genome.fa.s157.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  59  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13257653--13257690	19	2.0	19	89	0	58	42	10	0	47	1.38
13258028--13258066	19	2.1	19	85	9	53	28	10	12	48	1.74
13259339--13259547	104	2.0	104	99	0	409	45	11	6	36	1.65
13260488--13260520	3	11.0	3	93	0	57	30	0	3	66	1.06
13260490--13260539	15	3.1	16	85	8	57	28	0	2	70	0.99
13260493--13260545	15	3.5	15	80	14	56	26	0	3	69	1.05
13261985--13262450	144	3.2	144	77	7	380	40	12	15	32	1.83
13262099--13262450	144	2.5	143	81	6	385	41	12	14	31	1.83
13263336--13263615	70	4.0	70	74	8	230	47	9	19	23	1.79
13263339--13263763	35	12.2	35	71	12	169	47	9	19	23	1.79
13263279--13263615	105	3.2	104	72	9	290	46	9	20	23	1.80
13263491--13263754	139	1.9	139	81	12	319	47	9	18	23	1.78
13263689--13264101	70	5.9	68	74	9	248	44	9	22	23	1.82
13263735--13264100	35	10.6	35	74	12	167	43	9	22	23	1.82
13263376--13264101	105	7.0	105	70	13	254	45	10	20	23	1.82
13263947--13264135	105	1.8	105	80	6	231	45	7	22	24	1.79
13264090--13264181	36	2.6	36	84	1	114	47	8	17	26	1.76
13264081--13264181	35	2.9	34	80	4	112	46	8	19	24	1.79
13266228--13266268	12	3.3	12	83	6	55	0	12	7	80	0.90
13266963--13266996	3	11.3	3	93	0	59	29	0	2	67	1.05
13271775--13271819	3	15.0	3	100	0	90	33	0	0	66	0.92
13271775--13271846	15	4.9	14	89	6	54	29	0	1	69	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13273264--13273604	143	2.4	146	79	6	358	45	13	11	30	1.78
13276397--13276705	152	2.0	152	92	0	519	39	11	21	27	1.88
13285899--13286109	65	3.2	65	79	5	196	21	19	12	46	1.82
13285927--13286150	65	3.4	65	78	8	215	20	18	12	47	1.81
13285925--13286207	130	2.2	130	79	5	295	21	18	13	46	1.82
13285992--13286168	65	2.7	65	80	6	198	21	18	12	48	1.80
13286591--13286619	15	2.0	15	93	6	51	27	6	24	41	1.80
13288214--13288262	25	2.0	25	88	7	75	36	0	0	63	0.95
13289719--13289767	3	16.3	3	95	0	89	65	0	34	0	0.93
13299018--13299103	42	2.1	43	86	6	124	51	15	9	24	1.72
13299095--13299189	43	2.2	43	88	0	136	44	8	12	34	1.73
13299113--13299228	43	2.7	43	80	6	121	46	13	9	30	1.75
13300009--13300121	55	2.1	55	100	0	226	27	23	12	37	1.90
13309592--13309618	13	2.1	13	100	0	54	0	14	0	85	0.61
13310014--13310085	25	3.0	25	74	9	71	59	11	0	29	1.31
13310421--13310467	24	2.0	24	86	0	67	27	14	10	46	1.78
13316571--13316605	2	18.0	2	88	5	54	51	2	0	45	1.16
13316564--13316605	21	2.0	21	85	0	57	50	4	2	42	1.36
13316579--13316604	13	2.0	13	100	0	52	53	0	0	46	1.00
13317175--13317226	23	2.3	22	83	12	61	48	3	0	48	1.20
13317551--13317673	40	3.1	40	80	2	122	38	12	4	44	1.63
13318607--13318671	26	2.6	26	82	4	80	49	0	4	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13318640--13318734	16	5.6	16	70	17	59	50	1	2	46	1.20
13319032--13319088	29	2.0	29	85	0	78	45	0	3	50	1.18
13319072--13319122	24	2.1	25	82	17	63	47	1	5	45	1.38
13319524--13319552	14	2.1	14	100	0	58	58	6	0	34	1.25
13325771--13325805	18	1.9	18	88	0	52	51	11	31	5	1.61
13333834--13334756	306	3.0	298	76	7	779	36	11	14	37	1.83
13337422--13337476	25	2.2	25	86	0	74	38	30	9	21	1.85
13337483--13337557	28	2.6	28	87	4	96	49	22	5	22	1.70
13337792--13337947	77	2.0	77	93	0	267	30	10	17	40	1.84
13338350--13338928	187	3.1	185	84	4	714	41	10	10	36	1.75
13338436--13338990	187	3.0	183	81	6	596	42	10	10	36	1.75
13341489--13341610	6	19.8	6	79	5	100	1	24	50	23	1.59
13341479--13341560	27	3.1	27	84	5	89	3	23	48	24	1.67
13341634--13341774	30	4.7	30	84	0	185	5	21	23	49	1.70
13341634--13341774	60	2.4	60	93	1	248	5	21	23	49	1.70
13354660--13354705	21	2.1	23	84	8	60	4	15	4	76	1.11
13372896--13373052	52	3.0	51	85	3	206	25	26	8	38	1.85
13373073--13373097	11	2.3	11	100	0	50	40	28	0	32	1.57
13373807--13373928	63	1.9	63	93	0	208	30	9	18	41	1.82
13374595--13374628	16	2.1	16	94	0	59	44	0	0	55	0.99
13376278--13376307	2	15.0	2	100	0	60	50	0	0	50	1.00
13381212--13381250	20	2.0	20	89	0	60	35	20	0	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13382237--13382275	15	2.6	15	91	0	60	58	0	38	2	1.12
13382244--13382302	12	4.9	12	82	13	61	61	0	38	0	0.96
13382246--13382305	15	3.8	15	76	20	59	61	0	38	0	0.96
13385695--13385742	24	2.0	24	88	4	71	35	14	4	45	1.64
13390486--13390542	27	2.1	27	90	0	87	29	8	5	56	1.52
13391073--13391111	13	2.9	14	82	17	55	20	2	2	74	1.06
13391360--13391389	14	2.1	14	100	0	60	66	6	0	26	1.16
13391355--13391390	14	2.7	13	87	8	54	63	5	2	27	1.30
13393845--13393878	14	2.6	13	86	13	52	32	14	11	41	1.82
13394548--13394784	104	2.3	105	85	2	300	34	12	13	39	1.83
13394793--13394841	22	2.2	22	85	0	62	30	18	18	32	1.95
13395789--13395941	80	1.9	80	86	0	216	32	13	17	36	1.89
13402081--13402176	38	2.5	38	86	6	115	30	8	15	45	1.75
13420310--13420358	23	2.2	22	85	3	62	48	0	2	48	1.12
13428301--13428325	13	1.9	13	100	0	50	56	4	0	40	1.18
13428485--13428539	28	2.0	28	82	7	67	38	9	5	47	1.58
13428781--13428836	15	3.7	15	73	4	58	39	0	1	58	1.08
13428815--13428918	37	2.8	38	72	13	94	48	0	0	50	1.14
13428842--13428946	42	2.5	42	80	10	124	49	1	1	46	1.23
13429142--13429180	20	2.0	20	85	10	53	56	2	2	38	1.27
13429148--13429211	28	2.2	28	73	10	67	53	1	4	40	1.31
13429229--13429302	18	4.0	20	67	20	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13429297--13429362	26	2.6	25	81	13	80	51	1	1	45	1.19
13429304--13429362	26	2.3	25	86	11	84	50	1	0	47	1.11
13430489--13430523	17	2.1	17	94	0	61	37	2	5	54	1.39
13430945--13430978	15	2.2	16	89	5	52	61	0	0	38	0.96
13432642--13433967	660	2.0	648	84	8	1705	45	6	7	40	1.58
13435381--13435417	2	18.5	2	88	0	56	45	0	5	48	1.25
13443547--13443632	23	3.6	22	77	14	75	39	2	0	58	1.11
13443545--13443632	26	3.6	25	76	17	87	39	2	0	57	1.11
13443584--13443663	25	3.2	24	81	12	72	43	1	0	55	1.08
13443622--13443679	24	2.4	25	88	8	84	56	0	0	43	0.99
13445269--13445374	50	2.1	50	100	0	212	30	6	24	38	1.81
13447798--13447882	21	4.1	21	72	18	63	49	14	5	30	1.66
13448049--13448094	19	2.4	19	89	7	67	82	6	0	10	0.83
13448061--13448118	19	3.1	19	82	9	75	77	3	1	17	0.99
13448050--13448131	24	3.6	22	76	20	80	80	3	1	14	0.91
13448038--13448131	7	12.7	7	75	16	66	80	3	3	12	0.94
13449360--13449610	43	5.8	43	74	11	192	37	15	12	35	1.85
13449372--13449610	86	2.8	86	78	7	243	37	15	11	35	1.84
13462320--13462360	1	41.0	1	100	0	82	0	0	0	100	0.00
13468167--13468229	25	2.6	23	80	11	72	41	4	12	41	1.64
13468184--13468236	25	2.1	25	96	0	97	47	5	7	39	1.56
13468185--13468253	25	2.8	24	84	6	86	40	5	10	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13468226--13468366	45	3.1	47	79	7	141	31	5	15	46	1.69
13468304--13468366	24	2.8	22	74	9	63	36	6	14	42	1.71
13468694--13468742	17	2.8	17	78	3	53	32	8	14	44	1.74
13468902--13468984	17	4.8	17	74	14	62	37	16	12	33	1.86
13470024--13470053	13	2.2	14	94	5	53	20	0	23	56	1.42
13470696--13470744	21	2.3	21	85	0	62	36	2	8	53	1.43
13470740--13470811	20	3.7	20	73	17	62	29	5	11	54	1.58
13470719--13470800	17	4.4	18	74	11	60	31	4	9	53	1.55
13470870--13470895	13	2.0	13	100	0	52	53	0	7	38	1.30
13471068--13471105	17	2.2	18	85	4	51	47	7	5	39	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84