genome.fa.s157.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  29  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6566841--6566893	27	2.0	27	92	0	88	33	15	5	45	1.69
6568360--6568395	2	18.0	2	100	0	72	0	50	0	50	1.00
6569433--6569460	2	14.0	2	100	0	56	0	50	0	50	1.00
6569460--6569486	2	13.5	2	100	0	54	48	0	0	51	1.00
6569736--6569764	2	14.5	2	100	0	58	0	0	48	51	1.00
6572346--6572372	2	13.5	2	100	0	54	51	0	0	48	1.00
6584906--6584958	26	2.0	26	100	0	106	52	13	7	26	1.66
6597996--6598056	32	1.9	32	86	6	88	24	29	4	40	1.76
6602368--6602416	24	2.0	24	92	0	80	16	16	8	59	1.60
6606227--6606251	4	6.2	4	100	0	50	76	0	0	24	0.80
6607666--6607690	2	12.5	2	100	0	50	48	0	0	52	1.00
6615223--6615416	97	2.0	97	100	0	388	32	9	21	36	1.85
6615416--6615453	2	19.0	2	100	0	76	50	0	50	0	1.00
6632497--6632612	60	1.9	61	82	1	144	27	14	10	47	1.77
6639152--6639214	23	2.7	23	71	22	60	50	1	3	44	1.27
6639143--6639208	24	2.6	25	79	13	73	54	1	4	39	1.30
6647201--6647256	21	2.7	21	91	8	89	48	0	0	51	1.00
6647560--6647615	29	1.9	29	92	0	94	50	0	0	50	1.00
6647548--6647624	20	3.8	20	71	17	70	51	0	0	48	1.00
6647725--6647778	27	2.0	27	92	0	90	50	1	0	48	1.11
6649820--6649850	4	7.8	4	100	0	62	51	0	25	22	1.48
6652412--6652496	42	2.0	42	88	0	125	38	5	18	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6653216--6653246	2	15.5	2	100	0	62	48	0	0	51	1.00
6654818--6654850	2	16.5	2	93	0	57	45	3	0	51	1.16
6662296--6662350	24	2.3	25	87	6	78	43	0	3	52	1.18
6680780--6680826	24	2.0	24	87	8	69	51	10	0	38	1.37
6689139--6689163	2	12.5	2	100	0	50	48	0	0	52	1.00
6691134--6691164	15	2.1	15	100	0	62	19	0	25	54	1.44
6699071--6699121	14	3.5	15	81	7	61	64	1	0	33	1.05
6703667--6703697	16	1.9	16	100	0	62	58	9	25	6	1.54
6723128--6723167	21	1.9	21	84	0	53	35	10	5	50	1.58
6723122--6723183	21	3.0	20	76	6	52	35	9	3	51	1.51
6724603--6724653	12	4.0	13	78	19	54	39	0	0	60	0.97
6733877--6733928	22	2.5	22	90	6	81	51	0	0	48	1.00
6733895--6733964	30	2.3	30	77	2	77	58	1	0	40	1.07
6753385--6753425	19	2.2	19	95	0	73	0	2	7	90	0.54
6753399--6753433	18	1.9	18	88	0	52	0	5	5	88	0.63
6754159--6754546	195	2.0	196	93	4	667	36	14	12	36	1.84
6754666--6755056	204	1.9	206	82	6	492	31	14	7	45	1.74
6756078--6756128	12	4.3	12	73	11	52	5	13	58	21	1.56
6756350--6756780	47	9.0	49	87	5	603	34	26	11	26	1.91
6756344--6756780	49	9.1	48	87	3	594	34	26	11	27	1.91
6756349--6756779	145	3.0	142	88	3	675	34	26	11	26	1.91
6768312--6768693	193	2.0	192	94	3	669	35	15	12	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6768808--6769190	207	1.8	205	83	7	506	32	14	7	44	1.74
6769405--6769434	11	2.9	10	90	9	51	0	20	40	40	1.52
6769405--6769434	5	5.8	5	92	7	51	0	20	40	40	1.52
6770250--6770300	12	4.3	12	73	11	52	5	13	58	21	1.56
6770343--6770382	13	3.1	13	88	0	53	2	2	15	80	0.93
6770337--6770385	22	2.2	22	89	7	73	6	4	12	77	1.09
6770601--6770649	25	2.0	25	92	4	82	46	14	2	36	1.56
6771462--6771516	26	2.1	26	83	6	67	38	14	3	43	1.63
6772374--6772413	18	2.2	19	86	4	55	55	2	0	42	1.13
6772825--6772905	37	2.2	37	90	0	126	35	4	9	49	1.58
6775264--6775340	34	2.3	34	88	4	111	44	2	6	46	1.43
6786926--6786951	13	2.0	13	100	0	52	61	0	0	38	0.96
6803071--6803136	29	2.3	29	91	0	105	25	10	19	43	1.83
6804082--6804168	43	2.0	43	88	0	129	22	26	14	35	1.94
6812707--6812756	2	25.5	2	91	4	84	52	2	46	0	1.12
6818340--6818392	20	2.5	21	77	20	56	47	0	0	52	1.00
6821379--6821454	34	2.3	33	80	8	84	61	2	5	30	1.31
6822715--6822771	26	2.2	25	84	3	69	45	19	1	33	1.61
6822723--6822771	26	1.9	26	87	4	73	40	20	2	36	1.64
6824568--6824611	2	22.5	2	95	4	81	47	0	0	52	1.00
6826854--6826887	16	2.1	17	88	5	52	41	0	0	58	0.98
6829561--6829606	19	2.3	20	85	3	58	32	0	4	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6829544--6829615	37	1.9	38	83	8	94	33	1	2	62	1.18
6829558--6829616	20	3.2	19	73	19	54	30	0	3	66	1.08
6836259--6836324	25	2.7	25	81	9	66	68	7	1	22	1.24
6838846--6838910	34	1.9	34	100	0	130	30	4	18	46	1.69
6838924--6838949	10	2.6	10	100	0	52	46	0	0	53	1.00
6839856--6840627	414	1.9	414	85	3	1088	40	9	8	40	1.70
6841831--6841936	52	2.0	53	92	1	178	46	12	13	28	1.79
6842950--6842986	18	2.2	18	85	9	51	48	0	0	51	1.00
6842948--6843000	16	2.8	19	73	21	58	50	0	0	49	1.00
6843847--6843915	30	2.3	30	80	10	77	50	1	13	34	1.50
6843890--6843946	30	1.9	30	82	13	73	50	0	12	36	1.40
6851904--6851945	22	1.9	22	90	0	66	28	14	33	23	1.94
6857479--6857531	27	1.9	28	84	3	72	45	9	1	43	1.47
6858190--6858219	10	3.1	10	95	4	53	63	0	0	36	0.95
6858186--6858231	19	2.4	19	76	20	51	56	2	4	36	1.31
6860652--6860690	2	19.5	2	94	0	69	46	0	53	0	1.00
6861403--6861447	22	2.1	21	88	12	65	42	4	0	53	1.21
6864106--6864139	2	17.0	2	87	0	50	44	0	5	50	1.26
6864106--6864139	12	2.8	12	95	0	59	44	0	5	50	1.26
6864742--6864898	52	3.0	52	82	7	210	28	17	7	46	1.74
6864925--6864964	11	3.6	11	86	0	53	45	30	0	25	1.54
6876256--6876295	3	13.3	3	100	0	80	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6879708--6879738	2	15.5	2	100	0	62	51	0	0	48	1.00
6881475--6881508	6	5.7	6	85	0	50	47	2	38	11	1.55
6884369--6884427	29	2.0	29	81	12	68	38	5	15	40	1.69
6884841--6884876	18	1.9	19	88	5	56	30	16	16	36	1.91
6886870--6886944	16	4.8	15	75	8	62	73	4	4	18	1.15
6887049--6887098	18	2.9	17	80	16	66	74	2	4	20	1.08
6887297--6887340	22	2.0	22	82	8	54	47	25	4	22	1.70
6887310--6887389	14	5.5	14	71	8	61	50	26	2	21	1.61
6887252--6887417	58	2.9	58	81	6	167	50	25	3	20	1.62
6887412--6887450	17	2.3	17	86	8	53	41	30	5	23	1.76
6887508--6887549	9	4.8	9	91	2	59	45	30	0	23	1.53
6887602--6887649	24	2.0	24	87	4	69	47	29	0	22	1.51
6890143--6890170	2	14.0	2	100	0	56	50	0	0	50	1.00
6890802--6890826	11	2.3	11	100	0	50	76	0	0	24	0.80
6890866--6890957	45	2.0	45	93	0	157	41	10	16	31	1.83
6893795--6893955	81	2.0	81	98	0	313	22	19	12	45	1.84
6894851--6894888	18	2.1	18	100	0	76	31	7	10	50	1.66
6896085--6896127	2	21.5	2	85	0	59	55	0	0	44	0.99
6898802--6898907	53	2.0	53	98	0	203	34	15	16	33	1.89
6913404--6913480	32	2.4	32	89	2	111	45	11	9	33	1.72
6914348--6914396	24	2.0	24	84	7	64	38	0	6	55	1.25
6914494--6914556	12	5.1	12	70	25	51	52	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6914500--6914537	16	2.4	17	83	16	55	55	0	0	44	0.99
6915051--6915116	20	3.4	20	73	12	57	40	0	1	57	1.08
6915822--6915856	17	2.0	18	88	5	54	34	0	0	65	0.93
6915982--6916017	18	1.9	19	94	5	65	44	2	0	52	1.15
6917136--6917197	26	2.3	26	83	8	72	46	4	0	48	1.23
6921566--6921611	24	1.9	24	86	8	67	28	2	2	67	1.14
6925865--6925901	19	1.9	19	94	0	65	54	0	0	45	1.00
6925868--6925940	32	2.2	33	87	2	103	54	0	0	45	0.99
6925863--6925945	26	3.2	26	74	17	75	51	0	0	48	1.00
6926030--6926083	26	2.0	27	92	3	92	37	1	7	53	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84