genome.fa.s157.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  62  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13900093--13900536	98	4.6	98	77	8	397	30	12	12	45	1.79
13900085--13900599	49	10.4	49	73	10	268	30	11	12	45	1.77
13900414--13900604	48	3.8	51	77	8	169	32	8	14	44	1.75
13900628--13900682	24	2.3	24	90	3	85	85	7	0	7	0.74
13903484--13903530	21	2.1	23	84	7	62	21	14	6	57	1.60
13901430--13904318	721	4.0	718	86	4	3891	33	14	15	37	1.88
13905144--13905205	32	1.9	32	83	6	81	50	33	0	16	1.45
13909821--13909938	62	1.9	62	84	5	159	32	16	15	36	1.90
13909821--13909963	62	2.3	62	82	5	157	34	15	15	34	1.89
13911069--13911162	20	4.8	20	72	12	77	44	37	1	17	1.55
13911071--13911211	7	21.3	7	71	15	77	47	33	1	17	1.57
13911052--13911222	13	13.8	13	66	15	76	48	33	1	16	1.54
13911093--13911154	32	1.9	32	87	6	90	46	33	1	17	1.58
13911066--13911164	39	2.6	38	78	12	94	47	35	1	16	1.53
13911176--13911223	20	2.6	18	83	6	60	54	33	0	12	1.38
13911169--13911246	13	6.1	13	73	21	58	50	32	0	17	1.47
13915895--13915924	16	1.9	16	93	6	53	0	16	0	83	0.65
13925921--13926048	37	3.4	37	78	2	121	40	10	15	32	1.82
13931004--13931083	29	2.7	30	81	14	96	3	27	1	67	1.15
13931014--13931066	23	2.3	24	83	6	65	5	24	1	67	1.22
13934262--13934315	11	5.1	11	80	13	51	57	1	0	40	1.09
13934459--13934532	24	3.1	24	96	0	130	18	27	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13943884--13943961	38	2.1	38	92	0	129	29	8	30	30	1.88
13944856--13944909	20	2.6	21	82	2	74	29	24	25	20	1.99
13948889--13948930	14	2.8	15	85	10	59	61	4	21	11	1.48
13957266--13957538	144	1.9	143	84	2	368	30	8	17	43	1.79
13957481--13957944	161	2.9	159	78	3	459	34	10	14	41	1.79
13957409--13958471	480	2.2	481	78	5	1038	32	9	14	42	1.78
13957781--13958504	320	2.3	320	80	3	796	32	9	14	42	1.78
13957415--13958504	161	6.8	159	73	9	444	33	9	14	42	1.78
13963456--13963498	21	2.0	21	82	8	52	34	6	20	37	1.80
13964169--13964205	19	1.9	19	94	0	65	35	2	18	43	1.65
13964172--13964215	19	2.3	19	84	0	52	38	4	18	38	1.71
13966296--13966537	93	2.6	94	82	4	285	37	19	12	30	1.89
13968187--13969600	161	8.8	161	77	4	1158	32	10	15	41	1.81
13968192--13969541	481	2.8	481	81	3	1506	32	10	15	41	1.81
13968187--13969540	642	2.1	641	80	3	1501	32	10	15	41	1.81
13973697--13973743	25	1.9	24	83	12	60	72	17	0	10	1.12
13977160--13977186	14	1.9	14	100	0	54	51	0	33	14	1.43
13997448--13997494	22	2.1	22	84	7	60	61	0	4	34	1.15
13997655--13997700	23	2.0	23	88	12	69	36	6	0	56	1.25
14000029--14000077	20	2.4	20	86	3	62	53	10	6	30	1.59
14009130--14009181	3	17.3	3	95	0	95	32	0	1	65	1.04
14012631--14012656	13	2.0	13	100	0	52	30	7	30	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14014009--14014043	2	17.5	2	100	0	70	51	0	0	48	1.00
14015864--14015909	16	2.9	16	81	12	60	78	2	0	19	0.86
14016730--14017043	44	7.7	43	72	15	200	42	14	14	28	1.84
14016773--14016844	36	2.0	36	94	0	126	43	15	12	29	1.83
14017848--14017904	21	2.7	21	86	10	89	29	26	22	21	1.99
14020275--14020305	16	1.9	16	93	0	53	38	9	3	48	1.52
14022593--14022685	17	5.2	18	73	13	68	38	12	12	35	1.82
14022638--14022692	17	3.2	17	81	2	65	41	10	9	38	1.72
14022706--14022764	17	3.4	17	69	19	50	27	5	20	47	1.71
14022750--14022802	16	3.2	16	78	19	63	26	16	26	30	1.97
14022969--14023113	17	8.5	17	80	3	121	35	11	19	34	1.87
14022955--14023113	34	4.7	34	78	6	135	35	11	18	34	1.87
14023287--14023407	46	2.6	45	78	10	129	37	14	9	39	1.77
14023287--14023353	22	2.9	23	73	4	64	40	14	7	37	1.75
14024491--14024524	13	2.6	13	90	0	50	2	11	2	82	0.89
14028551--14028864	58	5.3	58	81	10	354	32	13	8	45	1.73
14028552--14028860	59	5.3	59	82	9	323	33	13	8	44	1.74
14028838--14028889	14	3.6	14	80	12	61	36	5	3	53	1.43
14028779--14028938	88	1.8	88	90	1	259	33	9	7	49	1.63
14028953--14029010	29	2.0	29	87	12	84	75	0	3	20	0.94
14028953--14028995	15	2.9	15	82	6	52	76	0	4	18	0.95
14028984--14029008	13	1.9	13	100	0	50	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14029076--14029126	22	2.3	22	100	0	102	11	29	33	25	1.91
14030039--14030157	4	30.2	4	67	20	56	67	1	2	28	1.13
14030002--14030076	14	5.3	16	68	28	55	61	4	5	29	1.36
14030017--14030224	30	7.1	29	71	17	110	68	1	2	26	1.14
14030093--14030221	17	8.3	15	66	16	50	72	0	2	24	1.02
14030148--14030184	19	1.9	19	89	10	58	64	0	5	29	1.15
14030417--14030792	43	8.8	43	82	6	419	40	19	15	24	1.90
14030417--14030792	85	4.4	85	82	6	415	40	19	15	24	1.90
14031795--14031850	18	3.2	17	87	9	78	5	14	0	80	0.88
14042086--14042127	21	1.9	23	85	9	61	35	4	4	54	1.42
14044395--14044441	21	2.1	23	84	7	62	57	6	14	21	1.60
14043612--14046499	715	4.0	719	85	4	3823	36	15	14	33	1.88
14047249--14047290	12	3.4	12	80	6	57	7	0	9	83	0.81
14047254--14047286	17	1.9	17	88	11	50	9	0	12	78	0.95
14047327--14047543	50	4.3	49	76	11	154	46	12	8	32	1.71
14047328--14047520	48	3.8	50	78	10	151	45	12	7	33	1.71
14047407--14047853	49	9.1	49	75	5	348	44	12	12	30	1.78
14047433--14047853	147	2.9	144	77	7	398	45	12	12	30	1.78
14048535--14048664	31	4.3	31	72	11	99	30	20	16	33	1.94
14048949--14048994	21	2.1	22	88	4	67	6	15	0	78	0.95
14049102--14049135	14	2.5	13	86	13	50	2	0	8	88	0.62
14049578--14049606	8	3.8	8	95	4	51	0	6	0	93	0.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14050058--14050087	14	2.1	14	100	0	60	0	13	0	86	0.57
14052024--14052095	36	2.0	36	88	0	108	22	12	13	51	1.75
14057913--14058187	137	2.0	138	97	0	525	38	17	9	34	1.82
14068265--14068312	17	2.9	16	84	12	53	56	0	0	43	0.99
14068367--14068420	17	3.1	17	75	5	54	24	7	1	66	1.27
14068829--14068925	22	4.1	21	71	21	59	47	0	0	52	1.00
14068885--14068938	16	3.6	16	76	18	62	50	0	0	50	1.00
14068891--14068962	28	2.4	31	80	15	89	58	0	0	41	0.98
14068891--14068962	30	2.4	29	80	15	85	58	0	0	41	0.98
14068940--14068977	16	2.2	17	86	9	51	73	0	0	26	0.83
14069364--14069406	17	2.5	17	81	11	52	58	0	2	39	1.11
14070702--14070746	6	7.5	6	87	9	65	15	2	66	15	1.35
14079165--14079214	24	2.1	24	100	0	100	38	4	16	42	1.66
14079169--14079228	24	2.5	24	89	5	86	41	1	15	41	1.56
14089597--14089630	9	3.6	9	88	11	50	11	11	0	76	1.02
14091936--14091975	19	2.1	19	85	4	53	7	12	2	77	1.07
14092511--14092739	112	2.0	112	93	0	395	37	13	16	33	1.87
14093662--14093699	19	2.0	19	89	0	58	44	15	10	28	1.80
14111701--14111761	19	3.3	19	84	8	65	39	3	0	57	1.15
14111709--14111762	19	2.8	19	85	0	72	42	3	0	53	1.18
14111986--14112040	19	2.8	19	83	5	56	10	1	7	80	0.99
14112096--14112161	33	1.9	36	84	9	93	15	12	3	69	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14112508--14112575	9	7.8	8	73	15	55	13	8	0	77	0.98
14112506--14112551	20	2.4	19	82	13	58	10	6	0	82	0.83
14112520--14112576	26	2.2	27	78	15	66	15	8	0	75	1.04
14112508--14112575	25	2.5	27	82	15	79	13	8	0	77	0.98
14120982--14121161	90	2.0	90	100	0	360	26	17	25	30	1.98
14121496--14121524	14	2.1	14	100	0	58	34	20	6	37	1.80
14121744--14121776	16	1.9	18	88	11	52	36	9	3	51	1.49
14145570--14145597	2	14.0	2	100	0	56	50	0	0	50	1.00
14149176--14149202	10	2.7	10	100	0	54	62	0	7	29	1.22
14155364--14155408	17	2.6	16	83	13	54	75	0	20	4	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84