genome.fa.s157.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  64  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14374456--14374499	9	5.0	9	83	10	56	22	0	2	75	0.92
14374467--14374505	17	2.3	17	100	0	78	23	0	5	71	1.05
14374449--14374499	13	4.0	13	78	16	54	21	0	1	76	0.88
14374378--14374621	128	1.9	128	97	0	461	22	19	12	45	1.84
14379331--14379374	23	1.9	23	95	0	79	79	0	9	11	0.93
14380185--14380229	20	2.2	20	84	11	56	73	2	15	8	1.18
14380953--14381057	29	3.6	28	81	13	108	75	0	11	12	1.10
14380953--14381036	27	3.1	26	78	20	75	76	1	10	11	1.09
14380980--14381070	8	11.1	8	77	21	75	74	0	13	12	1.07
14380970--14381075	18	5.8	17	74	22	74	74	0	13	12	1.07
14380980--14381043	9	7.0	9	87	8	94	78	0	10	10	0.98
14379215--14381704	810	3.0	804	85	8	3063	41	10	17	30	1.83
14381028--14381077	13	3.8	13	87	7	75	72	0	16	12	1.13
14380975--14381077	27	3.7	26	75	22	61	74	0	13	11	1.07
14381027--14381085	27	2.1	28	87	9	86	71	1	15	11	1.23
14382553--14383019	84	5.6	85	80	4	450	21	12	18	47	1.81
14382553--14383023	165	2.8	166	79	4	480	21	12	18	47	1.82
14383253--14383320	4	17.5	4	72	11	52	23	7	2	66	1.31
14383393--14383417	11	2.3	11	100	0	50	64	0	8	28	1.22
14388191--14388229	17	2.2	17	86	4	51	12	2	33	51	1.54
14389145--14389186	19	2.1	20	86	8	59	69	9	4	16	1.33
14402615--14402679	22	3.1	21	77	12	64	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14403652--14403701	17	2.7	20	73	23	54	50	0	0	50	1.00
14403785--14403841	22	2.5	23	80	11	64	47	1	0	50	1.11
14403843--14403890	22	2.2	22	92	0	78	37	2	2	58	1.22
14410288--14410329	16	2.6	16	100	0	84	69	0	0	30	0.89
14410257--14410321	27	2.4	28	76	7	71	61	1	0	36	1.05
14410460--14410505	23	1.9	25	86	8	69	50	2	2	45	1.26
14410470--14410551	28	2.9	30	73	15	84	51	1	2	45	1.22
14410459--14410518	23	2.6	21	78	19	66	48	1	1	48	1.21
14410942--14411004	30	2.2	30	88	5	94	65	0	1	33	1.03
14415353--14415399	23	2.0	23	87	0	67	29	17	19	34	1.94
14416823--14416847	2	12.5	2	100	0	50	48	0	0	52	1.00
14418156--14418224	23	3.0	23	100	0	138	17	4	43	34	1.69
14419323--14419416	41	2.3	41	82	8	111	37	10	22	29	1.88
14419338--14419426	41	2.2	41	80	8	101	46	12	17	23	1.82
14423157--14423238	42	2.0	42	82	0	101	40	9	15	34	1.81
14424788--14424832	18	2.8	15	78	18	54	42	20	6	31	1.77
14425254--14425311	18	3.3	18	81	9	66	50	8	0	41	1.33
14425257--14425340	17	4.6	18	72	16	66	55	4	0	39	1.21
14425637--14425819	59	3.1	58	73	5	163	55	16	3	24	1.57
14438777--14438806	4	7.5	4	100	0	60	76	0	0	23	0.78
14439038--14439097	19	3.2	19	82	15	79	40	38	1	20	1.62
14440054--14440094	8	4.7	9	85	14	59	80	2	7	9	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14440199--14440253	25	2.2	25	93	0	92	27	12	7	52	1.65
14444095--14444132	19	2.0	19	89	0	58	71	18	0	10	1.14
14450944--14451003	32	2.0	32	83	9	81	31	1	0	66	1.01
14451687--14452050	64	5.6	65	75	8	278	29	15	18	36	1.92
14451670--14452249	33	17.7	33	73	6	322	28	15	18	37	1.91
14451863--14451981	32	3.7	32	79	8	134	30	14	16	38	1.89
14451669--14451978	133	2.4	129	78	8	290	29	15	18	37	1.91
14451663--14452074	65	6.3	64	76	8	298	29	15	17	37	1.91
14452511--14452552	22	1.9	22	90	0	66	23	23	23	28	2.00
14453578--14453620	16	2.4	18	85	14	63	4	16	0	79	0.90
14454854--14454897	11	3.8	11	85	8	52	4	13	0	81	0.83
14458405--14458446	18	2.3	18	84	8	50	7	2	9	80	0.97
14461696--14461762	28	2.4	29	75	9	68	11	11	13	62	1.54
14462732--14462773	8	5.1	8	81	16	50	19	2	0	78	0.86
14462784--14462824	22	1.9	21	90	5	64	31	0	0	68	0.90
14462775--14462828	22	2.3	23	76	17	58	31	1	0	66	1.02
14462732--14462831	9	10.7	9	73	22	64	26	2	0	72	0.96
14463441--14463477	12	3.2	12	92	7	67	43	5	16	35	1.71
14465934--14465996	25	2.5	25	84	5	83	41	4	26	26	1.76
14466246--14466287	22	1.9	22	95	0	75	21	7	26	45	1.77
14467068--14467116	25	1.9	26	83	4	64	44	6	24	24	1.76
14467440--14467563	52	2.4	52	87	0	167	38	8	21	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14468222--14468255	17	2.0	17	88	11	52	0	11	14	73	1.10
14468740--14468774	8	4.4	8	92	0	52	51	11	0	37	1.38
14470823--14470935	37	3.0	37	88	1	163	35	19	8	36	1.83
14480738--14480770	14	2.4	14	89	0	57	78	3	6	12	1.04
14481239--14481264	6	4.3	6	100	0	52	84	0	15	0	0.62
14483292--14483396	35	3.0	35	82	8	124	29	18	13	39	1.88
14483338--14483409	35	2.1	35	83	0	90	27	19	15	37	1.92
14483606--14483676	32	2.2	33	82	12	92	18	9	25	46	1.79
14483687--14483827	57	2.5	54	78	7	140	26	17	12	43	1.85
14495031--14495077	19	2.4	21	79	13	64	44	19	10	25	1.82
14495837--14495904	7	9.6	7	70	3	55	47	30	1	20	1.59
14495823--14495903	14	5.8	13	77	10	63	46	28	2	22	1.64
14495837--14495888	21	2.5	21	80	0	68	48	30	1	19	1.60
14498106--14498154	15	3.2	15	77	5	62	40	14	14	30	1.85
14498105--14498173	31	2.2	31	84	5	95	43	15	11	28	1.82
14502132--14502609	36	13.2	36	74	10	269	28	15	8	47	1.75
14506284--14506689	143	2.8	142	79	7	437	44	11	12	32	1.77
14507368--14507531	50	3.3	49	81	7	195	34	17	13	35	1.88
14507542--14507592	2	25.5	2	95	0	93	0	47	0	52	1.00
14516327--14516368	17	2.5	17	84	0	66	4	42	16	35	1.69
14519089--14519133	3	15.0	3	95	0	81	31	0	2	66	1.04
14519074--14519124	21	2.4	21	87	6	68	29	3	5	60	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14522807--14523206	145	2.8	143	84	3	509	42	12	12	33	1.79
14524391--14524449	31	1.9	31	86	6	84	44	13	8	33	1.74
14527391--14527594	59	3.4	58	79	7	180	30	14	7	47	1.72
14527424--14527598	59	2.9	57	81	6	197	30	12	8	49	1.69
14528803--14528919	33	3.5	33	80	4	128	49	8	14	27	1.72
14528890--14529061	68	2.5	67	82	10	172	48	12	14	24	1.79
14528862--14529068	101	2.0	102	80	2	229	47	12	15	25	1.80
14528912--14529068	33	4.7	33	73	10	138	46	13	15	24	1.82
14529099--14529207	33	3.3	33	76	2	103	41	13	18	26	1.88
14532180--14532228	19	2.6	19	87	6	64	44	40	8	6	1.59
14532321--14532373	20	2.7	20	90	0	88	49	28	3	18	1.65
14533810--14533891	11	6.9	12	74	16	57	14	2	3	79	0.98
14533810--14533891	6	13.8	6	72	18	57	14	2	3	79	0.98
14533825--14533893	22	3.1	22	74	14	70	14	0	4	81	0.84
14533825--14533897	24	3.0	24	74	11	76	13	0	5	80	0.87
14533961--14534132	31	5.5	31	75	5	114	42	15	22	20	1.89
14534055--14534226	62	2.8	62	77	3	175	40	11	24	23	1.87
14534044--14534256	93	2.3	93	77	1	230	39	12	24	23	1.89
14534117--14534225	31	3.5	31	80	7	123	40	8	25	25	1.83
14534319--14534439	32	3.8	32	80	5	129	27	14	21	37	1.92
14534629--14534766	22	6.3	22	75	0	123	27	20	20	31	1.97
14534622--14534748	66	1.9	66	86	0	182	28	19	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14536221--14536256	15	2.3	15	90	4	54	0	16	0	83	0.65
14536207--14536255	12	3.7	14	76	13	50	2	20	0	77	0.87
14538769--14539043	139	2.0	138	88	2	408	19	9	13	58	1.61
14539112--14539158	19	2.5	20	80	16	55	12	17	8	61	1.55
14541297--14541332	18	2.1	18	90	10	58	27	2	0	69	1.02
14542465--14542520	16	3.4	16	72	18	53	41	0	3	55	1.17
14546450--14546557	42	2.5	43	82	5	121	45	12	10	32	1.75
14546590--14546640	16	3.2	16	85	0	75	45	15	13	25	1.83
14546789--14546869	17	4.9	16	77	4	81	41	16	12	29	1.84
14546774--14546869	33	2.9	33	87	1	120	39	15	12	32	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84