genome.fa.s157.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  7  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031225--1031310	29	2.9	29	80	11	95	76	1	6	15	1.05
1031226--1031318	18	5.2	17	71	19	64	76	1	7	15	1.06
1031227--1031397	20	7.9	20	68	25	68	73	2	4	18	1.13
1031371--1031399	11	2.6	11	100	0	58	86	0	0	13	0.58
1032312--1032341	9	3.2	9	90	9	51	86	0	13	0	0.57
1032383--1032498	6	19.7	6	80	13	109	76	0	2	19	0.95
1032383--1032498	47	2.5	46	82	10	137	76	0	2	19	0.95
1032383--1032498	23	5.2	22	78	17	107	76	0	2	19	0.95
1032832--1032871	15	2.7	15	80	0	53	52	22	5	20	1.65
1032811--1032864	22	2.5	22	76	11	56	50	27	3	18	1.64
1033118--1033150	17	1.9	17	93	0	57	60	0	18	21	1.36
1034910--1034949	21	1.9	20	90	10	62	85	2	12	0	0.71
1034898--1034951	12	5.1	10	80	17	56	79	1	16	1	0.91
1036327--1036380	4	13.5	4	86	7	74	25	24	1	48	1.61
1038034--1038077	9	4.8	10	81	18	60	77	0	4	18	0.94
1038035--1038105	27	2.6	27	75	8	63	81	0	8	9	0.87
1038034--1038087	18	3.0	18	94	5	92	77	0	7	14	0.97
1038044--1038106	10	6.8	9	77	12	56	82	0	9	7	0.84
1038788--1038837	22	2.2	24	86	10	70	78	6	14	2	1.03
1040312--1040721	33	12.5	33	70	12	125	31	20	14	34	1.92
1040214--1040383	86	2.0	86	89	2	261	29	21	14	34	1.93
1040345--1040531	100	1.9	99	82	5	234	29	20	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040478--1040660	95	1.9	95	82	4	226	30	21	13	35	1.91
1040311--1040656	66	5.3	66	68	13	169	30	20	14	34	1.92
1041441--1041609	87	1.9	87	91	0	275	20	19	18	40	1.91
1041546--1041676	36	3.6	36	69	4	109	19	20	16	43	1.88
1041459--1041773	161	2.0	161	86	3	447	20	19	17	42	1.89
1041678--1041916	131	1.8	131	90	3	383	21	18	19	40	1.91
1041980--1042057	7	11.3	7	85	9	99	23	2	1	73	1.03
1042089--1042210	14	8.0	14	72	17	75	30	3	2	63	1.23
1042109--1042241	11	12.6	10	72	19	76	30	4	1	63	1.23
1042120--1042212	43	2.1	44	84	9	118	32	2	2	63	1.18
1042108--1042240	43	3.2	40	77	16	116	30	4	1	63	1.23
1042848--1042893	14	3.1	15	75	15	51	58	0	41	0	0.98
1043154--1043232	3	27.7	3	70	14	51	25	1	1	72	1.00
1043154--1043232	8	9.2	9	80	12	51	25	1	1	72	1.00
1043252--1043870	58	10.7	58	76	10	482	43	7	13	35	1.72
1043252--1043870	116	5.3	116	83	6	600	43	7	13	35	1.72
1043270--1043872	174	3.5	171	82	6	655	43	7	13	35	1.72
1049390--1049423	17	2.0	17	88	11	52	50	0	41	8	1.34
1054296--1054370	14	5.4	14	90	6	91	78	0	16	5	0.92
1054328--1054365	19	2.0	20	89	5	60	76	0	18	5	0.97
1055340--1055466	42	3.0	41	83	7	175	29	16	16	37	1.91
1055346--1055592	44	5.7	44	76	8	211	26	15	17	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055352--1055606	88	2.9	87	81	5	268	26	15	18	39	1.90
1055783--1055840	13	4.3	14	83	12	77	22	1	1	74	1.01
1055783--1055840	7	8.6	7	83	12	77	22	1	1	74	1.01
1055783--1055841	21	3.0	20	88	11	86	22	1	1	74	1.00
1055866--1056015	4	36.5	4	69	19	71	33	2	1	62	1.17
1055870--1056015	15	10.6	14	70	26	100	33	2	1	62	1.18
1056792--1056826	17	2.0	17	88	5	52	11	45	31	11	1.76
1056963--1057352	58	6.7	59	79	10	421	47	6	11	34	1.65
1058053--1058178	36	3.5	36	77	1	99	19	18	16	46	1.85
1058700--1058919	36	6.1	36	84	4	219	16	16	18	48	1.81
1059545--1059578	13	2.6	13	85	0	50	85	11	2	0	0.71
1060309--1060353	21	2.3	18	82	14	54	68	2	2	26	1.12
1060729--1060773	21	2.2	21	92	4	74	48	28	4	17	1.66
1064895--1064923	14	2.1	14	100	0	58	58	0	6	34	1.25
1070673--1070739	4	16.5	4	78	9	64	20	4	4	70	1.23
1070782--1070922	57	2.4	56	75	15	135	48	8	6	36	1.59
1075274--1075343	9	8.3	9	72	25	55	77	0	4	18	0.93
1075338--1075368	9	3.4	9	100	0	62	61	0	19	19	1.35
1075279--1075369	16	5.4	17	76	17	82	71	0	10	17	1.14
1075338--1075377	18	2.2	18	86	8	55	62	0	22	15	1.32
1075378--1075402	13	1.9	13	100	0	50	56	16	8	20	1.65
1076254--1076297	3	14.7	3	100	0	88	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077673--1077719	19	2.5	18	80	10	58	63	0	6	29	1.19
1081522--1081552	15	2.1	15	93	0	53	58	0	3	38	1.15
1085365--1085430	13	4.8	14	70	20	50	13	24	1	60	1.42
1089650--1090249	48	12.6	47	80	7	606	28	12	22	36	1.91
1089650--1090249	94	6.3	94	82	5	647	28	12	22	36	1.91
1090480--1090571	32	2.7	33	77	18	91	1	20	3	75	1.01
1091860--1091906	19	2.5	18	80	10	58	63	0	6	29	1.19
1093085--1093214	21	5.9	21	80	11	127	37	4	16	41	1.69
1093085--1093214	45	3.0	44	84	7	158	37	4	16	41	1.69
1093681--1093810	31	4.0	32	77	8	106	38	10	8	43	1.69
1093992--1094098	36	2.9	35	79	8	124	31	14	10	42	1.80
1094047--1094115	19	3.7	19	72	12	54	28	11	11	47	1.75
1093987--1094080	18	5.2	18	72	2	71	30	14	11	42	1.82
1093987--1094124	73	1.9	72	83	7	181	30	14	10	44	1.79
1093982--1094111	37	3.6	36	77	7	136	30	13	11	43	1.80
1094222--1094288	20	3.2	21	74	16	66	34	10	16	38	1.83
1094224--1094291	22	3.2	22	71	23	63	32	11	16	39	1.84
1095334--1095490	58	2.8	56	80	5	172	47	8	7	35	1.63
1095345--1095490	57	2.5	57	81	6	170	48	9	8	33	1.66
1095466--1095731	122	2.2	119	80	8	288	44	10	8	36	1.69
1110945--1110972	2	14.0	2	100	0	56	50	0	0	50	1.00
1111618--1111675	29	2.0	29	86	6	82	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111614--1111671	14	4.1	14	76	10	64	63	0	0	36	0.94
1112386--1112438	27	2.0	27	85	14	74	54	0	0	45	0.99
1113083--1113139	30	1.9	30	89	7	89	38	14	3	43	1.62
1115238--1115270	15	2.3	15	89	5	50	48	45	0	6	1.27
1117033--1117099	16	4.1	17	73	9	50	29	1	7	61	1.32
1122766--1122836	11	6.7	11	70	15	51	40	5	5	47	1.50
1122767--1122852	41	2.0	42	88	4	129	38	4	8	48	1.54
1127064--1127099	18	1.9	19	88	5	56	61	0	0	38	0.96
1127075--1127101	14	1.9	14	100	0	54	59	0	0	40	0.98
1137018--1137064	12	3.5	13	76	23	53	38	0	0	61	0.96
1137009--1137054	8	5.9	8	80	12	51	34	0	0	65	0.93
1137012--1137079	28	2.5	28	79	13	70	39	0	0	60	0.97
1138691--1138723	15	2.1	17	88	11	52	30	0	6	63	1.18
1139808--1139837	15	1.9	15	93	6	51	76	0	0	23	0.78
1144660--1144688	15	1.9	15	100	0	58	41	0	10	48	1.37
1148638--1148697	29	2.0	30	87	9	88	71	5	0	23	1.05
1148864--1148906	18	2.4	18	84	7	52	65	0	4	30	1.13
1160903--1161251	49	7.1	49	83	1	380	31	11	17	39	1.85
1164003--1164093	28	3.2	28	69	16	80	36	32	24	6	1.81
1163993--1164115	56	2.2	55	87	8	178	36	34	22	5	1.78
1163993--1164121	57	2.3	57	85	10	185	36	34	23	5	1.78
1176718--1177458	47	15.7	48	90	6	1128	28	11	25	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1176718--1177458	95	7.8	95	91	6	1122	28	11	25	34	1.90
1177626--1177674	5	10.0	5	80	12	57	81	14	4	0	0.83
1177630--1177700	25	2.8	24	79	10	70	78	11	7	2	1.04
1177895--1177969	34	2.3	32	81	6	89	45	12	18	24	1.83
1178661--1178708	12	3.8	12	76	15	51	33	43	18	4	1.69
1179208--1179265	16	3.6	16	79	9	64	46	27	6	18	1.75
1179394--1179675	141	2.0	141	99	0	555	38	12	16	32	1.86
1182625--1182650	13	2.0	13	100	0	52	23	0	0	76	0.78
1182622--1182660	11	3.4	11	83	13	51	28	0	2	69	1.02
1194050--1194440	59	6.7	56	81	9	435	34	13	7	45	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84