genome.fa.s157.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  49  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11266357--11266418	27	2.2	30	77	16	69	48	1	4	45	1.33
11267527--11267612	44	2.0	43	84	6	111	53	2	0	44	1.13
11268510--11268548	19	2.1	18	85	4	51	46	2	0	51	1.14
11268531--11268594	25	2.5	26	73	17	62	54	1	0	43	1.09
11277187--11277312	26	5.0	25	69	16	64	34	2	3	60	1.26
11277242--11277319	19	4.2	18	76	12	68	29	1	2	66	1.13
11286614--11286662	16	2.9	17	72	6	55	24	10	0	65	1.23
11286851--11286890	21	2.0	19	85	9	53	25	2	0	72	0.97
11286923--11286965	19	2.2	20	91	4	70	9	6	9	74	1.22
11293885--11293909	2	12.5	2	100	0	50	48	0	0	52	1.00
11297567--11297594	5	5.6	5	100	0	56	60	0	0	39	0.97
11299005--11299032	11	2.5	11	100	0	56	60	0	0	39	0.97
11302585--11302684	28	3.6	28	95	0	173	28	24	16	32	1.96
11303490--11303528	20	2.0	20	89	0	60	48	0	0	51	1.00
11304319--11304429	27	4.1	27	73	16	72	30	3	1	63	1.21
11304303--11304429	66	1.9	65	88	1	191	31	3	2	62	1.26
11304345--11304402	20	2.8	20	76	7	64	31	3	1	63	1.21
11304351--11304447	27	3.6	27	78	15	94	30	2	4	62	1.25
11304744--11304781	18	2.1	18	90	5	58	10	0	23	65	1.23
11304893--11304925	16	2.0	17	88	5	50	15	3	12	69	1.30
11305800--11305861	30	2.1	30	90	0	97	38	6	14	40	1.72
11312496--11312551	12	4.3	14	82	13	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11312504--11312552	24	2.0	24	92	8	80	34	0	0	65	0.93
11314494--11314566	25	3.0	24	75	18	69	64	1	8	26	1.30
11314494--11314559	26	2.6	25	83	9	73	65	1	7	25	1.28
11324467--11324545	24	3.4	23	78	18	67	39	10	5	45	1.60
11324483--11324548	24	2.8	22	81	9	78	39	10	7	42	1.68
11336833--11336870	16	2.3	17	86	4	60	50	0	0	50	1.00
11337126--11337168	22	2.0	22	90	0	68	32	0	9	58	1.30
11337148--11337282	34	4.1	33	75	6	112	48	3	5	42	1.43
11337232--11337274	8	5.2	8	80	5	50	53	0	0	46	1.00
11340355--11340386	14	2.1	16	88	11	50	21	40	6	31	1.78
11344599--11344636	15	2.4	16	82	8	51	44	0	2	52	1.14
11358217--11358962	382	2.0	383	91	0	1208	38	6	11	44	1.66
11366826--11366863	13	3.0	13	88	3	51	47	15	7	28	1.74
11367120--11367144	3	8.3	3	100	0	50	68	0	0	32	0.90
11368088--11368189	6	16.7	6	83	4	105	68	6	0	23	1.19
11368796--11368885	21	4.3	20	71	9	65	38	7	11	42	1.69
11368811--11368900	42	2.1	42	81	4	101	37	10	8	43	1.70
11376832--11376864	16	2.0	17	88	5	50	33	0	0	66	0.92
11376824--11376874	24	2.1	25	82	10	61	37	0	0	62	0.95
11385237--11385421	101	1.8	101	86	0	271	50	15	4	28	1.64
11386502--11386604	36	2.9	36	91	1	154	37	16	12	33	1.86
11402999--11403059	19	3.3	19	77	9	54	63	3	6	26	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11402560--11403313	211	3.5	214	75	10	583	54	5	9	31	1.54
11403350--11404248	217	4.1	217	74	10	511	50	6	10	31	1.63
11404115--11404163	21	2.4	20	80	12	64	53	6	4	36	1.45
11427959--11427998	15	2.7	15	100	0	80	22	55	5	17	1.61
11435603--11435660	30	1.9	30	82	0	71	44	3	1	50	1.29
11437232--11437257	10	2.6	10	100	0	52	30	0	7	61	1.24
11438379--11438424	21	2.1	22	84	11	60	43	0	2	54	1.12
11438976--11439024	16	2.8	16	81	12	53	34	0	2	63	1.06
11439808--11440206	203	2.0	202	78	4	421	38	11	14	35	1.82
11440143--11440264	64	1.9	64	81	0	145	44	12	13	30	1.80
11442058--11442098	3	14.0	3	94	5	75	34	0	0	65	0.93
11442059--11442102	20	2.3	19	92	7	79	31	0	0	68	0.90
11442058--11442152	17	5.8	16	72	17	54	28	1	3	67	1.13
11442564--11442603	16	2.5	15	80	11	53	62	0	37	0	0.95
11443574--11443699	64	2.0	64	87	6	184	61	7	9	22	1.51
11443544--11443702	57	2.6	60	78	12	173	56	8	10	24	1.60
11446836--11446879	23	2.0	22	86	4	61	29	2	18	50	1.59
11448812--11448858	21	2.2	21	92	7	78	40	8	12	38	1.74
11449205--11449347	42	3.4	41	88	1	196	24	16	13	45	1.83
11449205--11449392	42	4.5	42	83	2	182	23	13	14	47	1.81
11449225--11449386	84	1.9	84	87	1	236	24	15	16	44	1.85
11449625--11449654	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11450409--11450442	13	2.8	12	86	8	50	26	0	5	67	1.13
11450437--11450467	16	1.9	16	93	0	53	9	9	0	80	0.90
11450661--11450703	16	2.8	15	80	16	52	79	2	2	16	0.95
11450662--11450702	17	2.4	18	76	12	50	80	2	2	14	0.92
11450661--11450702	9	5.0	8	81	18	50	80	2	2	14	0.90
11451071--11451262	54	3.6	54	79	9	221	52	6	13	28	1.64
11451071--11451262	55	3.6	53	77	10	203	52	6	13	28	1.64
11463298--11463345	18	2.8	16	77	17	51	72	2	2	22	1.05
11463303--11463364	20	3.2	20	78	15	60	69	1	1	27	1.07
11463519--11463551	17	2.0	17	88	5	50	15	3	9	72	1.21
11463768--11463826	26	2.3	25	80	11	66	33	0	3	62	1.12
11463778--11463832	19	2.8	20	81	10	69	34	0	1	63	1.05
11464339--11464371	17	1.9	17	100	0	66	18	18	6	57	1.60
11465191--11465223	2	16.5	2	100	0	66	48	0	0	51	1.00
11465288--11465318	15	2.1	15	100	0	62	32	6	29	32	1.83
11466616--11466655	20	2.0	21	85	5	55	52	2	0	45	1.14
11467274--11467387	31	3.8	31	82	9	130	38	2	3	55	1.31
11468075--11468351	145	1.9	146	86	6	402	41	5	4	48	1.47
11474050--11474086	16	2.2	17	90	4	58	18	2	5	72	1.15
11474187--11474212	13	2.0	13	100	0	52	46	0	0	53	1.00
11476133--11476180	19	2.5	19	93	0	87	50	6	8	35	1.58
11479693--11479747	22	2.5	22	87	0	74	49	3	12	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11479827--11479884	22	2.6	22	86	5	73	56	0	6	36	1.26
11479928--11479984	22	2.8	20	76	20	57	56	3	7	33	1.43
11480022--11480114	22	4.2	22	76	5	80	52	1	10	35	1.43
11480435--11480660	22	10.2	22	70	11	122	49	4	9	36	1.57
11480429--11480506	21	3.3	24	71	21	60	51	0	10	38	1.36
11480447--11480530	21	3.9	21	71	21	66	51	2	8	38	1.45
11480459--11480504	24	1.9	24	82	8	58	52	0	10	36	1.37
11480429--11480528	45	2.2	46	80	8	116	52	2	9	37	1.45
11480435--11480661	44	5.1	44	73	11	151	49	4	9	36	1.56
11480677--11480737	30	2.0	30	90	0	95	47	4	9	37	1.58
11480750--11480786	19	1.9	19	88	0	56	59	5	5	29	1.42
11480805--11480847	22	2.0	22	85	0	59	39	2	6	51	1.42
11480868--11480937	22	3.2	22	76	10	81	51	8	5	34	1.56
11480875--11480936	21	2.9	22	78	4	81	53	6	6	33	1.52
11480961--11481014	22	2.5	22	78	0	63	46	3	12	37	1.60
11481032--11481114	22	3.8	22	88	6	132	42	6	12	39	1.67
11481115--11481174	22	2.7	22	81	0	75	48	3	3	45	1.35
11481178--11481245	22	3.1	22	80	0	91	44	16	5	33	1.72
11481162--11481245	44	1.9	44	87	0	123	44	15	7	33	1.74
11481745--11481881	22	6.2	22	76	3	105	43	10	5	40	1.62
11481730--11481859	44	2.9	42	78	5	107	42	9	5	43	1.59
11482082--11482151	22	3.2	22	74	6	72	45	8	11	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11484050--11484080	14	2.1	15	94	5	55	64	3	0	32	1.09
11484355--11484484	4	32.8	4	72	16	67	30	3	0	65	1.16
11484385--11484470	27	3.5	24	78	17	88	31	4	1	62	1.23
11485325--11485533	58	3.5	59	89	2	312	49	5	7	37	1.54
11485415--11485632	103	2.1	103	89	3	330	47	5	7	39	1.54
11485475--11485566	43	2.1	44	93	4	159	45	4	7	42	1.52
11485520--11485649	60	2.2	59	82	9	176	50	5	6	38	1.50
11485608--11485640	14	2.2	16	89	10	52	48	6	3	42	1.43
11485607--11485652	14	3.1	15	81	15	51	54	6	2	36	1.39
11485505--11485650	60	2.5	57	77	11	168	50	5	5	39	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84