genome.fa.s157.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  27  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5991186--5991222	2	18.5	2	100	0	74	48	0	0	51	1.00
5992356--5993183	413	2.0	413	99	0	1631	35	9	21	33	1.86
6010097--6010128	6	5.3	6	92	0	55	46	15	37	0	1.46
6016505--6016551	15	3.1	15	73	11	51	51	2	0	46	1.13
6017675--6017700	2	13.0	2	100	0	52	50	0	0	50	1.00
6043169--6043260	47	1.9	48	88	2	141	44	17	3	34	1.65
6077983--6078066	42	2.0	42	93	2	143	40	20	1	38	1.60
6080045--6080104	30	2.0	29	84	9	77	20	3	8	68	1.30
6084333--6084496	60	2.8	60	81	6	165	39	3	14	43	1.60
6095790--6095821	2	16.0	2	100	0	64	50	0	0	50	1.00
6099097--6099122	13	2.0	13	100	0	52	46	7	7	38	1.61
6099543--6099580	18	2.1	18	90	0	58	52	0	0	47	1.00
6100391--6100415	6	4.2	6	100	0	50	64	0	0	36	0.94
6103103--6103132	14	2.1	14	93	0	51	63	0	3	33	1.11
6103265--6103292	2	14.0	2	100	0	56	0	50	0	50	1.00
6106364--6106388	11	2.3	11	100	0	50	28	0	0	72	0.86
6106455--6106539	37	2.4	36	84	4	109	21	8	4	65	1.38
6106752--6106862	29	3.7	29	78	9	100	53	2	8	36	1.45
6108077--6108105	13	2.2	13	100	0	58	41	34	0	24	1.55
6111342--6111370	1	29.0	1	100	0	58	0	0	0	100	0.00
6112004--6112044	17	2.4	17	87	4	55	75	2	2	19	1.03
6112088--6112122	14	2.4	15	90	4	54	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6118373--6118639	132	2.0	133	95	2	484	46	4	3	44	1.42
6119351--6119434	32	2.6	32	84	3	107	38	0	22	39	1.54
6119562--6119611	23	2.1	24	82	17	61	48	0	2	50	1.12
6119602--6119639	20	1.9	20	88	0	58	57	0	2	39	1.12
6122339--6122464	54	2.3	54	89	8	202	23	26	27	22	1.99
6123433--6123476	22	2.0	23	86	13	65	47	2	6	43	1.42
6124008--6124084	31	2.6	29	74	10	75	61	0	3	35	1.15
6124287--6124344	29	2.0	29	93	0	98	36	5	12	46	1.63
6126413--6126454	21	2.0	21	90	0	66	28	14	38	19	1.90
6133578--6133611	13	2.8	12	91	8	52	29	0	0	70	0.87
6134252--6134284	2	16.0	2	93	6	57	48	0	3	48	1.17
6134253--6134281	15	1.9	15	100	0	58	48	0	3	48	1.18
6142647--6142695	18	2.8	17	74	17	55	48	4	2	44	1.33
6142729--6142770	18	2.3	18	91	4	66	35	0	0	64	0.94
6142789--6142830	20	2.0	22	86	9	61	47	4	0	47	1.23
6142828--6142868	20	2.0	20	86	9	57	73	0	0	26	0.84
6144592--6144628	2	18.5	2	94	0	65	51	2	0	45	1.15
6149192--6149261	25	2.8	25	78	8	72	60	0	5	34	1.21
6150612--6150676	19	3.2	19	74	20	51	55	4	1	38	1.30
6150636--6150676	18	2.2	19	86	4	57	58	0	0	41	0.98
6150674--6150712	19	2.1	18	85	4	51	46	0	2	51	1.14
6150760--6150797	18	2.2	18	85	4	51	55	2	2	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6151156--6151250	29	3.2	28	75	12	84	42	4	2	51	1.33
6157120--6157190	34	2.1	33	84	2	88	42	0	7	50	1.29
6157249--6157282	16	2.1	17	88	5	52	8	0	14	76	1.01
6160323--6160370	18	2.8	17	78	21	55	31	0	2	66	1.03
6160324--6160370	17	2.8	17	81	18	53	31	0	2	65	1.04
6160420--6160467	7	6.7	7	83	11	62	58	2	0	39	1.10
6165517--6165547	14	2.2	14	94	0	53	3	80	0	16	0.83
6165535--6165572	16	2.4	17	82	13	53	5	57	0	36	1.21
6168907--6168986	27	2.9	28	84	3	117	35	20	8	36	1.83
6170722--6170761	16	2.5	16	87	0	53	37	22	5	35	1.76
6172436--6172469	13	2.7	13	90	4	52	64	2	0	32	1.08
6172528--6172559	14	2.4	14	94	5	57	31	0	6	62	1.20
6190217--6190252	12	3.0	12	91	0	63	25	13	8	52	1.68
6190980--6191074	21	4.5	21	91	0	136	33	20	14	31	1.93
6199902--6199953	21	2.5	21	84	6	61	36	21	11	30	1.89
6201424--6201490	21	3.2	21	77	8	73	40	14	8	35	1.78
6201434--6201518	21	4.0	21	82	0	80	35	18	12	32	1.89
6209885--6209927	15	2.9	15	79	6	52	37	0	9	53	1.33
6210002--6210030	12	2.4	12	100	0	58	44	0	0	55	0.99
6212820--6212944	52	2.4	52	89	0	178	28	26	8	36	1.85
6212820--6212976	52	3.0	52	82	9	160	26	25	8	40	1.83
6213276--6213388	50	2.3	50	84	3	138	18	30	9	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6213258--6213388	25	5.2	25	75	9	97	19	32	9	39	1.83
6213383--6213466	31	2.7	31	83	0	105	29	21	17	30	1.96
6213951--6214107	52	3.0	52	81	9	185	25	25	8	40	1.83
6229697--6229731	3	11.7	3	100	0	70	68	0	0	31	0.90
6230568--6230623	21	2.6	22	83	13	64	60	1	1	35	1.17
6230652--6230702	26	2.0	25	82	17	61	47	5	1	45	1.38
6230759--6230820	24	2.7	23	69	16	56	41	3	0	54	1.16
6230752--6230802	19	2.7	18	72	19	50	37	3	0	58	1.16
6231418--6231452	16	2.2	16	94	0	61	40	0	0	60	0.97
6231947--6231997	27	1.9	26	84	11	68	41	1	0	56	1.10
6234290--6234322	12	2.8	12	95	0	57	33	24	0	42	1.55
6245478--6245516	16	2.4	16	82	0	51	23	2	28	46	1.65
6250436--6250471	18	2.0	18	88	0	54	75	0	2	22	0.94
6250806--6250845	6	6.5	6	97	2	71	30	52	2	15	1.55
6269385--6269411	2	13.5	2	100	0	54	51	0	0	48	1.00
6271275--6271328	17	3.1	17	82	10	65	62	1	29	5	1.28
6273061--6273104	19	2.3	19	92	0	70	22	15	4	56	1.57
6273069--6273106	19	2.0	19	100	0	76	15	21	5	57	1.57
6274369--6274396	10	2.8	10	100	0	56	21	35	21	21	1.96
6275184--6275232	24	2.0	24	84	7	64	40	2	0	57	1.10
6275927--6275967	10	4.1	10	87	0	64	31	0	48	19	1.49
6276225--6276436	64	3.3	63	68	10	151	40	11	11	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6299749--6299778	3	10.0	3	100	0	60	66	0	33	0	0.92
6305624--6305739	58	2.0	58	94	0	205	20	17	14	47	1.82
6305635--6305730	32	3.2	32	61	17	78	21	18	14	44	1.86
6309309--6309341	2	17.0	2	93	6	59	51	0	0	48	1.00
6323059--6323195	63	2.2	62	89	1	202	35	11	16	36	1.85
6323781--6323811	16	1.9	16	100	0	62	38	22	12	25	1.90
6325037--6325061	8	3.1	8	100	0	50	64	0	36	0	0.94
6325963--6326129	83	2.0	83	96	0	307	50	14	13	20	1.76
6328328--6328361	15	2.3	15	85	5	52	0	2	8	88	0.62
6332010--6332044	1	35.0	1	100	0	70	0	0	0	100	0.00
6335581--6335612	2	16.0	2	100	0	64	0	50	0	50	1.00
6351682--6352649	482	2.0	482	99	0	1918	32	14	16	36	1.89
6354483--6354515	10	3.0	11	86	13	50	24	3	18	54	1.57
6362876--6362916	18	2.3	19	87	8	59	7	21	2	68	1.26
6367593--6367640	24	2.0	25	87	4	71	52	0	0	47	1.00
6369349--6369407	30	2.0	30	89	0	91	42	6	3	47	1.46
6370209--6370246	18	2.1	19	90	5	60	47	0	0	52	1.00
6370997--6371093	31	2.9	32	75	18	92	52	0	1	46	1.07
6371032--6371082	12	4.1	12	80	7	57	58	0	0	41	0.98
6371277--6371321	21	2.1	21	84	8	56	46	2	4	46	1.35
6372724--6372767	19	2.3	19	80	7	54	52	2	0	45	1.13
6373436--6373481	21	2.2	21	92	7	76	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6374242--6374279	20	1.9	20	84	10	51	47	0	5	47	1.24
6383031--6383060	15	1.9	16	93	6	53	36	3	0	60	1.14
6388923--6388967	6	7.5	6	92	0	63	8	51	2	37	1.46
6388923--6388967	18	2.5	18	88	0	72	8	51	2	37	1.46
6389646--6389799	77	2.0	77	96	0	281	55	13	18	12	1.68
6394026--6394070	6	7.5	6	100	0	90	0	51	0	48	1.00
6395569--6395645	34	2.3	33	80	10	86	50	1	3	44	1.28
6398581--6398622	11	3.8	11	80	0	57	21	0	26	52	1.47
6398580--6398636	22	2.6	22	83	2	71	24	1	24	49	1.60
6398648--6398799	51	3.0	51	82	8	184	44	7	19	27	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84