genome.fa.s157.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  80  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17276910--17277069	22	8.1	19	65	24	66	46	3	1	48	1.28
17277013--17277070	23	2.6	21	73	24	55	48	3	0	48	1.18
17277343--17277406	30	2.1	30	91	0	101	54	1	0	43	1.09
17278033--17278066	14	2.3	15	90	5	52	41	2	5	50	1.42
17288290--17288330	21	2.0	20	95	4	73	24	24	17	34	1.96
17295025--17295069	3	15.0	3	100	0	90	66	0	0	33	0.92
17295363--17295419	11	4.8	11	77	14	51	50	1	5	42	1.35
17295373--17295423	23	2.1	25	85	7	70	56	0	3	39	1.18
17295529--17295581	22	2.3	21	81	15	61	54	3	0	41	1.18
17295833--17295888	16	3.6	16	79	15	64	53	0	0	46	1.00
17295829--17295939	46	2.4	47	86	4	145	49	0	2	46	1.22
17295905--17295969	32	2.0	32	90	0	103	43	0	4	52	1.22
17296466--17296498	2	16.5	2	93	0	57	48	0	3	48	1.17
17301020--17301062	18	2.4	18	84	3	52	46	0	4	48	1.22
17301030--17301069	20	2.1	18	86	9	53	45	0	5	50	1.23
17301052--17301109	24	2.5	24	83	8	75	62	0	0	37	0.96
17303663--17303717	23	2.4	23	75	6	58	52	7	0	40	1.29
17304107--17304140	18	1.9	18	88	5	52	47	0	0	52	1.00
17304116--17304168	13	4.2	13	76	11	56	50	0	0	49	1.00
17309915--17309963	22	2.2	22	85	7	64	30	10	28	30	1.90
17313007--17313056	25	2.0	26	88	4	75	48	0	2	50	1.12
17313167--17313209	19	2.3	19	84	8	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17313130--17313230	25	4.0	25	74	21	86	39	1	0	57	1.17
17320261--17320292	2	16.5	2	93	6	57	50	0	0	50	1.00
17326493--17326517	13	1.9	13	100	0	50	56	0	4	40	1.18
17326562--17326619	29	2.0	29	83	6	73	39	0	1	58	1.08
17326782--17326809	2	14.0	2	100	0	56	0	50	0	50	1.00
17328229--17328254	12	2.2	12	100	0	52	26	0	15	57	1.38
17328271--17328317	6	7.8	6	97	0	76	51	0	10	38	1.37
17343454--17343532	39	2.0	39	100	0	158	37	15	15	31	1.88
17351088--17351136	22	2.3	20	79	6	53	24	4	4	67	1.26
17351938--17351980	21	2.0	21	86	8	61	41	0	6	51	1.29
17362919--17362965	25	1.9	25	83	12	62	55	0	2	42	1.12
17362916--17362971	23	2.3	25	78	9	62	51	0	1	46	1.11
17363106--17363136	11	2.8	11	90	0	53	35	0	0	64	0.94
17363759--17363840	41	2.0	41	92	4	139	28	24	10	36	1.89
17365913--17365952	18	2.2	19	90	4	64	70	0	12	17	1.18
17366287--17366348	18	3.6	17	73	16	56	41	0	0	58	0.98
17366334--17366382	22	2.3	22	86	13	68	44	0	0	55	0.99
17366338--17366385	17	2.8	17	82	17	64	47	0	0	52	1.00
17366383--17366425	22	2.0	22	85	0	59	48	2	2	46	1.27
17366376--17366435	32	1.9	31	86	10	86	46	3	3	46	1.35
17366418--17366499	40	2.0	40	85	0	110	60	1	1	36	1.12
17366641--17366672	14	2.4	13	94	5	55	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17366641--17366672	16	1.9	16	93	6	55	28	0	0	71	0.86
17372619--17372650	16	2.0	16	100	0	64	6	18	31	43	1.75
17373813--17373892	39	2.1	39	90	0	124	22	3	37	36	1.72
17399297--17399338	20	2.0	20	86	9	57	38	16	9	35	1.81
17400077--17400101	13	1.9	13	100	0	50	32	0	0	68	0.90
17402108--17402216	56	1.9	56	96	0	200	33	8	13	44	1.74
17403086--17403131	22	2.1	22	95	0	83	28	21	10	39	1.87
17403658--17403688	3	10.3	3	100	0	62	32	0	0	67	0.91
17406476--17406517	3	14.3	3	90	5	68	2	0	28	69	1.01
17408917--17409028	59	1.9	59	98	0	215	36	11	9	41	1.75
17416162--17416186	2	12.5	2	100	0	50	52	0	0	48	1.00
17421047--17421088	3	14.0	3	100	0	84	66	0	0	33	0.92
17422044--17422081	18	2.1	19	90	5	60	50	0	0	50	1.00
17422041--17422087	18	2.8	16	78	15	58	51	0	0	48	1.00
17422055--17422125	19	4.0	19	74	18	64	59	0	0	40	0.98
17425442--17425490	22	2.2	23	78	10	66	40	2	14	42	1.57
17425449--17425491	22	2.0	22	90	0	68	41	2	11	44	1.53
17431903--17431939	18	2.0	20	89	10	60	59	2	0	37	1.12
17432129--17432190	29	2.2	29	77	13	67	46	3	3	46	1.35
17432131--17432188	28	2.1	28	81	9	66	46	3	3	46	1.36
17432810--17432844	6	5.8	6	93	0	52	11	0	20	68	1.20
17434133--17434221	44	2.0	44	97	0	169	28	13	10	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17436368--17436492	65	1.9	64	91	1	205	25	6	15	52	1.66
17445213--17445256	18	2.4	18	85	10	63	40	0	0	59	0.98
17445226--17445272	18	2.7	18	83	3	51	40	2	2	55	1.24
17446613--17446663	16	3.0	17	75	16	52	56	0	0	43	0.99
17448542--17448630	31	2.9	31	81	0	115	39	13	24	22	1.90
17448544--17448644	31	3.3	31	75	8	98	40	12	22	23	1.89
17451325--17451362	19	1.9	20	89	10	60	18	5	7	68	1.34
17454708--17454815	49	2.2	48	80	13	116	24	14	11	50	1.75
17454529--17454891	159	2.3	158	80	6	394	26	14	12	46	1.80
17454758--17454935	56	3.2	56	80	4	164	26	11	12	48	1.75
17463282--17464773	568	2.6	566	79	7	1558	34	14	13	37	1.86
17463933--17464726	295	2.7	292	82	5	920	35	14	13	36	1.86
17469378--17469431	24	2.2	25	74	9	58	44	3	3	48	1.38
17472627--17472686	30	2.0	30	96	0	111	40	15	10	35	1.80
17476858--17476915	26	2.3	25	80	13	66	31	1	3	63	1.21
17476881--17476936	19	2.9	19	84	7	60	35	0	3	60	1.14
17476905--17476953	21	2.5	19	93	6	80	44	0	0	55	0.99
17478637--17478677	21	2.0	21	90	0	64	19	19	17	43	1.88
17480083--17480363	146	1.9	146	83	0	357	49	19	7	23	1.73
17483057--17483126	35	2.1	33	82	10	81	47	0	0	52	1.00
17486608--17486653	6	7.7	6	85	0	65	15	65	2	17	1.37
17489613--17489657	19	2.3	20	85	7	58	46	15	35	2	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17490655--17490689	16	2.1	17	89	5	54	40	0	0	60	0.97
17490724--17490770	21	2.2	20	85	14	60	57	0	0	42	0.98
17491876--17491941	25	2.8	24	81	6	80	51	0	0	48	1.00
17493234--17493258	6	4.2	6	100	0	50	16	16	32	36	1.90
17496452--17496478	12	2.2	12	100	0	54	44	18	7	29	1.77
17502524--17502591	29	2.3	29	82	5	82	36	4	5	52	1.46
17502927--17502995	22	3.1	22	80	0	75	30	0	30	39	1.57
17503032--17503068	19	2.0	19	89	5	58	13	0	40	45	1.43
17503765--17504132	178	2.1	177	92	0	619	32	15	19	32	1.93
17505177--17505275	48	2.0	48	82	5	119	19	6	3	71	1.20
17506240--17506282	20	2.2	20	87	8	61	25	11	6	55	1.60
17515237--17515293	30	1.9	30	88	0	87	52	0	0	47	1.00
17517319--17517471	65	2.4	65	82	3	184	20	16	14	47	1.82
17517289--17517586	64	4.6	65	77	4	239	21	19	12	46	1.83
17517876--17517933	3	19.3	3	100	0	116	32	0	0	67	0.91
17518720--17518785	24	2.7	24	78	17	73	19	4	0	75	0.97
17518737--17518784	12	3.9	12	81	10	53	18	6	0	75	1.01
17518743--17518791	25	2.0	25	84	8	64	16	6	4	73	1.19
17522469--17522560	46	2.0	46	82	4	114	51	4	11	32	1.59
17522420--17522536	60	2.0	60	84	3	155	52	2	10	35	1.49
17522598--17522642	23	1.9	24	90	4	74	42	8	2	46	1.47
17525724--17525757	18	1.9	17	88	5	50	20	5	0	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17526591--17526672	18	5.0	16	87	12	114	75	0	12	12	1.05
17526593--17526681	26	3.5	25	81	17	96	76	1	11	11	1.08
17526592--17526673	15	5.0	16	82	12	87	76	0	12	10	1.01
17526591--17526672	8	10.0	8	86	13	114	75	0	12	12	1.05
17526601--17526681	18	4.6	18	85	13	100	76	1	11	11	1.08
17527585--17527690	45	2.3	45	80	1	113	38	4	14	42	1.66
17527872--17528036	17	9.7	17	74	6	102	38	12	10	38	1.78
17527924--17527969	9	5.3	9	79	10	51	36	13	8	41	1.75
17527896--17528036	34	4.1	34	80	6	117	39	12	9	38	1.76
17527937--17528057	33	3.6	33	77	2	116	38	13	9	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84