46	32	0	20	1.55
363964--364356	59	6.9	58	77	10	291	47	31	0	19	1.55
364147--364233	8	11.6	8	72	19	64	51	27	1	19	1.54
364035--364202	23	7.5	22	71	18	91	48	33	0	17	1.48
364279--364318	21	1.9	21	89	0	62	52	25	2	20	1.59
364249--364414	51	3.4	51	76	16	152	50	30	0	18	1.52
364280--364326	21	2.2	21	84	3	58	53	27	2	17	1.55
364294--364357	30	2.1	30	88	5	94	53	28	1	17	1.53
364302--364400	44	2.2	45	85	8	132	51	30	1	17	1.52
365781--365835	11	4.9	11	82	8	58	1	10	5	81	0.92
365780--365836	17	3.4	17	76	9	62	1	10	5	82	0.90
365780--365836	6	9.8	6	79	11	57	1	10	5	82	0.90
371862--371957	48	2.0	47	97	2	183	26	14	21	37	1.92
374197--374248	17	3.1	18	74	23	51	59	0	0	40	0.97
381028--381069	18	2.3	18	95	0	75	2	0	54	42	1.13
381025--381069	12	3.8	12	82	11	56	2	0	55	42	1.12
381815--384183	806	2.9	797	82	6	2720	40	10	8	40	1.69
386247--386279	17	1.9	17	93	0	57	3	6	0	90	0.52
386247--386282	9	4.1	9	89	3	56	2	8	0	88	0.59
387214--387260	24	1.9	25	86	4	69	48	6	4	40	1.48
387238--387391	48	3.2	48	80	8	186	43	16	11	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388167--388210	20	2.2	20	84	8	54	9	11	4	75	1.19
395732--395790	21	2.8	21	78	0	73	18	25	28	27	1.98
409786--409840	28	2.0	27	85	3	74	72	3	1	21	1.09
414222--414258	18	2.0	19	89	5	58	48	0	2	48	1.15
414311--414394	23	3.7	22	73	13	64	58	2	4	34	1.32
414533--414727	101	1.9	99	81	11	234	42	3	8	45	1.51
418987--419028	20	2.0	21	86	13	59	23	7	7	61	1.47
419602--419626	13	1.9	13	100	0	50	32	0	0	68	0.90
419861--419924	2	32.0	2	87	0	92	48	6	0	45	1.27
424406--424482	25	3.3	22	81	12	59	70	5	2	22	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84