genome.fa.s157.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  28  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6399016--6399040	12	2.1	12	100	0	50	16	0	24	60	1.36
6399004--6399119	58	2.0	58	96	0	214	22	3	31	43	1.70
6401949--6401992	5	8.6	5	94	2	70	77	0	18	4	0.94
6405924--6405948	2	12.5	2	100	0	50	48	0	0	52	1.00
6407797--6407969	22	7.9	22	77	2	150	37	4	9	49	1.54
6407809--6407986	66	2.7	65	78	3	187	39	4	8	47	1.54
6407821--6407986	22	7.5	22	80	5	147	40	4	8	46	1.53
6408457--6408620	22	7.5	22	81	6	97	40	5	7	46	1.55
6408457--6408615	44	3.6	44	80	5	128	40	5	7	47	1.54
6408459--6408615	66	2.4	66	82	4	185	40	5	7	47	1.54
6408615--6408676	11	5.6	11	72	0	52	43	9	3	43	1.53
6408621--6408676	22	2.5	22	91	0	94	42	8	3	44	1.53
6408621--6408724	22	4.7	22	78	4	93	34	7	8	49	1.62
6408930--6408992	22	2.9	22	80	4	65	38	14	6	41	1.71
6409007--6409064	22	2.6	22	76	10	55	34	8	5	51	1.55
6409051--6409218	22	7.6	22	70	18	75	34	5	6	53	1.50
6409028--6409121	44	2.1	44	84	0	116	34	6	7	52	1.55
6409474--6409565	22	4.2	22	78	8	107	34	8	5	51	1.56
6409476--6409536	11	5.5	11	75	7	61	37	8	6	47	1.59
6409603--6409660	22	2.6	22	83	5	73	25	5	8	60	1.47
6409676--6409759	22	3.8	22	80	9	91	34	5	2	57	1.36
6411637--6411683	23	2.0	24	84	12	62	40	2	4	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6412227--6412305	37	2.1	37	92	0	131	45	6	7	40	1.58
6413418--6413708	152	1.9	151	83	7	376	45	5	4	44	1.47
6418808--6418854	2	23.5	2	100	0	94	48	0	51	0	1.00
6430976--6431010	8	4.4	8	89	10	54	22	0	0	77	0.78
6430976--6431010	17	2.2	15	90	10	52	22	0	0	77	0.78
6431844--6431888	18	2.5	18	85	7	56	17	0	8	73	1.08
6431847--6431888	22	2.0	21	85	4	57	16	0	9	73	1.08
6432257--6432373	54	2.1	56	85	4	166	56	6	11	24	1.60
6436276--6436438	60	2.7	60	79	10	190	34	11	4	49	1.61
6436440--6436473	15	2.3	15	85	5	52	58	2	0	38	1.13
6436384--6436530	71	2.0	73	85	5	201	42	10	4	42	1.61
6436471--6436590	58	2.1	58	87	6	174	37	10	6	45	1.66
6436607--6436643	17	2.1	18	90	5	58	72	0	2	24	0.97
6436706--6436758	3	17.7	3	100	0	106	67	0	0	32	0.91
6437568--6437675	3	36.7	3	77	12	91	72	0	1	25	1.01
6437567--6437676	20	5.8	19	79	15	122	72	0	1	24	1.00
6437828--6437866	13	2.8	13	88	11	60	0	0	10	89	0.48
6437901--6438104	45	4.6	45	75	7	184	44	17	12	25	1.83
6437970--6438218	42	5.9	41	79	10	202	42	20	12	24	1.87
6437901--6438104	87	2.3	89	84	5	245	44	17	12	25	1.83
6438056--6438229	84	2.1	82	86	9	239	43	20	11	24	1.85
6449601--6449745	73	2.0	73	86	2	202	38	8	6	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6449675--6449944	59	4.6	58	79	6	251	39	10	5	44	1.61
6449852--6449888	15	2.4	16	86	8	51	56	2	2	37	1.28
6449675--6449945	117	2.3	118	79	9	308	39	9	5	45	1.61
6449955--6450021	16	4.3	15	77	7	55	76	0	4	19	0.96
6450306--6450335	15	2.1	15	93	6	53	0	43	0	56	0.99
6450829--6450905	3	25.7	3	71	15	52	68	1	2	27	1.10
6450828--6450909	7	11.9	7	71	19	57	69	1	2	26	1.08
6450824--6450913	23	4.2	21	77	15	87	72	1	2	24	1.03
6450824--6450913	43	2.1	44	82	11	109	72	1	2	24	1.03
6450822--6450913	21	4.3	20	76	13	94	72	1	2	23	1.02
6451557--6451632	9	8.1	9	80	12	82	82	0	10	6	0.82
6451552--6451665	37	3.1	36	73	13	81	75	0	15	8	1.04
6452757--6453073	46	6.8	46	83	3	343	43	10	12	34	1.76
6452810--6453073	138	1.9	137	87	2	386	43	8	13	34	1.74
6452945--6453192	117	2.1	117	85	3	329	44	7	12	34	1.71
6452933--6453232	163	1.8	163	85	4	417	43	8	13	35	1.73
6452709--6453284	209	2.8	207	82	6	635	43	9	12	34	1.75
6453062--6453394	46	7.3	46	80	7	251	40	8	15	35	1.78
6452817--6453102	138	2.1	136	82	5	331	43	8	12	35	1.72
6453016--6453347	138	2.4	134	77	13	341	41	7	14	35	1.75
6453133--6453397	21	11.9	22	78	10	261	38	9	15	35	1.81
6453224--6453397	43	4.0	43	87	5	226	36	10	16	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6453815--6454062	42	6.0	41	85	1	289	25	12	19	43	1.85
6455119--6455174	22	2.5	22	81	13	62	16	0	7	76	0.99
6455117--6455184	15	4.4	15	72	24	52	14	0	7	77	0.96
6455116--6455181	23	2.8	23	76	19	64	16	0	7	75	1.02
6460211--6460242	2	16.0	2	100	0	64	50	0	50	0	1.00
6464131--6464169	20	2.0	20	85	10	53	17	0	30	51	1.46
6464143--6464186	14	3.1	14	83	3	52	22	0	31	45	1.53
6465619--6465663	21	2.2	20	84	4	54	2	6	8	82	0.93
6465907--6466029	37	3.3	37	75	12	108	43	19	25	11	1.84
6466148--6466344	99	2.0	99	84	2	261	36	15	23	23	1.94
6471123--6471322	46	4.3	46	83	3	240	43	9	14	34	1.76
6471216--6471367	22	6.7	24	73	13	65	41	9	13	35	1.77
6471193--6471432	21	10.9	22	81	8	220	40	10	13	35	1.79
6471193--6471432	43	5.4	44	83	6	247	40	10	13	35	1.79
6471867--6472077	42	5.1	42	80	6	223	26	11	18	42	1.85
6471867--6472081	83	2.6	83	82	7	256	26	12	19	41	1.86
6472677--6472722	21	2.2	21	84	7	58	28	0	13	58	1.35
6473161--6473221	10	5.6	10	76	14	50	14	0	9	75	1.04
6473232--6473274	23	1.9	22	85	4	59	55	0	6	37	1.27
6478216--6478280	2	32.5	2	100	0	130	50	0	49	0	1.00
6482026--6482075	22	2.4	21	87	12	68	14	0	34	52	1.42
6482026--6482078	21	2.5	20	82	14	63	13	0	32	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6482177--6482222	15	3.1	15	81	6	58	26	0	30	43	1.55
6484125--6484289	87	1.9	87	84	2	224	38	18	22	20	1.93
6484117--6484303	87	2.1	86	80	5	214	35	19	23	21	1.96
6484212--6484535	112	2.9	109	82	2	414	37	18	21	22	1.95
6485112--6485467	33	11.2	33	77	7	333	36	16	18	28	1.92
6485271--6485318	24	2.0	24	95	0	87	37	14	20	27	1.92
6485238--6485416	65	3.0	57	80	9	169	37	17	18	26	1.93
6485175--6485416	122	2.0	123	87	2	353	38	16	18	27	1.92
6485139--6485449	155	2.0	156	84	1	401	36	16	18	28	1.93
6485297--6485478	65	2.8	65	87	1	267	37	17	18	26	1.92
6485297--6485482	98	1.9	98	89	2	293	37	17	18	27	1.93
6498053--6498090	20	1.9	20	84	10	51	28	13	13	44	1.81
6498223--6498290	30	2.3	29	80	7	73	26	1	25	47	1.61
6498304--6498347	14	3.1	14	90	6	70	20	0	36	43	1.52
6498303--6498347	15	3.1	15	90	6	74	20	0	37	42	1.52
6498682--6498727	18	2.5	19	82	10	60	73	4	0	21	1.00
6498699--6498744	19	2.5	19	82	6	60	76	0	2	21	0.90
6499348--6499387	18	2.2	18	86	0	53	10	7	50	32	1.64
6506249--6506282	2	17.0	2	93	0	59	47	0	52	0	1.00
6506249--6506286	12	3.2	12	96	0	67	44	0	55	0	0.99
6518823--6518847	12	2.1	12	100	0	50	60	0	0	40	0.97
6519557--6519581	12	2.1	12	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6522703--6522857	77	2.0	77	89	2	240	41	15	5	36	1.71
6530415--6530474	29	2.1	29	80	0	66	48	1	10	40	1.47
6530474--6530521	23	2.1	23	92	0	78	45	2	6	45	1.40
6541318--6541375	30	2.0	29	83	6	73	63	3	1	31	1.21
6551886--6551926	2	20.5	2	100	0	82	48	0	0	51	1.00
6560888--6560949	14	4.5	14	76	9	56	50	0	0	50	1.00
6561377--6561412	17	2.1	17	89	0	54	77	2	0	19	0.88
6561969--6562004	15	2.3	16	90	4	56	36	0	2	61	1.11
6564406--6564447	21	2.0	21	95	0	75	9	11	28	50	1.70
6565539--6565616	40	2.0	40	100	0	156	28	15	8	47	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84