genome.fa.s157.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  33  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7590460--7590518	30	1.9	32	83	13	79	44	1	0	54	1.10
7590537--7590583	21	2.4	19	79	10	58	42	2	0	55	1.12
7598494--7598541	25	2.0	22	88	11	69	35	0	0	64	0.94
7602101--7602131	2	15.5	2	93	0	53	48	0	51	0	1.00
7610375--7610421	25	1.9	25	91	4	78	42	6	2	48	1.40
7610378--7610433	25	2.2	25	84	6	69	37	8	1	51	1.44
7615411--7615525	34	3.4	33	79	4	113	35	11	16	36	1.85
7615463--7615555	34	3.0	29	82	7	96	31	13	13	40	1.85
7622278--7622314	18	2.1	19	85	10	51	48	0	0	51	1.00
7622280--7622350	29	2.4	29	79	11	83	52	0	0	47	1.00
7623378--7623410	2	16.5	2	100	0	66	48	0	0	51	1.00
7642149--7642215	33	2.0	33	91	5	109	37	19	11	31	1.88
7657940--7657987	18	2.7	18	83	3	62	62	0	0	37	0.95
7667352--7667403	15	3.5	14	74	10	50	36	0	1	61	1.07
7667349--7667450	31	3.4	29	67	20	68	39	0	2	57	1.14
7672805--7672859	28	2.1	26	83	12	69	54	0	0	45	0.99
7676306--7676780	243	2.0	243	87	0	689	27	21	16	34	1.95
7686022--7686075	27	2.0	27	96	0	99	50	18	12	18	1.78
7693627--7693669	22	2.0	22	95	0	77	44	20	20	13	1.86
7694597--7694697	47	2.2	46	89	1	148	27	5	7	58	1.50
7694600--7694697	46	2.1	47	88	1	144	27	6	8	58	1.51
7695374--7695406	13	2.5	13	86	13	50	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7695555--7695599	15	3.0	15	75	12	56	60	0	0	40	0.97
7696846--7696898	27	2.0	27	100	0	106	47	3	0	49	1.19
7697496--7697533	20	1.9	20	89	10	60	60	0	7	31	1.25
7700133--7700182	25	2.0	25	96	0	91	28	16	18	38	1.91
7704337--7704430	25	3.8	25	77	18	99	31	2	9	56	1.43
7704345--7704433	23	3.7	24	79	10	92	32	2	10	55	1.46
7704419--7704540	31	4.2	31	70	23	102	30	7	8	54	1.57
7704435--7704630	55	3.5	54	89	2	257	32	5	9	53	1.56
7704581--7704648	21	3.0	23	75	12	70	33	5	11	48	1.64
7704474--7704653	55	3.3	55	82	4	159	32	4	9	53	1.53
7704435--7704653	110	2.0	110	81	5	255	31	5	9	52	1.57
7704844--7704937	18	5.1	18	77	12	84	34	4	10	51	1.56
7704844--7704936	37	2.6	35	80	13	100	33	4	10	51	1.56
7712059--7712119	27	2.3	25	81	10	68	40	8	9	40	1.68
7712849--7712884	8	4.5	8	92	0	63	13	2	0	83	0.76
7713039--7713295	42	6.1	43	81	2	249	42	20	13	23	1.87
7713600--7713658	20	2.9	20	84	2	64	38	13	8	38	1.75
7713679--7713734	21	2.7	21	83	2	69	33	14	12	39	1.83
7713580--7713894	157	2.0	159	89	2	483	33	14	12	39	1.84
7713572--7713894	79	4.1	79	90	2	479	33	14	12	39	1.84
7713846--7713933	21	4.2	21	75	4	88	37	18	9	35	1.82
7714266--7714309	23	1.9	23	86	9	63	27	25	4	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7715185--7715263	1	79.0	1	76	0	50	10	5	0	84	0.75
7715178--7715260	9	9.6	9	79	12	75	10	6	0	83	0.81
7715194--7715251	17	3.4	16	81	13	71	12	3	0	84	0.74
7715178--7715262	36	2.4	36	88	3	129	10	5	0	83	0.80
7715185--7715263	26	3.2	24	82	12	88	10	5	0	84	0.75
7721826--7721902	12	6.6	11	75	12	57	72	10	0	16	1.11
7721826--7721902	35	2.2	34	82	11	93	72	10	0	16	1.11
7725175--7725222	2	24.0	2	95	0	87	52	0	0	47	1.00
7730912--7730936	9	2.8	9	100	0	50	12	0	0	88	0.53
7730922--7730977	20	2.8	19	75	5	58	28	1	0	69	0.98
7732465--7732545	27	3.0	27	100	0	162	37	18	11	33	1.86
7733265--7733299	17	2.1	17	89	5	54	57	11	0	31	1.34
7742757--7742781	11	2.3	11	100	0	50	40	8	0	52	1.31
7742840--7742864	13	1.9	13	100	0	50	24	24	0	52	1.48
7744238--7744286	25	1.9	25	91	4	80	75	4	16	4	1.11
7744396--7744440	13	3.2	13	82	14	54	84	0	8	6	0.78
7744769--7744801	12	2.5	13	90	9	50	72	0	3	24	0.98
7751914--7751964	21	2.4	21	93	0	84	13	50	5	29	1.65
7752749--7752784	11	3.2	11	92	7	63	0	19	0	80	0.71
7752752--7752783	12	2.7	12	100	0	64	0	12	0	87	0.54
7759160--7759209	23	2.2	23	89	10	77	76	0	2	22	0.89
7771393--7771473	40	2.1	39	81	6	92	43	1	3	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7771980--7772029	11	4.7	11	75	9	50	34	0	2	64	1.05
7772110--7772151	17	2.3	17	88	12	57	33	0	0	66	0.92
7772124--7772187	29	2.1	29	83	11	76	45	0	0	54	0.99
7782795--7782958	82	2.0	82	96	0	301	28	13	18	40	1.88
7793452--7793482	2	15.5	2	93	0	53	45	0	0	54	0.99
7793743--7793785	21	2.0	21	100	0	86	53	4	13	27	1.60
7794450--7794474	10	2.5	10	100	0	50	60	0	40	0	0.97
7796131--7796158	6	4.7	6	100	0	56	17	17	32	32	1.94
7800816--7800870	24	2.3	24	78	6	58	50	1	0	47	1.11
7800823--7800875	24	2.1	25	86	6	72	45	1	0	52	1.11
7801263--7801328	17	3.4	20	81	14	84	51	1	0	46	1.10
7801259--7801328	21	3.6	21	81	15	71	51	1	0	47	1.09
7801248--7801328	38	2.2	36	86	4	108	50	1	1	46	1.17
7801454--7801494	16	2.7	15	81	7	55	46	2	0	51	1.14
7801457--7801529	25	2.9	25	88	8	103	49	1	0	49	1.09
7801457--7801530	9	8.6	9	70	19	59	48	1	0	50	1.09
7801484--7801530	17	2.7	17	71	15	51	46	0	0	53	1.00
7802485--7802511	3	9.0	3	100	0	54	33	0	66	0	0.92
7803393--7803439	2	23.5	2	95	0	85	51	0	0	48	1.00
7803509--7803544	6	5.7	6	87	12	54	66	0	2	30	1.06
7805458--7805496	17	2.3	17	95	0	69	46	0	0	53	1.00
7815299--7815382	42	2.0	42	92	0	141	45	5	23	25	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7816634--7816699	34	2.0	34	84	3	89	27	16	24	31	1.96
7817816--7817842	2	13.5	2	100	0	54	48	0	0	51	1.00
7818766--7818822	29	2.0	28	90	6	89	45	0	0	54	0.99
7822337--7822381	2	22.5	2	95	0	81	48	0	51	0	1.00
7825696--7825813	22	5.4	22	72	10	89	37	11	5	46	1.61
7836945--7836984	16	2.5	16	95	0	71	40	2	17	40	1.63
7842020--7842069	7	7.4	7	75	8	50	82	2	2	14	0.86
7842695--7842725	10	3.0	10	90	9	53	77	0	12	9	0.99
7843897--7843955	31	1.9	31	82	6	75	28	20	20	30	1.97
7844495--7844853	60	6.0	59	86	6	442	45	8	12	33	1.72
7861185--7861247	22	2.8	23	73	9	67	52	17	1	28	1.54
7861085--7861269	89	2.1	89	80	4	203	45	13	4	36	1.65
7861239--7861300	22	2.8	22	85	2	79	43	11	8	37	1.70
7861285--7861344	22	2.7	22	73	0	57	41	15	6	36	1.73
7861329--7861370	22	1.9	22	95	0	75	50	7	0	42	1.30
7861637--7861714	22	3.5	22	87	3	102	46	10	2	41	1.51
7861706--7861762	21	2.7	20	78	10	60	42	19	12	26	1.86
7861677--7861790	43	2.6	43	77	13	117	47	14	7	29	1.73
7861636--7861801	22	7.5	22	73	12	81	45	13	6	34	1.69
7862380--7862432	12	4.2	12	78	7	52	52	1	1	43	1.23
7862388--7862448	24	2.5	25	86	7	81	52	3	1	42	1.27
7863010--7863045	14	2.5	15	86	4	56	33	2	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7863530--7863574	21	2.2	21	92	7	76	82	6	6	4	0.95
7863542--7863600	22	2.6	21	82	15	57	77	6	11	3	1.07
7864177--7864217	21	1.9	21	85	14	57	46	2	0	51	1.14
7865229--7865351	61	2.0	61	84	1	158	26	14	8	51	1.70
7865434--7865792	190	1.9	187	79	10	401	35	10	6	47	1.65
7866821--7867009	42	4.5	42	83	7	240	46	16	12	24	1.81
7867178--7867228	23	2.3	22	79	3	57	35	11	13	39	1.82
7867221--7867274	21	2.5	22	79	8	67	37	16	9	37	1.81
7867194--7867274	43	1.9	43	84	2	110	34	14	9	40	1.80
7867339--7867395	21	2.6	22	88	2	80	40	12	7	40	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84