genome.fa.s157.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  69  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14991667--14991703	2	18.5	2	100	0	74	48	0	0	51	1.00
14991841--14991865	2	12.5	2	100	0	50	48	0	0	52	1.00
14991679--14992000	161	2.0	162	96	1	594	26	14	10	47	1.77
15003282--15003319	18	2.1	18	85	9	51	52	7	2	36	1.45
15003736--15003781	18	2.7	17	86	6	58	65	2	0	32	1.05
15007981--15008023	22	1.9	22	90	4	68	79	0	18	2	0.85
15007983--15008023	11	3.6	12	80	12	59	78	0	19	2	0.87
15007981--15008040	12	4.8	12	74	14	50	75	0	18	6	1.02
15007969--15008021	11	4.8	11	75	15	56	79	0	16	3	0.88
15011220--15011312	47	2.0	47	89	0	141	37	25	9	26	1.87
15012298--15012553	59	4.4	59	83	7	317	36	12	6	44	1.68
15012298--15012574	60	4.7	60	83	5	316	36	11	6	45	1.66
15012588--15012644	5	10.6	5	82	17	62	82	0	1	15	0.75
15012588--15012645	6	10.5	6	80	15	72	82	0	1	15	0.74
15012588--15012645	11	5.3	11	87	8	91	82	0	1	15	0.74
15012592--15012643	27	1.9	27	92	7	88	82	0	1	15	0.75
15013514--15013543	13	2.4	13	94	5	53	86	0	0	13	0.57
15013563--15013665	4	25.5	4	68	20	54	66	1	3	27	1.19
15013562--15013596	11	3.3	11	88	8	54	60	0	5	34	1.21
15013523--15013664	7	20.3	7	68	24	54	66	1	4	27	1.18
15013634--15013705	19	4.1	17	78	18	60	75	2	1	20	1.01
15013659--15013705	5	8.6	5	82	17	58	76	4	2	17	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15013679--15013709	15	2.1	15	93	0	53	80	3	0	16	0.83
15013940--15014210	83	3.2	83	80	7	285	39	20	14	25	1.91
15013893--15014210	41	7.4	44	78	9	300	38	20	15	25	1.91
15013893--15014185	127	2.2	132	83	7	375	39	20	14	25	1.90
15013893--15014229	83	3.9	82	77	10	243	39	19	14	25	1.90
15015235--15015279	8	5.8	8	84	5	65	8	11	0	80	0.92
15015234--15015282	9	6.0	9	75	22	54	10	12	0	77	0.99
15015235--15015279	15	2.9	15	87	6	63	8	11	0	80	0.92
15025355--15025446	28	3.2	29	66	18	75	44	8	8	38	1.66
15025488--15025581	30	3.2	30	67	24	90	34	12	9	43	1.75
15025213--15025601	57	6.7	58	84	5	432	37	12	7	42	1.72
15025618--15025658	15	2.8	15	92	3	66	82	0	2	14	0.76
15025681--15025721	4	11.2	4	89	10	54	78	0	0	21	0.76
15025680--15025732	22	2.5	20	83	16	72	77	0	1	20	0.87
15025921--15025963	15	2.9	15	83	16	54	0	44	0	55	0.99
15026530--15026564	11	3.3	11	88	8	54	60	0	5	34	1.21
15026517--15026572	26	2.2	26	81	12	62	60	1	3	33	1.24
15026603--15026671	19	3.6	18	73	24	61	75	4	1	18	1.05
15026603--15026661	13	4.5	13	70	16	50	76	3	1	18	1.02
15032235--15032267	16	2.1	16	94	0	57	48	18	0	33	1.48
15032562--15032601	20	2.0	20	90	9	64	60	5	5	30	1.40
15033605--15033669	34	1.9	34	90	6	105	36	3	16	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15033608--15033680	34	2.1	34	80	9	78	42	4	15	38	1.66
15042242--15042303	31	2.0	31	84	12	83	12	1	35	50	1.51
15042298--15042336	17	2.3	17	86	0	51	15	2	38	43	1.60
15043386--15043426	3	13.7	3	100	0	82	68	0	0	31	0.90
15044696--15044721	6	4.3	6	100	0	52	19	0	0	80	0.71
15044843--15044890	17	2.8	18	74	20	50	25	12	10	52	1.71
15045148--15045179	12	2.7	12	95	0	55	68	6	0	25	1.12
15045293--15045377	38	2.2	38	85	0	107	45	23	11	18	1.82
15045309--15045394	12	6.9	12	75	7	64	46	22	13	17	1.83
15045310--15045386	25	3.0	25	79	7	84	48	20	12	18	1.81
15045320--15045394	25	3.0	25	80	2	87	46	22	13	17	1.82
15048714--15048747	4	8.5	4	86	0	50	23	23	5	47	1.73
15051140--15051205	20	3.3	19	81	14	62	72	1	19	6	1.13
15051174--15051219	11	4.3	11	76	13	51	73	2	21	2	1.04
15051174--15051221	20	2.4	20	89	6	71	75	2	20	2	1.02
15051552--15051584	14	2.5	13	95	5	57	87	0	12	0	0.53
15052353--15052447	22	4.3	22	80	0	109	32	22	21	24	1.98
15052351--15052458	44	2.5	44	78	0	126	33	21	19	25	1.97
15052683--15052798	32	3.6	30	78	9	106	40	16	14	28	1.88
15052682--15052798	33	3.6	32	77	10	105	40	17	14	28	1.88
15052802--15052840	16	2.4	16	95	0	69	30	7	10	51	1.64
15052922--15052954	16	2.1	16	94	0	57	30	9	12	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15052808--15053049	114	2.1	114	98	0	466	40	15	10	33	1.81
15053052--15053144	33	2.8	33	76	7	91	34	21	16	27	1.95
15053122--15053154	17	1.9	17	93	0	57	45	24	12	18	1.83
15053341--15053428	8	10.6	8	71	11	52	79	5	5	9	1.05
15053337--15053427	15	6.2	15	70	13	55	79	5	5	9	1.06
15053768--15053804	17	2.2	17	90	0	56	81	0	2	16	0.81
15055676--15055733	19	3.3	18	74	18	59	41	25	12	20	1.87
15055693--15055722	15	2.0	15	93	0	51	40	16	13	30	1.87
15060977--15061092	33	3.5	33	75	15	105	16	12	18	52	1.74
15061138--15061357	59	3.7	59	80	9	191	37	7	5	48	1.56
15061137--15061362	61	3.7	61	79	11	234	37	7	5	49	1.55
15061437--15061508	18	4.1	18	70	10	67	70	6	2	19	1.22
15067769--15067807	17	2.4	17	84	16	55	17	0	2	79	0.84
15067767--15067815	22	2.3	21	78	3	53	22	2	2	73	1.04
15070403--15070438	17	2.3	15	90	9	54	13	5	0	80	0.88
15070559--15070624	19	3.4	19	74	10	53	31	4	9	54	1.52
15070569--15070625	21	2.8	21	84	5	64	35	5	10	49	1.60
15070626--15070671	19	2.7	16	75	18	56	28	4	13	54	1.57
15070688--15070726	15	2.6	15	84	8	53	28	7	12	51	1.67
15072514--15072561	3	16.3	3	84	4	62	31	2	4	62	1.26
15073398--15073473	38	2.0	39	89	7	120	19	3	3	72	1.17
15073400--15073486	38	2.3	39	86	6	115	21	2	4	71	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15074460--15074545	40	2.2	40	97	0	163	25	15	6	52	1.67
15074485--15074549	21	3.2	21	64	16	55	27	16	6	49	1.70
15084158--15084196	11	3.7	10	83	10	51	84	0	2	12	0.72
15084159--15084196	19	2.0	20	89	5	60	84	0	2	13	0.73
15084190--15084423	47	5.1	45	75	11	190	45	15	20	17	1.85
15084235--15084395	45	3.5	44	76	10	153	46	16	20	16	1.84
15084190--15084399	92	2.3	93	85	3	282	44	16	20	18	1.86
15084190--15084423	92	2.5	92	82	3	274	45	15	20	17	1.85
15085118--15085553	114	3.8	113	77	4	408	24	24	13	36	1.92
15085893--15085918	3	8.7	3	100	0	52	0	0	30	69	0.89
15085919--15085944	3	8.7	3	100	0	52	30	0	0	69	0.89
15086744--15086784	19	2.2	19	86	4	57	14	2	4	78	1.03
15086737--15086794	5	11.8	5	78	14	50	13	3	3	79	0.99
15086848--15086916	20	3.2	21	76	12	52	49	1	5	43	1.35
15086883--15086926	20	2.3	19	84	11	54	68	4	2	25	1.20
15090269--15090303	18	1.9	18	88	0	52	60	8	5	25	1.49
15097158--15097185	14	2.0	14	100	0	56	42	28	7	21	1.79
15097208--15097263	13	4.2	13	80	11	69	48	35	0	16	1.46
15097208--15097264	20	2.8	21	82	12	66	49	35	0	15	1.45
15101600--15101655	21	2.7	21	76	15	55	55	0	1	42	1.10
15115297--15115884	293	2.0	293	98	0	1140	27	15	20	35	1.93
15116477--15116521	18	2.6	17	82	6	54	26	2	8	62	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15116639--15116752	18	6.3	18	77	7	97	24	1	9	64	1.34
15116671--15116752	17	4.6	17	79	13	76	23	1	9	65	1.29
15116627--15116723	6	16.0	6	75	10	72	26	1	8	63	1.29
15116772--15116796	13	1.9	13	100	0	50	80	12	0	8	0.92
15118096--15118126	4	7.8	4	92	0	53	22	3	0	74	0.96
15118195--15118259	18	3.3	18	71	19	58	40	4	7	47	1.53
15118217--15118507	120	2.4	119	79	10	308	32	7	10	49	1.65
15118172--15118513	41	8.6	40	80	7	290	33	6	9	50	1.62
15118456--15118521	11	6.2	12	70	25	51	28	6	13	51	1.65
15118172--15118513	20	17.2	20	81	8	265	33	6	9	50	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84