genome.fa.s157.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  50  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11485548--11485690	74	1.9	75	83	9	186	48	6	8	37	1.59
11485629--11485752	61	2.0	62	83	7	155	54	6	8	30	1.57
11494252--11494290	14	2.7	15	80	8	53	79	2	5	12	1.00
11495011--11495041	16	1.9	16	93	0	53	22	22	19	35	1.96
11495303--11495603	43	7.0	43	79	12	273	25	12	17	43	1.85
11495304--11495623	44	7.4	44	80	4	301	24	12	17	44	1.84
11495304--11495603	87	3.5	85	81	5	325	25	13	18	44	1.85
11495835--11495943	4	28.5	4	77	7	86	29	2	0	67	1.04
11495830--11495950	24	5.2	24	75	14	119	28	3	0	67	1.06
11495833--11495967	47	2.8	47	84	7	164	29	3	0	65	1.14
11496819--11497027	59	3.6	58	80	7	242	48	4	9	38	1.55
11496998--11497045	14	3.3	14	85	5	51	50	4	4	41	1.41
11497018--11497142	62	2.0	62	84	6	164	52	8	7	32	1.58
11507840--11507885	23	1.9	25	86	8	69	15	10	17	56	1.67
11513069--11513412	175	2.0	175	97	1	654	33	18	20	27	1.96
11515315--11515358	2	22.0	2	95	0	79	50	0	2	47	1.13
11516625--11516671	13	3.5	13	78	21	53	46	2	0	51	1.13
11516632--11516686	27	2.0	27	79	6	67	49	3	0	47	1.19
11523506--11523535	2	15.0	2	100	0	60	0	50	0	50	1.00
11527351--11527398	22	2.1	21	81	11	51	8	8	4	79	1.06
11527362--11527395	13	2.5	13	85	4	50	5	2	2	88	0.70
11530086--11530230	3	48.3	3	86	2	103	35	8	1	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11540165--11540252	27	3.2	27	90	3	149	35	20	3	40	1.69
11540174--11540263	28	3.2	28	90	3	155	37	16	3	42	1.65
11547009--11547051	13	3.3	13	81	12	61	76	2	13	6	1.08
11547016--11547058	13	3.2	13	80	6	50	79	2	9	9	1.03
11548309--11548351	19	2.4	17	84	7	50	76	4	6	11	1.13
11549191--11549221	2	15.5	2	100	0	62	51	0	0	48	1.00
11551535--11551589	16	3.6	16	69	14	53	18	1	36	43	1.61
11551535--11551647	29	3.9	29	78	9	122	19	2	31	46	1.64
11551535--11551648	30	3.9	30	79	5	99	19	2	31	46	1.63
11551939--11551992	3	18.0	3	100	0	108	33	0	0	66	0.92
11553749--11553829	37	2.2	37	86	6	110	59	16	11	13	1.61
11554007--11554049	22	2.0	22	90	0	68	41	18	9	30	1.82
11554197--11554287	22	4.1	22	69	8	76	34	15	20	29	1.94
11553997--11554482	190	2.6	192	82	3	536	40	15	19	24	1.90
11554392--11554454	20	3.0	20	72	17	56	25	15	28	30	1.96
11554410--11554471	22	2.8	22	77	2	61	29	16	29	25	1.96
11554832--11554954	41	3.0	41	92	0	192	34	14	16	34	1.89
11555805--11555842	8	4.8	8	90	9	60	13	2	0	84	0.73
11555805--11555842	17	2.4	16	91	8	60	13	2	0	84	0.73
11560559--11560603	17	2.5	19	82	10	67	0	6	8	84	0.78
11562331--11562443	14	7.8	14	70	16	61	19	0	29	50	1.54
11562327--11562459	30	4.5	29	77	10	135	21	0	30	48	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11570569--11570627	19	3.1	19	70	7	57	45	3	0	50	1.18
11578532--11578569	20	1.9	20	88	0	58	28	2	2	65	1.19
11579413--11579472	27	2.2	25	80	13	66	31	1	1	65	1.13
11581055--11581088	18	1.9	18	88	5	52	73	0	0	26	0.83
11581321--11581376	14	3.9	14	69	17	51	14	0	10	75	1.06
11581324--11581363	20	1.9	22	90	10	66	15	0	15	70	1.18
11581324--11581368	20	2.2	20	84	11	56	15	0	13	71	1.15
11581357--11581397	21	1.9	21	85	5	55	17	2	2	78	0.98
11581548--11581629	34	2.4	35	79	6	96	35	4	9	50	1.57
11581610--11581656	21	2.2	21	85	7	60	38	0	8	53	1.32
11589199--11589525	174	1.9	174	85	6	457	35	16	19	28	1.93
11592242--11592306	21	2.9	23	73	17	82	23	24	13	38	1.91
11593144--11593172	14	2.1	14	100	0	58	62	0	0	37	0.96
11608068--11608106	20	2.0	20	85	10	53	84	2	10	2	0.81
11620839--11620880	19	2.2	19	95	0	75	23	14	23	38	1.92
11624080--11624163	30	2.8	30	87	5	109	35	8	3	52	1.49
11624106--11624207	30	3.4	30	83	6	118	41	8	2	47	1.50
11626737--11626791	27	2.1	26	86	10	76	52	0	1	45	1.11
11633476--11633584	42	2.4	44	79	14	116	43	0	0	55	1.12
11633785--11633825	16	2.6	16	84	0	55	17	2	2	78	0.98
11635718--11635798	29	2.6	31	77	14	87	45	2	0	51	1.14
11636124--11636164	22	1.9	21	85	14	57	24	0	2	73	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11640036--11640083	19	2.5	20	86	10	64	54	4	0	41	1.20
11641004--11641062	21	2.8	21	68	2	55	38	0	10	50	1.36
11641077--11641131	21	2.6	21	85	0	65	32	7	10	49	1.65
11641092--11641154	21	3.0	21	83	2	72	33	6	12	47	1.67
11641176--11641269	21	4.6	21	68	10	68	34	8	8	48	1.64
11641574--11641700	22	5.8	22	75	9	98	33	12	5	48	1.64
11641668--11641719	22	2.4	22	83	0	59	36	9	9	44	1.70
11641710--11641768	21	2.8	20	71	16	57	38	1	5	54	1.33
11642509--11642537	15	2.0	15	93	6	51	79	6	0	13	0.93
11643324--11643348	13	1.9	13	100	0	50	28	0	0	72	0.86
11643437--11643491	28	2.0	28	85	0	74	27	1	9	61	1.36
11649061--11649091	3	10.3	3	100	0	62	32	0	0	67	0.91
11650020--11650073	19	2.9	19	83	8	67	12	1	3	81	0.91
11650029--11650074	23	2.0	24	86	4	67	15	0	6	78	0.95
11650301--11650346	20	2.2	22	88	7	69	76	0	6	17	1.00
11662585--11662791	40	5.3	40	77	11	169	28	14	14	42	1.85
11662656--11662792	40	3.4	40	88	3	186	26	12	17	43	1.84
11662777--11662903	34	3.6	33	72	15	101	31	14	13	40	1.84
11662585--11662927	74	4.5	74	75	10	257	29	14	14	41	1.86
11662656--11662927	40	7.1	39	72	13	172	28	13	15	41	1.85
11663050--11663336	40	7.5	39	72	13	188	27	12	15	44	1.82
11663010--11663194	75	2.5	72	85	4	217	28	12	15	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11663164--11663367	72	2.7	72	84	8	230	27	10	16	45	1.80
11663236--11663375	40	3.5	40	79	5	158	25	12	16	45	1.83
11663050--11663332	112	2.5	112	84	4	338	28	11	15	44	1.81
11663236--11663391	80	2.0	80	83	2	197	26	13	17	42	1.86
11663622--11663651	3	10.0	3	100	0	60	33	0	0	66	0.92
11665046--11665088	10	3.7	11	82	17	52	72	0	2	25	0.97
11665046--11665089	24	2.0	24	86	13	67	72	0	2	25	0.96
11665229--11665292	22	2.8	23	78	7	67	75	3	3	18	1.08
11669962--11669995	3	11.3	3	100	0	68	0	0	64	35	0.94
11674552--11674580	6	5.0	6	91	8	51	0	0	17	82	0.66
11676142--11676166	2	12.5	2	100	0	50	52	0	48	0	1.00
11677785--11677819	16	2.2	16	89	0	52	65	14	2	17	1.38
11698208--11698236	2	14.5	2	100	0	58	51	0	0	48	1.00
11699084--11699126	21	2.0	22	86	4	61	48	9	4	37	1.56
11703607--11703645	19	2.0	20	90	5	62	46	0	0	53	1.00
11703672--11703722	21	2.5	21	93	3	86	49	0	0	50	1.00
11704041--11704080	21	2.0	20	90	9	64	70	0	0	30	0.88
11719104--11719276	86	2.0	86	96	0	319	28	24	12	34	1.92
11719361--11719409	25	2.0	25	95	0	89	22	22	18	36	1.95
11720744--11720772	2	14.5	2	100	0	58	48	0	0	51	1.00
11740038--11740093	6	9.5	6	74	18	55	21	0	0	78	0.75
11740060--11740085	10	2.6	10	100	0	52	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11740621--11740660	20	2.0	20	85	9	55	50	0	50	0	1.00
11742384--11742447	32	2.0	31	87	3	92	32	18	3	45	1.65
11744394--11744423	9	3.2	9	95	4	51	63	0	0	36	0.95
11744396--11744425	10	3.1	10	95	4	53	63	0	0	36	0.95
11752851--11752877	11	2.5	11	100	0	54	48	7	7	37	1.59
11753892--11753954	14	4.3	15	73	15	60	77	0	19	3	0.90
11753883--11753954	12	5.6	12	77	19	58	80	0	16	2	0.83
11753890--11753956	33	2.0	33	85	5	89	76	0	19	4	0.96
11753964--11754304	169	2.0	170	91	2	560	24	14	6	54	1.63
11755118--11755258	7	20.3	7	71	12	85	44	24	2	28	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84