genome.fa.s157.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  40  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9413159--9413197	2	19.5	2	100	0	78	48	0	0	51	1.00
9414637--9414753	55	2.1	58	81	9	136	51	3	9	35	1.51
9414912--9414941	10	3.0	10	90	0	51	53	0	0	46	1.00
9415912--9415962	26	1.9	26	84	4	66	37	1	7	52	1.42
9417881--9417931	26	2.0	26	84	7	68	33	11	15	39	1.84
9424058--9424107	19	2.6	20	75	15	52	48	8	0	44	1.32
9424936--9425036	50	2.0	50	88	3	150	46	10	19	22	1.81
9425062--9425110	12	4.0	12	75	15	55	34	12	0	53	1.39
9425192--9425246	28	2.0	28	82	13	69	34	7	1	56	1.38
9426176--9426241	25	2.7	25	88	2	89	19	4	19	56	1.59
9428297--9428547	98	2.5	101	84	10	350	35	11	8	44	1.71
9432448--9432489	18	2.3	18	95	4	75	26	7	11	54	1.62
9441188--9441236	5	8.8	5	85	14	53	77	2	4	16	1.01
9441613--9441664	21	2.5	20	81	3	59	61	11	1	25	1.40
9444495--9444534	13	2.9	13	82	10	53	27	0	5	67	1.11
9444491--9444534	14	3.0	15	80	12	56	27	0	6	65	1.17
9444465--9444534	30	2.4	30	81	9	74	25	1	7	65	1.26
9444936--9445064	61	2.1	62	82	5	163	28	7	12	51	1.67
9447455--9447494	20	2.0	20	85	5	53	57	0	5	37	1.21
9447452--9447552	21	5.0	21	72	10	59	55	1	1	40	1.22
9447695--9447861	11	16.3	11	67	18	67	35	2	2	59	1.24
9447730--9447826	21	4.6	20	77	19	67	42	1	1	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9447700--9447787	18	4.6	18	73	17	79	35	2	2	60	1.22
9447754--9447819	23	2.8	22	72	19	53	39	0	1	59	1.07
9448070--9448152	18	4.4	18	77	7	85	42	1	1	55	1.15
9448256--9448339	25	3.4	24	77	9	80	44	0	1	54	1.07
9448200--9448339	60	2.3	60	82	11	155	42	1	0	55	1.14
9448239--9448377	13	11.2	12	69	21	58	47	1	0	50	1.15
9448368--9448437	30	2.3	30	82	2	95	55	1	11	31	1.44
9449203--9449250	3	16.0	3	100	0	96	66	0	0	33	0.92
9450288--9450361	10	7.0	11	67	20	50	74	2	5	17	1.13
9455943--9455986	5	8.4	5	83	14	54	20	2	0	77	0.88
9455944--9455986	16	2.6	17	82	14	63	20	2	0	76	0.89
9455947--9455988	22	2.0	20	90	9	66	21	2	0	76	0.90
9457601--9457631	2	15.5	2	100	0	62	0	48	0	51	1.00
9460030--9460072	21	2.0	21	82	8	52	53	0	4	41	1.21
9460137--9460184	18	2.6	20	81	15	59	58	4	0	37	1.18
9466092--9466219	64	2.0	64	98	0	247	40	30	7	21	1.81
9468305--9468355	25	2.0	25	96	0	93	33	13	15	37	1.87
9485741--9485790	6	8.3	6	78	8	57	36	12	0	52	1.39
9485744--9485790	19	2.6	18	86	6	60	36	10	0	53	1.36
9485741--9485792	25	2.1	25	92	0	86	36	11	0	51	1.38
9488999--9489040	18	2.3	18	95	0	75	35	7	0	57	1.26
9489762--9489798	15	2.5	15	95	0	65	21	0	21	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9490509--9490679	63	2.8	61	78	12	143	37	12	9	40	1.76
9491946--9491971	2	13.0	2	100	0	52	50	0	0	50	1.00
9495354--9495427	36	2.0	38	86	7	107	27	22	9	40	1.85
9498388--9498432	10	4.5	10	78	10	56	60	8	0	31	1.28
9500001--9500030	8	3.9	8	95	4	53	0	6	0	93	0.35
9500001--9500030	15	1.9	15	93	6	51	0	6	0	93	0.35
9502375--9502485	55	2.0	55	96	0	204	55	15	8	20	1.65
9503587--9503651	28	2.4	26	78	16	69	53	7	3	35	1.45
9506817--9506867	15	3.5	15	89	2	68	64	0	1	33	1.05
9506961--9507010	25	2.0	24	85	11	66	38	0	2	60	1.09
9510225--9510276	25	2.0	26	88	3	79	59	0	1	38	1.08
9515864--9515900	16	2.4	16	90	4	58	67	2	0	29	1.04
9523867--9523894	3	9.3	3	100	0	56	64	0	35	0	0.94
9526043--9526446	203	2.0	203	98	0	781	35	22	19	22	1.96
9532404--9532445	16	2.4	18	88	7	61	28	0	0	71	0.86
9551551--9551597	20	2.2	21	88	7	69	70	2	0	27	0.99
9552158--9552202	18	2.4	18	82	10	56	48	0	2	48	1.13
9556244--9556274	16	1.9	16	93	0	53	54	9	0	35	1.33
9561082--9561121	21	1.9	21	85	10	55	50	12	22	15	1.77
9572374--9572405	15	2.1	15	94	5	55	84	0	15	0	0.63
9572875--9572904	1	30.0	1	93	0	51	96	0	3	0	0.21
9572875--9572909	14	2.6	14	90	4	54	91	0	8	0	0.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9572875--9572906	12	2.8	12	95	4	57	93	0	6	0	0.34
9574463--9574579	58	2.0	58	94	0	207	38	15	17	28	1.91
9577877--9577930	20	2.7	20	82	0	72	38	1	5	53	1.35
9578189--9578230	20	2.1	20	86	8	59	47	0	0	52	1.00
9578619--9578667	21	2.3	21	82	0	62	48	4	2	44	1.33
9578669--9578733	32	2.1	30	86	8	87	67	0	1	30	1.00
9579778--9579811	11	3.0	11	86	4	50	0	2	11	85	0.71
9581940--9581991	21	2.5	22	93	6	90	51	0	0	48	1.00
9581975--9582013	16	2.5	16	87	4	53	56	0	0	43	0.99
9582681--9582718	6	6.7	6	82	11	53	65	0	0	34	0.93
9582681--9582727	22	2.1	22	96	0	85	65	0	0	34	0.93
9582681--9582718	16	2.2	17	77	13	51	65	0	0	34	0.93
9585068--9585134	34	2.0	34	100	0	134	58	2	5	32	1.38
9592087--9592116	3	10.0	3	100	0	60	33	33	0	33	1.58
9593249--9593302	28	1.9	28	96	0	99	25	12	22	38	1.90
9593351--9593390	11	3.6	11	89	0	62	20	0	30	50	1.49
9593449--9593573	52	2.4	52	87	0	169	36	6	26	31	1.82
9593541--9593820	139	2.0	139	96	0	515	30	7	31	29	1.86
9594140--9594221	25	3.3	23	75	11	74	34	8	36	20	1.83
9594452--9594491	11	3.6	11	93	0	71	22	0	27	50	1.50
9594518--9594674	52	3.0	52	85	1	208	38	7	26	26	1.83
9594642--9594921	139	2.0	139	97	0	533	30	7	33	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9614112--9614146	18	1.9	18	94	0	61	48	0	0	51	1.00
9614510--9614758	134	1.9	134	89	0	392	40	17	17	24	1.90
9614738--9614785	22	2.2	22	88	0	69	31	18	22	27	1.97
9614625--9614894	108	2.5	108	83	5	310	38	18	19	23	1.93
9614854--9614910	22	2.6	22	81	10	80	26	21	26	26	1.99
9614737--9614975	130	1.8	130	86	3	345	38	17	20	23	1.93
9614737--9615020	132	2.2	130	82	5	349	37	16	20	25	1.93
9614880--9615117	109	2.2	110	79	2	255	39	16	19	24	1.92
9614999--9615455	219	2.1	218	85	2	616	39	17	19	23	1.92
9615314--9615367	22	2.5	22	96	0	99	27	16	27	27	1.97
9615582--9615651	22	3.2	22	82	6	88	25	17	25	31	1.97
9615775--9615886	41	2.7	41	86	8	156	30	16	20	33	1.94
9625455--9625499	22	2.0	21	87	8	63	44	0	0	55	0.99
9627479--9627518	19	2.1	19	100	0	80	52	10	0	37	1.35
9627593--9628101	253	2.0	252	92	1	851	54	5	6	33	1.50
9629531--9629571	21	1.9	22	85	5	57	46	0	2	51	1.14
9631220--9631394	92	1.9	92	96	0	323	29	21	16	33	1.95
9634627--9634659	5	6.8	5	86	6	50	18	0	0	81	0.68
9634664--9634710	18	2.6	18	80	12	51	76	4	4	14	1.09
9635411--9635498	16	5.6	16	76	14	85	68	0	6	25	1.14
9635404--9635553	20	6.5	24	67	21	72	68	1	5	25	1.19
9635424--9635501	30	2.5	34	84	12	96	70	0	6	23	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9635403--9635506	46	2.2	49	85	11	146	70	0	5	24	1.09
9635424--9635575	32	5.0	29	72	17	96	70	1	4	23	1.14
9635413--9635569	85	1.9	83	83	2	206	68	1	4	25	1.15
9635552--9635580	11	2.6	11	100	0	58	82	0	0	17	0.66
9636494--9636524	1	31.0	1	100	0	62	0	0	0	100	0.00
9639816--9639946	63	2.1	63	87	7	185	33	2	12	51	1.53
9643678--9643709	15	2.1	15	100	0	64	37	12	28	21	1.90
9644337--9644373	14	2.8	13	88	8	56	51	0	2	45	1.15
9647767--9647809	21	2.1	21	91	8	72	51	0	0	48	1.00
9651497--9651573	37	2.1	37	82	4	93	18	10	29	41	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84