genome.fa.s157.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  15  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2838804--2839709	288	3.1	287	82	4	1081	19	21	13	44	1.86
2839502--2839612	35	2.9	39	72	10	122	21	26	11	40	1.87
2839468--2839580	35	3.1	35	69	12	93	21	23	12	43	1.86
2843487--2843530	15	2.9	15	79	3	52	29	0	2	68	1.02
2843526--2843566	20	2.0	21	85	4	57	46	0	2	51	1.14
2843985--2844036	21	2.6	20	87	6	70	69	0	0	30	0.89
2843966--2844020	12	4.7	12	73	17	53	65	1	0	32	1.03
2843960--2844036	21	3.5	21	77	13	68	67	1	0	31	0.99
2845063--2845096	3	11.3	3	93	0	59	35	2	0	61	1.11
2845330--2845519	38	5.2	37	70	7	145	17	18	17	46	1.85
2845250--2846127	73	12.2	73	83	2	952	19	21	14	44	1.86
2845516--2845623	35	3.1	34	68	7	92	21	21	12	44	1.85
2845289--2846132	215	3.9	215	85	2	1035	19	21	14	44	1.86
2845250--2846127	288	3.0	288	82	2	1073	19	21	14	44	1.86
2845920--2846030	35	2.9	39	68	10	104	22	25	10	41	1.86
2846376--2846421	3	15.3	3	100	0	92	67	0	0	32	0.91
2846384--2846449	15	4.1	16	86	7	73	66	0	0	33	0.92
2846378--2846459	27	3.1	26	81	10	87	68	0	0	31	0.90
2846515--2846562	22	2.2	22	92	0	78	12	52	18	16	1.75
2847965--2848034	34	2.1	32	84	5	86	47	20	2	30	1.64
2847981--2848034	17	3.2	17	72	0	54	50	24	1	24	1.60
2849901--2849944	22	2.0	23	86	13	65	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2849959--2850004	20	2.3	21	85	7	60	43	0	2	54	1.12
2850413--2850452	19	2.2	19	86	4	55	70	0	0	30	0.88
2850401--2850446	12	3.7	12	82	5	56	65	2	0	32	1.05
2850975--2851015	16	2.4	18	80	12	50	2	7	9	80	0.99
2851494--2851519	3	8.7	3	100	0	52	34	0	0	65	0.93
2851665--2851708	14	3.1	14	86	0	52	43	4	6	45	1.51
2853272--2853297	4	6.5	4	100	0	52	50	0	0	50	1.00
2858094--2858173	42	1.9	42	82	10	101	35	3	2	58	1.29
2858592--2858639	14	3.3	14	83	16	62	16	0	31	52	1.45
2858642--2858704	16	4.1	15	78	9	56	15	4	31	47	1.67
2858649--2858765	32	3.7	32	75	4	94	21	2	28	47	1.64
2858649--2858762	15	7.2	15	67	17	52	20	2	28	49	1.62
2860091--2860121	16	1.9	16	100	0	62	35	6	38	19	1.77
2860616--2860812	108	1.8	107	81	2	243	39	17	19	23	1.92
2860804--2860854	24	2.2	24	86	6	70	33	23	19	23	1.97
2860698--2860943	131	1.9	131	84	6	329	37	19	20	22	1.94
2860685--2860961	130	2.1	130	81	7	321	36	18	21	23	1.95
2860425--2861039	239	2.6	239	76	9	590	37	18	21	22	1.94
2861339--2861422	43	2.0	42	83	4	107	35	15	14	34	1.88
2861684--2861730	24	1.9	25	82	4	60	29	12	19	38	1.89
2867287--2867335	22	2.2	23	85	3	64	51	10	2	36	1.48
2867457--2867517	26	2.3	26	100	0	122	14	22	34	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2868437--2868485	23	2.2	22	81	3	53	18	16	51	14	1.77
2868579--2868619	3	13.7	3	94	0	73	34	0	2	63	1.08
2869047--2869112	33	2.0	33	90	0	105	13	6	42	37	1.69
2869409--2869434	11	2.4	11	100	0	52	73	0	0	26	0.84
2870592--2870618	14	1.9	14	100	0	54	22	22	7	48	1.75
2871826--2871859	3	11.3	3	100	0	68	64	0	0	35	0.94
2873799--2873873	14	5.1	15	78	10	66	48	32	1	18	1.57
2873779--2873866	30	2.9	31	80	10	108	46	30	2	20	1.63
2873789--2873873	15	5.7	14	76	12	71	48	31	2	17	1.60
2873868--2873910	14	2.9	15	79	10	52	48	39	0	11	1.40
2873819--2873922	51	2.1	51	83	8	133	50	32	0	16	1.45
2879803--2879850	20	2.4	20	100	0	96	33	37	0	29	1.58
2882032--2882127	41	2.3	41	81	0	111	36	14	13	35	1.86
2882382--2882638	109	2.3	109	80	3	284	22	21	18	37	1.94
2882600--2882667	23	3.0	23	80	6	77	23	23	23	29	1.99
2882631--2882675	22	2.0	22	82	0	54	31	26	20	22	1.98
2882491--2883030	131	4.1	133	83	4	650	22	22	19	36	1.95
2882735--2882804	22	3.1	22	77	4	77	25	21	18	34	1.96
2882865--2882927	21	2.9	22	81	9	76	23	26	22	26	2.00
2884702--2884815	16	7.2	16	75	5	106	48	30	2	18	1.62
2884703--2884855	31	4.7	32	74	13	125	47	32	1	18	1.60
2884702--2884823	47	2.6	46	78	3	127	47	31	2	18	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2884826--2884887	14	4.2	15	80	10	74	51	32	0	16	1.44
2884782--2884889	51	2.1	50	83	11	130	49	33	0	16	1.53
2884826--2884887	30	2.1	29	84	3	79	51	32	0	16	1.44
2888439--2888536	46	2.1	46	100	0	196	48	8	6	36	1.58
2890258--2890287	4	7.5	4	100	0	60	50	0	0	50	1.00
2893347--2893375	2	14.5	2	100	0	58	51	0	0	48	1.00
2894554--2894587	3	11.3	3	100	0	68	64	0	0	35	0.94
2896529--2896671	30	4.7	30	75	11	121	46	30	2	19	1.64
2896529--2896664	15	8.7	15	73	10	94	46	30	2	19	1.65
2896529--2896664	32	4.4	30	76	10	121	46	30	2	19	1.65
2896528--2896671	16	9.4	14	72	15	72	47	30	2	19	1.64
2896622--2896730	51	2.1	50	81	11	132	48	34	0	16	1.46
2896666--2896708	14	2.9	15	79	10	52	48	39	0	11	1.40
2896528--2896728	30	6.4	30	71	14	86	47	31	1	18	1.60
2897137--2897211	24	3.3	23	70	11	64	61	1	2	34	1.18
2903071--2903116	9	4.8	9	84	10	56	84	2	4	8	0.83
2904803--2904898	41	2.3	41	81	0	111	35	14	14	35	1.87
2905377--2905438	23	2.7	23	80	2	72	24	22	24	29	1.99
2905402--2905446	22	2.0	22	82	0	54	31	26	20	22	1.98
2905268--2905798	133	4.1	133	81	6	602	21	21	19	37	1.95
2905633--2905695	21	2.9	22	81	9	76	23	26	22	26	2.00
2906116--2906146	16	1.9	16	100	0	62	19	38	6	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2907474--2907588	16	7.2	16	72	7	90	47	29	3	19	1.65
2907475--2907628	32	4.7	32	72	13	109	46	31	2	18	1.63
2907474--2907596	47	2.6	47	75	5	113	47	30	3	19	1.65
2907479--2907660	16	11.5	14	69	19	76	47	30	2	19	1.62
2907555--2907662	51	2.1	51	81	14	125	48	32	1	17	1.58
2907599--2907660	30	2.1	29	81	3	70	51	30	0	17	1.46
2907607--2907691	44	1.9	44	81	9	102	47	29	1	22	1.59
2911214--2911311	46	2.1	46	100	0	196	48	8	6	36	1.58
2914614--2914644	14	2.2	14	94	0	53	51	9	0	38	1.35
2914619--2914661	14	3.1	14	86	0	50	41	4	6	46	1.51
2914805--2914830	3	8.7	3	100	0	52	65	0	0	34	0.93
2915877--2915922	12	3.7	12	80	8	56	32	0	2	65	1.05
2915871--2915910	18	2.2	19	86	4	55	30	0	0	70	0.88
2916306--2916351	20	2.3	21	85	7	60	54	2	0	43	1.12
2916366--2916409	22	2.0	23	86	13	65	65	0	0	34	0.93
2918739--2918784	17	2.9	16	78	12	51	78	2	0	19	0.86
2920811--2920853	19	2.3	19	79	0	50	23	2	0	74	0.93
2920832--2920882	17	3.1	16	81	10	50	33	0	0	66	0.92
2920860--2920892	3	11.0	3	93	0	57	33	0	3	63	1.10
2921109--2921925	74	11.8	70	83	8	878	43	13	22	19	1.86
2921145--2921925	142	5.6	142	84	8	942	44	13	22	20	1.86
2922985--2923023	10	3.9	10	82	0	51	10	2	2	84	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2934162--2934209	23	2.1	23	88	0	69	18	16	50	14	1.79
2934308--2934340	3	11.0	3	100	0	66	33	0	0	66	0.92
2934606--2934671	33	2.0	33	90	0	105	13	6	42	37	1.69
2935048--2935083	12	3.0	12	83	0	54	52	19	0	27	1.46
2935743--2935770	3	9.3	3	100	0	56	64	0	0	35	0.94
2937668--2937699	17	1.9	17	93	6	57	50	28	3	18	1.62
2937694--2937781	30	2.9	31	80	10	108	46	30	2	20	1.63
2937704--2937845	14	9.1	14	69	19	77	48	33	1	16	1.55
2937734--2937847	51	2.3	50	83	10	135	50	34	0	15	1.45
2937784--2937845	30	2.1	29	81	3	70	51	33	0	14	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84