genome.fa.s157.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  18  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3329474--3329503	12	2.5	12	88	0	51	60	0	0	40	0.97
3329598--3329665	35	1.9	34	82	11	84	54	7	0	38	1.28
3331159--3331215	30	1.9	30	92	0	96	12	17	5	64	1.44
3332020--3332051	16	2.0	16	100	0	64	18	18	0	62	1.33
3334015--3334053	21	1.9	21	84	5	53	25	7	5	61	1.44
3336009--3336038	15	2.0	15	100	0	60	13	20	13	53	1.72
3338797--3338838	21	2.0	21	86	9	59	54	4	2	38	1.34
3340185--3340222	19	2.0	19	94	0	67	23	15	2	57	1.51
3340523--3340579	27	2.1	28	78	12	66	31	5	3	59	1.36
3341800--3341833	17	2.1	17	89	10	54	14	0	0	85	0.60
3341800--3341833	16	2.2	15	89	5	50	14	0	0	85	0.60
3346657--3346720	26	2.5	26	79	7	76	53	1	0	45	1.10
3346657--3346764	25	4.4	25	72	13	91	51	0	0	46	1.13
3346685--3346761	8	10.0	8	74	17	74	51	0	1	46	1.09
3346709--3346783	21	3.4	21	78	10	96	52	0	2	45	1.15
3346717--3346795	17	5.1	16	75	16	76	48	0	3	48	1.19
3346683--3346795	45	2.5	45	95	0	199	49	0	2	47	1.15
3350284--3350512	3	78.7	3	75	12	120	55	5	4	34	1.45
3350462--3350516	19	2.9	19	83	2	76	63	3	0	32	1.12
3351370--3351410	21	2.0	21	90	4	66	19	7	12	60	1.54
3353912--3353952	21	2.0	21	90	0	64	53	4	0	41	1.22
3354152--3354221	34	2.1	34	94	0	122	51	7	7	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3357411--3357718	153	2.0	153	87	3	442	40	7	6	45	1.59
3360340--3360599	22	11.9	22	69	8	120	53	4	8	34	1.50
3361029--3361288	22	11.8	22	74	11	183	51	7	7	32	1.59
3361035--3361288	66	3.8	66	75	10	221	51	7	7	32	1.59
3361350--3361458	22	5.0	22	71	9	89	40	4	11	44	1.60
3361352--3361469	43	2.7	44	80	6	125	41	4	11	43	1.59
3361385--3361489	22	4.9	22	73	9	72	40	3	13	41	1.62
3361490--3361567	22	3.6	21	78	11	68	46	6	5	42	1.51
3361531--3361598	11	6.4	10	75	12	64	48	1	5	44	1.36
3361531--3361598	32	2.1	32	97	0	127	48	1	5	44	1.36
3361563--3361639	22	3.5	22	80	7	86	45	6	6	41	1.56
3361463--3361639	76	2.4	75	78	9	182	45	5	6	41	1.54
3361579--3361681	22	4.8	22	75	11	79	43	10	5	39	1.63
3362348--3362448	22	4.5	22	76	4	96	48	3	6	40	1.49
3362348--3362443	45	2.1	44	90	3	147	47	4	7	40	1.50
3362613--3362740	66	1.9	66	84	6	170	46	9	5	38	1.59
3362596--3362752	22	7.1	22	79	5	129	47	8	5	38	1.56
3362741--3362773	17	1.9	17	93	0	57	51	0	6	42	1.26
3362795--3362845	22	2.3	21	80	12	59	45	7	11	35	1.70
3365857--3365925	35	2.0	35	88	5	104	43	11	30	14	1.81
3371432--3371490	22	2.7	21	79	10	57	55	3	3	37	1.33
3371472--3371516	24	1.9	24	86	4	65	60	2	6	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3375884--3375993	27	4.1	27	100	0	220	49	21	10	18	1.78
3376087--3376227	74	1.9	74	97	0	264	37	14	18	29	1.90
3376329--3376384	27	2.1	27	96	0	103	50	19	10	19	1.77
3378663--3378696	17	2.1	16	88	5	50	38	5	5	50	1.51
3384645--3384669	12	2.1	12	100	0	50	48	8	0	44	1.32
3388187--3388311	63	2.0	63	87	0	178	30	15	13	40	1.85
3388492--3388561	35	2.0	35	88	5	106	44	11	30	14	1.80
3391543--3391580	3	12.7	3	100	0	76	31	0	0	68	0.90
3392359--3392452	26	3.6	26	97	0	179	34	19	19	27	1.96
3394177--3394224	14	3.5	14	77	5	53	83	6	2	8	0.88
3405278--3405889	46	12.8	46	82	7	670	28	13	23	35	1.92
3405278--3405889	48	12.8	47	82	6	687	28	13	23	35	1.92
3405278--3405889	95	6.4	94	81	5	726	28	13	23	35	1.92
3406098--3406137	6	6.7	6	88	0	62	0	20	0	80	0.72
3406095--3406140	12	4.1	11	86	13	67	0	19	0	80	0.71
3410588--3410633	24	2.0	24	86	4	67	36	0	2	60	1.09
3414157--3414194	2	19.0	2	94	0	67	52	0	0	47	1.00
3415311--3415367	28	2.0	28	96	0	105	38	12	19	29	1.88
3415403--3415461	22	2.7	21	79	10	57	55	3	3	37	1.33
3415443--3415487	24	1.9	24	86	4	65	60	2	6	31	1.35
3415996--3416038	19	2.3	19	87	0	59	30	16	30	23	1.96
3427405--3427533	64	2.0	63	86	1	177	30	13	13	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3427711--3427780	35	2.0	35	88	5	106	44	11	30	14	1.80
3428437--3428510	30	2.5	30	75	4	78	40	0	1	58	1.07
3428477--3428528	22	2.5	22	93	6	90	50	0	0	50	1.00
3428796--3428844	18	2.7	18	79	17	57	38	4	4	53	1.39
3433358--3433861	59	8.6	59	83	9	575	41	8	14	35	1.75
3434762--3434969	107	1.9	107	98	0	398	34	12	13	39	1.82
3437587--3437645	12	4.5	13	85	8	59	77	1	18	1	0.93
3437585--3437625	17	2.7	15	88	11	57	80	2	14	2	0.92
3438886--3439036	41	3.7	42	95	3	272	22	15	24	37	1.93
3439009--3439062	26	2.1	26	96	0	99	25	12	22	38	1.90
3438969--3439103	68	2.0	65	91	4	216	24	14	23	37	1.93
3439035--3439367	41	8.1	41	87	5	467	23	17	22	36	1.95
3438928--3439141	108	2.0	106	93	3	367	23	16	22	36	1.94
3439372--3439400	9	3.0	10	90	10	51	89	0	0	10	0.48
3439375--3439400	9	2.9	9	100	0	52	92	0	0	7	0.39
3439384--3439642	123	2.1	124	85	7	346	45	13	13	27	1.80
3439783--3439841	23	2.5	24	78	13	61	20	5	3	71	1.20
3446010--3446066	28	2.0	28	100	0	114	15	14	21	49	1.80
3447259--3447399	74	1.9	72	87	5	203	39	15	17	27	1.89
3457902--3457930	7	4.1	7	100	0	58	55	0	0	44	0.99
3463521--3463881	122	3.0	122	97	0	668	24	15	18	40	1.90
3463888--3463934	16	2.9	17	78	12	62	68	2	0	29	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3463915--3463972	22	2.6	22	81	8	55	62	1	0	36	1.06
3471265--3471314	24	2.1	24	100	0	100	60	20	12	8	1.57
3475804--3475881	35	2.2	35	84	9	95	43	5	0	51	1.24
3481023--3481053	4	7.8	4	100	0	62	51	0	22	25	1.48
3491566--3491609	21	2.1	21	87	8	63	56	2	0	40	1.11
3496141--3496173	10	3.3	10	91	8	50	45	0	0	54	0.99
3498646--3498692	2	24.0	2	84	4	60	44	4	0	51	1.21
3499556--3499586	2	15.5	2	100	0	62	51	0	0	48	1.00
3499586--3499623	2	19.0	2	100	0	76	50	0	50	0	1.00
3505487--3505516	3	10.0	3	92	0	51	70	0	30	0	0.88
3513267--3513345	29	2.6	30	86	9	99	46	1	1	50	1.17
3513383--3513424	18	2.3	19	88	8	61	54	0	0	45	0.99
3514708--3514740	2	16.5	2	100	0	66	0	48	0	51	1.00
3515533--3515572	18	2.1	20	86	9	57	27	12	2	57	1.48
3515533--3515571	19	2.1	18	85	4	51	28	12	2	56	1.50
3527671--3527697	2	13.5	2	100	0	54	0	48	0	51	1.00
3537703--3537972	64	4.2	64	96	0	477	22	7	22	46	1.77
3537811--3537913	34	3.1	34	61	16	81	23	7	23	45	1.78
3537824--3537929	34	3.2	34	61	15	87	17	7	25	49	1.73
3538050--3538117	33	2.1	33	97	0	127	36	0	20	42	1.52
3547494--3547572	36	2.2	35	80	8	88	34	2	5	58	1.34
3547910--3547943	14	2.3	15	90	5	52	58	0	2	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3547924--3547964	20	2.1	19	90	4	64	65	0	2	31	1.05
3552360--3552425	25	2.7	24	88	6	105	37	0	4	57	1.19
3552360--3552439	25	3.3	24	84	6	81	40	1	5	53	1.31
3560905--3561009	30	3.5	30	81	5	115	59	1	2	36	1.23
3566237--3566313	29	2.6	29	80	14	86	48	3	7	40	1.51
3568005--3568080	29	2.6	29	78	19	77	55	3	7	32	1.47
3581024--3581048	2	12.5	2	100	0	50	52	0	0	48	1.00
3590270--3590357	45	2.0	45	86	4	124	34	15	11	38	1.84
3628287--3628337	2	25.5	2	100	0	102	0	49	0	50	1.00
3632237--3632279	17	2.6	16	85	7	50	11	13	2	72	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84