genome.fa.s157.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  23  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4828162--4828202	21	2.0	21	85	4	57	46	9	21	21	1.80
4834599--4834670	36	2.0	36	89	5	110	47	11	13	27	1.77
4837770--4837837	13	4.9	12	77	21	55	73	1	5	19	1.11
4837782--4837839	29	2.0	28	83	9	73	72	0	8	18	1.10
4838778--4838833	24	2.5	22	77	11	67	46	1	3	48	1.30
4838788--4838842	24	2.2	26	87	6	78	45	1	3	49	1.30
4838819--4838878	24	2.5	23	78	8	66	53	5	1	40	1.33
4839808--4840300	263	1.9	260	84	2	655	43	6	9	39	1.64
4841872--4842354	258	1.9	254	81	4	594	43	8	10	38	1.69
4844308--4844371	26	2.4	27	78	19	71	45	4	3	46	1.39
4844362--4844409	24	2.0	24	83	4	60	56	10	4	29	1.52
4853012--4853058	18	2.6	18	75	3	58	46	0	0	53	1.00
4855847--4855890	4	11.5	4	80	9	56	25	2	25	47	1.63
4855852--4855886	18	1.9	18	94	0	61	25	2	22	48	1.64
4855847--4855890	22	2.0	22	90	0	70	25	2	25	47	1.63
4857816--4857840	2	12.5	2	100	0	50	52	0	0	48	1.00
4858011--4858040	15	2.0	15	100	0	60	80	0	13	6	0.91
4859947--4859977	10	3.1	10	100	0	62	48	0	38	12	1.42
4864485--4864512	5	5.6	5	100	0	56	0	35	0	64	0.94
4880071--4880159	44	2.0	44	88	2	133	32	16	16	33	1.92
4890621--4890682	28	2.3	27	80	5	63	54	3	4	37	1.38
4892734--4892772	18	2.1	19	85	4	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4897806--4897839	14	2.3	15	90	10	52	47	5	2	44	1.42
4897837--4897938	18	6.0	17	69	18	70	48	2	3	45	1.36
4897838--4897919	34	2.4	34	86	9	114	46	3	3	46	1.38
4897854--4897934	34	2.4	34	83	6	94	49	3	1	45	1.27
4897815--4897934	34	3.5	34	78	7	93	49	3	3	44	1.35
4898278--4898304	3	9.0	3	100	0	54	66	0	0	33	0.92
4898421--4898453	14	2.4	14	90	10	50	45	0	0	54	0.99
4907901--4907927	2	13.5	2	100	0	54	48	0	0	51	1.00
4932842--4933067	117	1.9	117	83	1	292	38	15	11	33	1.85
4939272--4939351	39	2.0	40	85	7	110	30	18	15	36	1.92
4939797--4939833	2	19.5	2	89	10	60	48	0	0	51	1.00
4940250--4940309	17	3.4	17	74	4	57	20	3	0	76	0.92
4940251--4940309	23	2.5	23	80	2	73	20	3	0	76	0.93
4941542--4941575	15	2.2	15	89	5	50	61	0	0	38	0.96
4948200--4948227	2	14.0	2	100	0	56	0	50	0	50	1.00
4954719--4954759	2	20.5	2	89	0	64	43	0	4	51	1.23
4963823--4963875	23	2.6	19	74	23	54	64	1	1	32	1.15
4973516--4973568	24	2.2	24	86	3	72	33	9	15	41	1.79
4975159--4975193	10	3.7	10	85	14	56	42	0	0	57	0.99
4975159--4975193	9	3.8	9	85	7	52	42	0	0	57	0.99
4977507--4977578	30	2.4	31	78	17	80	58	1	1	38	1.15
4977550--4977579	11	2.7	11	94	0	51	60	3	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4977562--4977622	26	2.3	27	75	16	65	42	1	0	55	1.09
4977572--4977623	26	2.1	26	85	7	72	38	1	0	59	1.08
4977588--4977622	18	1.9	18	88	11	54	37	2	0	60	1.12
4977859--4977923	18	3.7	17	74	12	51	43	1	0	55	1.09
4985775--4985927	77	2.0	77	100	0	306	49	9	11	30	1.70
4986489--4986513	2	12.5	2	100	0	50	52	48	0	0	1.00
4997915--4997946	2	16.0	2	100	0	64	0	50	0	50	1.00
4999815--4999861	16	3.0	16	84	9	53	48	0	0	51	1.00
5011554--5011584	2	15.5	2	93	0	53	51	3	0	45	1.17
5013303--5013331	2	14.5	2	100	0	58	51	0	0	48	1.00
5013331--5013365	2	17.5	2	100	0	70	51	0	48	0	1.00
5014667--5014708	15	2.9	15	79	13	52	71	0	2	26	0.98
5025394--5025431	20	1.9	20	84	10	51	44	0	0	55	0.99
5027323--5027347	13	1.9	13	100	0	50	8	8	20	64	1.46
5033658--5033794	69	2.0	69	92	0	229	43	17	10	29	1.82
5042989--5043018	14	2.1	14	93	0	51	56	0	33	10	1.32
5048116--5048157	20	2.0	21	86	4	59	26	4	9	59	1.48
5049328--5049386	30	2.0	30	100	0	118	50	3	10	35	1.53
5049942--5049993	27	1.9	27	84	0	68	38	0	3	57	1.17
5051708--5051749	14	3.0	15	83	13	54	45	2	0	52	1.13
5057763--5057795	2	16.5	2	100	0	66	51	0	0	48	1.00
5060073--5060127	20	2.8	20	80	0	74	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5060174--5060229	29	1.9	29	82	7	69	32	5	0	62	1.18
5061542--5061588	23	2.0	22	84	15	60	6	40	0	53	1.27
5064365--5064415	21	2.5	21	78	12	61	43	0	0	56	0.99
5064363--5064417	22	2.6	21	78	16	60	43	0	0	56	0.99
5069033--5069071	19	2.2	17	86	9	51	82	0	2	15	0.79
5069359--5069400	17	2.5	17	88	7	59	64	23	9	2	1.35
5071421--5071450	13	2.4	13	94	5	53	13	0	0	86	0.57
5086936--5086986	8	6.5	8	79	4	59	39	0	0	60	0.97
5086946--5086988	15	2.8	16	89	3	61	44	0	0	55	0.99
5088577--5088613	19	1.9	19	88	0	56	51	0	0	48	1.00
5089201--5089248	19	2.6	19	83	3	62	45	4	2	47	1.33
5090510--5090548	2	20.0	2	89	5	62	46	2	51	0	1.14
5097342--5097404	28	2.2	28	91	0	99	33	19	7	39	1.80
5098466--5098492	1	27.0	1	100	0	54	100	0	0	0	0.00
5106456--5106492	18	2.1	18	100	0	74	59	16	24	0	1.37
5118051--5118199	80	1.9	80	94	0	262	29	15	16	38	1.89
5120427--5120669	120	2.0	122	91	3	400	18	14	27	38	1.91
5141279--5141306	2	14.0	2	100	0	56	50	0	0	50	1.00
5143666--5143699	16	2.2	16	89	5	52	11	2	2	82	0.89
5146676--5146738	23	2.7	23	97	2	117	46	7	0	46	1.32
5146690--5146733	14	3.5	14	71	28	53	45	6	0	47	1.29
5160267--5160293	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5164086--5164129	21	2.1	21	100	0	88	31	0	36	31	1.58
5177785--5178049	66	4.0	66	100	0	530	39	12	13	35	1.82
5185821--5185850	3	10.0	3	100	0	60	0	33	0	66	0.92
5187913--5187942	15	1.9	16	93	6	53	53	0	0	46	1.00
5189682--5189733	27	1.9	27	84	7	70	17	3	5	73	1.19
5190528--5190605	25	3.0	25	75	5	75	50	0	0	50	1.00
5196016--5196078	27	2.4	25	84	7	81	61	1	1	34	1.15
5204646--5204676	3	10.3	3	100	0	62	64	0	0	35	0.94
5214191--5214225	17	2.1	17	89	10	54	31	2	0	65	1.07
5214183--5214236	26	2.1	26	82	6	65	31	5	0	62	1.18
5214612--5214653	21	2.0	21	85	4	57	33	11	0	54	1.37
5215243--5215311	22	3.2	22	78	13	72	65	5	4	24	1.33
5215353--5215439	45	1.9	45	95	0	156	39	14	10	35	1.81
5239014--5239064	22	2.3	22	93	0	84	31	19	15	33	1.93
5240577--5240689	3	36.3	3	72	21	51	30	0	5	64	1.15
5240776--5240808	11	2.8	12	86	9	50	18	0	0	81	0.68
5241123--5241195	31	2.4	31	83	4	94	23	24	23	28	1.99
5241257--5241301	19	2.4	19	92	0	72	24	31	22	22	1.99
5241604--5242053	156	2.9	155	90	4	732	29	14	18	37	1.91
5250212--5250300	8	10.6	8	76	15	56	76	0	12	11	1.02
5250213--5250300	16	5.3	18	81	18	95	76	0	12	11	1.03
5250214--5250305	17	5.6	16	76	20	84	73	0	14	11	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5250228--5250294	8	7.6	9	79	17	70	73	0	14	11	1.11
5250212--5250312	34	2.9	35	88	10	138	74	0	13	11	1.08
5251323--5251731	41	10.0	41	91	5	582	23	16	22	37	1.94
5251329--5251731	83	4.9	83	93	3	635	23	16	23	36	1.94
5251738--5251866	1	129.0	1	78	0	114	87	7	0	4	0.66
5251738--5251860	9	13.6	9	84	11	130	87	8	0	4	0.65
5252051--5252161	3	35.3	3	71	21	54	30	0	5	63	1.16
5252597--5252658	31	2.0	32	84	9	83	22	19	24	33	1.97
5252603--5252665	31	2.0	31	82	11	76	23	20	22	33	1.97
5252727--5252769	19	2.3	19	87	0	59	27	30	18	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84