genome.fa.s157.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  52  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12001451--12001511	22	2.8	22	85	2	79	42	9	0	47	1.36
12001452--12001548	22	4.5	22	78	6	74	38	12	1	48	1.48
12001452--12001714	22	12.2	21	66	17	60	35	11	4	48	1.59
12006395--12006436	15	3.2	13	81	15	50	71	4	11	11	1.29
12007232--12007260	2	14.5	2	100	0	58	0	48	0	51	1.00
12007849--12007883	18	1.9	17	88	11	52	62	2	8	25	1.38
12008250--12008274	2	12.5	2	100	0	50	48	0	0	52	1.00
12009688--12009728	22	1.9	21	85	5	55	41	4	7	46	1.53
12011687--12011812	60	2.0	63	86	6	177	46	1	0	51	1.16
12012196--12012408	105	2.0	104	97	2	401	34	7	11	46	1.69
12013684--12013752	34	2.0	34	94	0	120	43	8	0	47	1.34
12015276--12015333	29	2.0	29	93	0	98	29	22	10	37	1.87
12021963--12022006	21	2.1	21	84	16	56	31	2	0	65	1.05
12022274--12022310	17	2.2	17	90	0	56	40	8	8	43	1.64
12023821--12023885	31	2.1	31	91	0	103	32	27	26	13	1.94
12035829--12035892	28	2.3	28	83	5	76	31	17	10	40	1.84
12036066--12036097	16	2.0	16	93	0	55	21	50	3	25	1.64
12036340--12036394	18	3.2	17	84	5	67	65	10	5	18	1.42
12036340--12036376	16	2.3	16	90	0	56	70	8	2	18	1.25
12037819--12038219	200	2.0	200	94	1	698	46	8	7	36	1.64
12038301--12038336	18	2.0	18	89	10	56	47	0	0	52	1.00
12048274--12048675	57	6.9	57	89	5	626	33	12	7	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12048274--12048664	116	3.4	115	93	4	635	34	12	7	45	1.71
12048695--12048746	16	2.8	19	75	22	56	75	1	11	11	1.14
12048721--12048777	27	2.1	27	84	12	73	73	1	7	17	1.14
12049656--12049740	43	2.0	41	82	8	100	68	3	8	20	1.31
12049921--12049961	20	2.0	21	90	4	66	19	24	29	26	1.98
12051767--12052341	48	11.9	48	81	4	582	29	10	20	39	1.86
12051767--12052332	97	5.8	97	80	5	590	30	10	20	39	1.86
12052687--12052729	16	2.7	16	77	0	50	81	6	4	6	0.98
12053706--12053754	25	2.0	24	84	15	64	32	0	4	63	1.13
12053918--12053961	21	2.1	21	91	0	70	75	2	2	20	1.03
12054787--12054822	18	2.0	18	89	10	56	47	0	0	52	1.00
12056891--12056922	3	10.7	3	93	0	55	31	3	0	65	1.08
12058603--12058656	24	2.4	22	81	12	56	53	3	0	42	1.18
12059732--12059764	6	5.5	6	89	10	50	3	0	12	84	0.72
12062216--12062263	2	24.0	2	100	0	96	50	0	0	50	1.00
12062616--12062648	2	16.5	2	100	0	66	51	0	0	48	1.00
12063123--12063173	26	2.0	26	100	0	102	56	11	11	19	1.65
12068437--12068462	2	13.0	2	100	0	52	50	0	0	50	1.00
12071732--12072257	264	2.0	263	98	0	1007	40	14	19	26	1.89
12074155--12074181	13	2.1	13	100	0	54	48	7	7	37	1.59
12081288--12081331	19	2.4	18	82	14	54	56	4	0	38	1.20
12084177--12084326	62	2.4	63	78	10	150	38	12	11	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12084802--12084843	20	2.1	20	86	8	59	61	0	0	38	0.96
12086079--12086104	12	2.2	12	100	0	52	23	0	7	69	1.14
12087987--12088267	61	4.8	57	73	12	223	35	9	5	49	1.58
12087980--12088200	61	3.7	60	81	3	243	34	10	5	48	1.61
12088275--12088383	51	2.1	53	81	6	125	33	6	7	53	1.54
12089804--12089871	5	13.6	5	79	14	70	76	2	1	19	0.99
12090543--12090585	22	2.0	21	86	4	59	39	4	0	55	1.20
12093994--12094029	2	18.0	2	100	0	72	50	0	0	50	1.00
12102241--12102304	18	3.6	18	81	12	78	48	14	6	31	1.68
12102237--12102332	37	2.6	37	78	19	112	52	11	6	30	1.62
12102237--12102368	19	7.1	19	72	18	109	53	10	6	30	1.60
12102454--12102525	13	5.4	13	74	9	56	75	6	2	15	1.14
12103323--12103352	15	2.0	15	93	0	51	23	6	6	63	1.43
12104019--12104137	32	3.9	31	75	16	106	52	12	7	27	1.66
12104036--12104090	20	2.8	20	71	0	56	50	12	7	29	1.67
12104112--12104235	20	5.8	20	73	20	92	55	8	3	32	1.47
12104115--12104184	23	3.0	24	76	14	74	55	11	2	30	1.50
12104149--12104237	24	4.0	24	77	20	95	56	7	2	33	1.41
12104126--12104221	44	2.1	47	88	9	146	54	9	2	34	1.45
12108587--12108684	47	2.1	47	94	0	169	36	15	13	34	1.86
12115054--12115184	58	2.3	58	82	2	147	29	25	12	32	1.93
12115148--12115279	66	2.0	66	90	0	210	28	27	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12116183--12116209	12	2.2	12	100	0	54	25	33	14	25	1.95
12117265--12117352	29	3.2	28	78	15	78	32	1	4	61	1.24
12117380--12117465	30	2.9	30	78	14	74	51	1	5	41	1.33
12117450--12117514	25	2.6	24	79	13	69	66	3	0	30	1.07
12117734--12117768	18	2.0	17	88	5	52	60	0	0	40	0.97
12119849--12119896	24	2.0	23	84	4	60	16	18	8	56	1.65
12123479--12123508	4	7.8	4	92	7	53	0	0	23	76	0.78
12123595--12123634	2	20.0	2	100	0	80	50	0	0	50	1.00
12125139--12125195	25	2.3	26	82	14	75	75	5	7	12	1.17
12125316--12125357	13	3.2	13	80	9	50	83	4	2	9	0.88
12125310--12125360	7	7.0	7	81	16	59	82	3	1	11	0.89
12133254--12133395	51	2.8	51	97	0	266	32	26	5	35	1.80
12140515--12141002	270	1.8	270	93	0	841	44	7	4	43	1.52
12141797--12141872	32	2.4	32	82	6	93	31	11	15	40	1.84
12142681--12142709	3	9.7	3	100	0	58	31	0	0	68	0.89
12142973--12143023	15	3.4	15	74	15	52	19	5	25	49	1.71
12143466--12143495	15	2.0	15	93	0	51	23	0	0	76	0.78
12143583--12143629	24	1.9	24	91	4	76	68	0	0	31	0.90
12143589--12143649	30	2.0	32	87	6	90	70	1	1	26	1.06
12152762--12153043	141	2.0	141	97	1	530	31	16	14	37	1.89
12153538--12153569	16	2.0	16	93	0	55	34	0	0	65	0.93
12155579--12155639	31	2.0	31	83	0	77	31	0	4	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12156716--12156745	2	15.0	2	100	0	60	50	0	0	50	1.00
12166407--12166455	23	2.1	24	88	3	73	34	0	0	65	0.93
12166401--12166467	22	3.1	20	74	16	62	34	0	1	64	1.03
12169363--12169426	25	2.6	25	76	0	74	32	6	4	56	1.45
12172827--12172854	2	14.0	2	100	0	56	50	0	0	50	1.00
12174823--12174848	2	13.0	2	100	0	52	50	0	0	50	1.00
12176876--12176917	21	2.0	21	90	0	66	11	2	21	64	1.38
12179121--12179195	20	3.8	19	69	19	55	49	2	10	37	1.52
12179384--12179472	19	4.7	18	71	14	54	55	3	2	39	1.29
12179406--12179472	18	3.6	17	76	21	64	53	2	1	41	1.25
12179387--12179472	38	2.2	39	85	8	113	54	3	2	39	1.30
12179477--12179550	37	2.0	37	89	0	112	47	4	1	47	1.29
12191045--12191069	9	2.8	9	100	0	50	20	8	0	72	1.10
12204047--12204100	17	3.1	17	75	12	56	44	0	0	55	0.99
12204053--12204107	17	3.2	17	76	7	58	50	0	0	49	1.00
12204070--12204172	41	2.5	41	80	13	106	53	0	0	46	1.00
12216139--12216178	19	2.0	20	85	4	55	80	2	12	5	0.98
12217043--12217133	8	12.1	8	70	18	63	59	2	0	38	1.10
12217344--12217374	13	2.5	12	90	10	53	90	6	0	3	0.55
12227636--12227674	20	2.0	20	89	0	60	66	7	2	23	1.30
12229975--12230013	17	2.3	17	86	0	51	66	10	10	12	1.44
12230634--12230674	21	1.9	22	85	5	57	73	12	12	2	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12229758--12230804	525	2.0	522	85	5	1400	56	10	13	19	1.65
12230928--12231001	24	3.2	24	64	21	66	37	5	21	35	1.77
12230924--12231016	46	2.0	46	100	0	186	39	6	21	32	1.79
12230924--12230993	22	3.1	22	62	22	54	40	4	20	35	1.72
12230943--12231016	24	3.2	24	64	21	66	39	8	24	28	1.84
12231208--12231241	14	2.4	14	90	5	50	64	5	2	26	1.30
12238968--12239002	16	2.1	17	89	5	54	45	0	2	51	1.16
12241435--12241467	2	17.0	2	93	6	59	51	0	48	0	1.00
12242108--12242153	15	2.8	17	81	18	53	54	0	4	41	1.20
12242107--12242150	16	2.7	17	82	10	56	56	0	4	38	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84