genome.fa.s157.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  63  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14156902--14156950	22	2.1	24	85	7	66	22	18	0	59	1.38
14160445--14160744	38	7.9	37	76	9	185	41	21	10	26	1.86
14160495--14160744	77	3.3	77	80	10	264	43	21	8	26	1.82
14160457--14160744	115	2.5	114	81	8	309	41	21	10	27	1.84
14160757--14160889	48	2.8	48	78	0	140	36	17	11	34	1.85
14166668--14166714	20	2.4	21	86	10	64	74	4	0	21	0.99
14166910--14166936	14	1.9	14	100	0	54	22	7	14	55	1.64
14173213--14173245	7	4.9	7	85	7	50	84	0	0	15	0.61
14173213--14173245	13	2.4	14	90	5	50	84	0	0	15	0.61
14173433--14173477	22	2.0	22	91	0	72	42	13	8	35	1.75
14173576--14173625	21	2.4	22	77	12	61	56	0	0	44	0.99
14173725--14173778	24	2.3	23	79	14	58	66	0	3	29	1.09
14177720--14177744	12	2.1	12	100	0	50	16	8	16	60	1.58
14180650--14180916	139	1.9	138	84	9	359	31	7	9	51	1.62
14180961--14180994	11	3.2	11	87	8	52	52	0	0	47	1.00
14180961--14180995	10	3.4	10	92	4	52	51	0	0	48	1.00
14181148--14181183	18	2.1	18	90	10	58	0	13	5	80	0.88
14181203--14181259	24	2.4	23	80	11	62	45	0	3	50	1.18
14181694--14181740	21	2.3	20	82	13	60	31	0	2	65	1.04
14181720--14181750	13	2.4	13	94	0	53	45	0	0	54	0.99
14182204--14182358	80	1.9	83	86	4	226	38	18	12	30	1.89
14182803--14182878	9	7.8	9	71	16	53	36	1	2	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14182803--14182878	21	3.8	20	76	13	68	36	1	2	59	1.20
14182827--14182864	19	2.0	19	89	0	58	42	0	2	55	1.14
14184483--14184519	16	2.3	17	86	9	51	32	0	0	67	0.91
14184929--14184967	20	1.9	21	89	5	62	7	5	7	79	1.05
14195483--14195527	6	7.5	6	85	7	56	8	0	4	86	0.69
14195476--14195527	18	2.9	17	83	11	59	9	1	3	84	0.82
14196599--14196645	16	2.9	16	82	14	60	8	6	4	80	1.00
14208779--14208885	55	1.9	55	96	0	196	34	14	11	40	1.81
14209132--14209157	12	2.2	12	100	0	52	38	15	7	38	1.76
14211430--14211570	19	7.4	19	72	8	83	46	36	0	17	1.49
14211430--14211628	7	28.9	7	67	22	75	44	35	0	19	1.55
14218312--14218342	12	2.6	12	94	0	53	67	6	12	12	1.40
14219546--14219618	9	8.3	9	72	17	64	83	4	10	1	0.84
14219547--14219612	25	2.6	24	83	7	78	83	4	10	1	0.86
14219546--14219587	19	2.3	18	87	4	57	85	2	11	0	0.68
14219547--14219618	19	3.6	19	74	18	56	83	4	11	1	0.85
14229581--14229628	25	2.0	24	87	4	69	77	4	2	16	1.03
14229582--14229635	25	2.2	24	83	3	63	77	3	5	12	1.07
14230589--14230648	22	2.8	22	87	9	81	68	3	0	28	1.05
14230589--14230642	3	18.3	3	77	11	58	68	1	0	29	1.00
14230589--14230650	25	2.5	23	78	14	70	69	3	0	27	1.04
14231105--14231422	110	2.9	107	82	2	384	45	16	21	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14242470--14242518	15	3.2	15	85	2	62	36	4	2	57	1.30
14242596--14242637	19	2.3	19	87	4	59	78	4	2	14	1.01
14243492--14243575	28	3.0	27	72	16	73	67	4	4	22	1.28
14245617--14245671	13	4.2	13	81	9	58	43	32	0	23	1.54
14245629--14245764	20	6.8	20	69	15	102	43	32	0	23	1.59
14245621--14245761	60	2.4	59	85	7	187	41	33	0	24	1.60
14245616--14245811	7	29.3	7	67	16	76	44	32	0	22	1.57
14245708--14245790	13	6.2	13	76	13	64	45	30	0	24	1.53
14245620--14245777	20	7.9	19	69	14	88	43	32	0	23	1.59
14245709--14245790	20	4.1	20	73	10	60	46	30	0	23	1.53
14250914--14250996	42	2.0	42	97	0	157	30	33	3	32	1.75
14259677--14259709	17	1.9	17	93	0	57	57	0	9	33	1.30
14260406--14260449	20	2.1	21	91	8	72	38	0	0	61	0.96
14261173--14261236	25	2.5	25	80	9	67	65	1	0	32	1.02
14261169--14261230	26	2.2	30	78	16	71	64	0	0	35	0.94
14263132--14263171	6	6.7	6	91	8	64	65	2	0	32	1.06
14265374--14265411	13	2.9	13	80	11	51	68	2	0	28	1.03
14278354--14278512	41	3.9	41	78	4	151	33	15	20	30	1.94
14278727--14279215	117	4.2	117	77	7	460	23	25	14	35	1.93
14278740--14279181	234	1.9	234	84	3	595	23	26	15	35	1.94
14279656--14279712	3	18.7	3	82	10	71	28	0	1	70	0.98
14282212--14282244	17	1.9	17	93	0	57	27	0	27	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14282500--14282531	14	2.3	14	94	0	55	31	6	25	37	1.81
14289512--14289595	44	1.9	44	87	0	123	23	17	16	41	1.89
14291402--14291454	21	2.5	20	79	8	61	52	13	7	26	1.66
14291587--14291626	20	2.0	20	85	9	55	60	10	0	30	1.30
14293627--14293653	2	13.5	2	100	0	54	51	0	0	48	1.00
14308967--14309011	21	2.1	22	83	4	56	20	6	2	71	1.20
14308996--14309065	35	2.0	35	97	0	131	34	10	2	52	1.49
14314666--14314694	7	4.1	7	100	0	58	13	13	44	27	1.82
14318410--14318457	20	2.7	18	81	15	55	31	0	8	60	1.26
14318485--14318519	17	2.1	17	89	10	54	34	0	0	65	0.93
14318580--14318618	20	2.0	19	85	5	51	35	0	2	61	1.10
14319036--14319064	8	3.8	8	95	4	51	37	0	0	62	0.96
14319015--14319348	164	2.0	164	99	0	659	33	10	8	47	1.69
14319200--14319228	8	3.8	8	95	4	51	37	0	0	62	0.96
14322333--14322632	86	3.5	84	83	5	341	47	15	16	21	1.83
14322839--14322871	17	1.9	17	93	0	57	42	6	15	36	1.71
14322835--14323014	34	5.3	34	68	15	113	39	12	17	30	1.87
14323056--14323167	51	2.2	51	79	6	120	36	11	17	33	1.86
14322835--14323264	68	6.3	68	74	4	339	37	11	19	31	1.88
14323221--14323289	17	4.1	17	78	0	75	33	10	18	37	1.85
14322857--14323252	34	11.6	34	74	4	246	38	12	19	29	1.88
14323207--14323317	51	2.2	51	82	6	136	34	13	19	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14323350--14323405	20	2.6	22	77	11	62	39	12	7	41	1.70
14324381--14324630	128	2.0	127	88	2	376	22	16	13	48	1.81
14324618--14324702	23	3.5	23	72	18	66	9	15	0	75	1.04
14324635--14324684	7	6.7	7	82	17	57	14	14	0	72	1.14
14324673--14324715	20	2.1	21	86	4	61	2	13	0	83	0.74
14328562--14328865	60	5.1	59	81	10	339	33	11	6	49	1.64
14328562--14328850	123	2.4	121	83	9	374	33	11	6	48	1.64
14328562--14328865	59	5.1	58	80	9	317	33	11	6	49	1.64
14330483--14330610	37	3.4	39	77	16	119	50	5	8	35	1.56
14330605--14330646	18	2.3	18	88	12	59	42	9	11	35	1.74
14330623--14330726	40	2.6	40	82	0	127	41	8	14	35	1.77
14330683--14330816	73	1.9	73	81	6	166	50	5	9	33	1.59
14331511--14331653	62	2.3	63	86	7	202	30	7	18	43	1.78
14331699--14331906	62	3.3	61	75	13	185	37	10	12	38	1.79
14331838--14331977	73	1.9	73	85	2	192	34	12	12	41	1.79
14331775--14332041	135	2.0	136	79	9	296	36	12	12	38	1.81
14334881--14334958	35	2.3	35	81	2	95	37	21	14	26	1.92
14342812--14342856	20	2.2	21	88	4	65	44	0	2	53	1.13
14345336--14345366	3	10.3	3	92	0	53	32	3	0	64	1.09
14358398--14358433	16	2.2	16	90	0	54	72	2	5	19	1.17
14360171--14360212	3	14.0	3	100	0	84	66	0	0	33	0.92
14360515--14360562	19	2.5	19	75	0	51	47	31	8	12	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14361198--14361244	23	2.0	25	83	8	62	40	2	6	51	1.39
14361296--14361331	19	2.1	19	85	15	51	36	2	8	52	1.46
14361837--14361863	14	1.9	14	100	0	54	62	0	0	37	0.95
14366402--14366445	21	2.0	22	86	4	63	13	22	6	56	1.61
14366933--14366963	13	2.4	13	94	0	53	16	0	22	61	1.34
14367434--14367504	35	2.0	35	100	0	142	29	16	8	45	1.77
14367969--14368037	16	4.2	17	76	10	72	21	2	8	66	1.32
14368382--14368425	20	2.3	18	88	7	61	25	2	4	68	1.20
14373501--14373585	4	21.0	4	69	15	50	23	5	4	65	1.34
14374448--14374498	17	3.1	16	88	8	68	19	0	1	78	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84