genome.fa.s157.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  43  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10090902--10091197	117	2.5	117	88	3	429	43	6	13	36	1.70
10093876--10093915	16	2.4	17	87	8	55	55	2	5	37	1.35
10100747--10100797	25	2.1	24	82	10	59	72	15	0	11	1.12
10100772--10100831	18	3.3	17	77	13	57	71	16	0	11	1.14
10102563--10102596	14	2.5	14	90	4	52	82	5	2	8	0.93
10102570--10102596	14	1.9	14	100	0	54	81	7	0	11	0.87
10104320--10104380	31	2.0	31	83	6	79	49	1	1	47	1.21
10104201--10104570	191	1.9	192	90	2	593	45	5	2	46	1.41
10105684--10105716	6	5.5	6	96	0	57	21	0	0	78	0.75
10105857--10105918	28	2.2	28	82	5	72	17	8	4	69	1.31
10106182--10106206	10	2.5	10	100	0	50	16	0	24	60	1.36
10106713--10106853	5	26.2	5	69	24	67	19	4	3	72	1.17
10106698--10106736	20	2.1	18	86	13	53	15	0	2	82	0.79
10106760--10106853	11	8.7	10	72	22	66	18	5	2	74	1.11
10106745--10106863	17	7.5	16	70	21	72	19	5	1	73	1.13
10106872--10107149	59	4.7	58	88	5	382	46	6	12	34	1.68
10106872--10107149	117	2.4	116	87	7	400	46	6	12	34	1.68
10115532--10115620	8	10.6	8	82	14	101	75	0	13	11	1.05
10115531--10115620	17	5.2	17	76	17	78	75	0	13	11	1.05
10115561--10115620	7	7.7	7	92	5	57	75	0	15	10	1.05
10116070--10116142	33	2.2	33	100	0	146	46	10	9	32	1.71
10116655--10117033	41	9.2	41	91	0	578	23	14	21	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10118392--10118433	16	2.6	16	100	0	84	19	0	4	76	0.96
10118391--10118433	4	10.8	4	89	0	68	20	0	4	74	1.00
10118457--10118515	11	5.5	11	78	9	52	16	5	1	76	1.05
10118457--10118550	5	18.4	5	74	22	72	15	5	2	76	1.06
10118457--10118560	17	5.9	16	76	13	82	16	5	1	75	1.08
10118570--10119017	60	7.7	58	87	6	606	46	6	11	35	1.65
10118750--10118843	27	3.3	27	65	21	73	41	7	14	36	1.75
10119802--10119844	20	2.1	21	86	4	61	32	4	27	34	1.78
10120505--10120569	34	1.9	33	84	3	85	43	9	6	41	1.61
10123878--10124214	41	8.1	42	89	3	429	23	16	23	37	1.94
10124393--10124491	9	10.8	9	74	10	67	20	2	2	75	1.00
10124398--10124493	6	16.2	6	72	14	56	20	2	2	75	1.02
10124402--10124480	20	3.9	19	73	12	52	22	2	2	72	1.09
10124451--10124488	19	2.0	20	89	5	60	18	0	2	78	0.86
10124585--10124633	20	2.3	21	86	6	64	22	6	8	63	1.44
10125495--10125527	4	8.8	4	87	12	52	24	0	0	75	0.80
10125551--10125644	5	17.4	5	77	18	75	18	5	1	75	1.05
10125550--10125658	17	6.2	17	77	13	98	17	5	0	76	1.03
10125550--10125636	6	14.7	6	71	20	67	18	5	0	75	0.99
10125551--10125644	11	8.7	10	75	20	75	18	5	1	75	1.05
10125551--10125658	42	2.6	41	81	14	123	17	5	0	75	1.04
10125663--10126115	117	3.9	116	87	4	642	46	6	11	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10125664--10126115	59	7.7	58	87	5	615	46	6	11	35	1.65
10125663--10126115	116	3.9	116	85	6	617	46	6	11	35	1.65
10126904--10126942	19	2.0	20	90	5	62	33	5	25	35	1.78
10132717--10132764	22	2.2	22	84	0	60	50	2	2	45	1.25
10137860--10137915	24	2.3	24	87	0	76	53	3	3	39	1.36
10137922--10137972	23	2.4	20	83	9	66	43	0	1	54	1.11
10138552--10138589	15	2.7	15	88	8	53	60	5	0	34	1.19
10141204--10141248	23	2.0	22	86	4	63	37	0	0	62	0.96
10141507--10141557	16	3.2	17	78	15	56	52	1	0	45	1.12
10141495--10141546	22	2.3	23	76	3	61	55	1	0	42	1.10
10152264--10152299	15	2.5	14	86	8	54	63	0	22	13	1.29
10169414--10169438	13	1.9	13	100	0	50	8	12	8	72	1.29
10170197--10170242	20	2.3	20	84	0	65	30	0	0	69	0.89
10170219--10170251	11	3.1	11	86	4	50	30	0	0	69	0.88
10170212--10170270	12	5.0	11	80	15	57	33	0	0	66	0.92
10172326--10172391	21	3.1	21	86	6	89	53	0	4	42	1.21
10172339--10172384	18	2.6	17	86	6	56	52	0	2	45	1.13
10174007--10174038	16	2.0	16	93	0	55	21	3	0	75	0.95
10175282--10175334	26	2.0	26	88	0	79	41	13	5	39	1.68
10187175--10187240	19	3.5	18	68	15	53	54	10	4	30	1.54
10187487--10187568	16	5.0	16	70	20	62	35	6	3	54	1.43
10187741--10187771	16	1.9	16	93	0	53	51	6	0	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10188439--10188755	160	2.0	160	98	0	607	41	5	8	44	1.57
10189623--10189726	40	2.6	41	75	13	117	55	0	1	41	1.17
10189913--10190081	93	1.8	89	81	10	207	53	3	4	38	1.39
10196182--10196226	2	22.5	2	100	0	90	51	0	0	48	1.00
10205031--10205125	27	3.5	27	75	11	95	22	4	38	34	1.73
10218730--10218799	35	2.0	35	94	0	122	28	17	17	37	1.92
10221535--10221576	21	2.0	21	95	0	75	33	26	4	35	1.77
10221963--10222063	49	2.1	49	92	0	166	52	13	17	15	1.75
10228397--10228435	15	2.6	16	80	16	55	51	0	7	41	1.31
10238270--10238404	21	6.6	21	68	14	59	36	0	9	54	1.34
10238730--10238962	22	10.6	22	72	4	157	38	5	7	48	1.53
10238710--10239201	44	11.0	44	69	12	218	37	6	6	49	1.54
10238713--10238966	88	2.9	88	79	8	248	38	5	7	49	1.53
10238914--10239018	52	2.0	52	81	7	124	38	7	6	47	1.58
10238995--10239087	22	4.2	22	74	8	73	35	10	6	47	1.64
10238828--10239090	140	1.9	140	80	7	311	37	7	6	47	1.59
10239056--10239115	22	2.7	23	80	14	72	30	3	5	61	1.33
10239131--10239201	22	3.3	22	84	7	92	38	5	2	53	1.39
10239255--10239312	20	2.8	20	76	16	55	34	3	3	58	1.32
10239986--10240118	22	6.1	21	76	11	92	36	3	9	49	1.54
10239993--10240123	65	2.0	65	82	8	160	37	4	9	48	1.57
10239988--10240118	43	3.0	42	72	10	113	36	3	9	49	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10239999--10240139	65	2.2	64	78	5	140	39	4	9	46	1.57
10240143--10240229	22	4.0	22	80	3	68	36	9	6	47	1.62
10240182--10240262	41	2.0	41	85	4	110	34	8	9	46	1.68
10240375--10240416	22	2.0	21	86	13	59	40	0	4	54	1.21
10240486--10240530	22	2.0	22	82	0	54	40	6	2	51	1.41
10240575--10240657	22	3.8	22	83	3	96	40	4	4	49	1.45
10240581--10240637	11	5.2	11	78	0	60	40	3	3	52	1.35
10240575--10240659	44	1.9	44	87	0	125	41	5	4	48	1.48
10241449--10241717	147	1.8	148	86	2	389	37	13	8	40	1.74
10243066--10243488	211	2.0	210	99	0	837	41	8	7	42	1.64
10246337--10246379	20	2.1	21	95	4	79	53	11	9	25	1.67
10248180--10248209	15	2.0	15	93	0	51	70	3	26	0	1.03
10256752--10256778	6	4.5	6	100	0	54	62	0	0	37	0.95
10258915--10258972	22	2.5	24	83	10	77	46	0	0	53	1.00
10259785--10259836	22	2.4	23	78	12	65	36	0	1	61	1.07
10259847--10259881	16	2.2	16	89	0	52	48	0	2	48	1.16
10260904--10260948	14	3.3	14	79	14	58	42	0	0	57	0.98
10260906--10260946	15	2.9	14	77	22	50	41	0	0	58	0.98
10274200--10274225	12	2.2	12	100	0	52	42	7	34	15	1.75
10277730--10277881	11	13.7	11	67	6	74	50	3	5	40	1.45
10277728--10277892	22	7.5	22	75	7	111	49	4	6	40	1.49
10277801--10277855	23	2.5	22	82	8	58	49	3	7	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10279942--10279985	2	22.0	2	95	0	79	47	2	0	50	1.13
10280986--10281011	2	13.0	2	100	0	52	0	50	0	50	1.00
10282457--10282499	19	2.3	19	92	8	70	32	0	2	65	1.06
10287481--10287510	9	3.2	9	95	4	51	63	0	0	36	0.95
10287483--10287512	10	3.1	10	95	4	53	63	0	0	36	0.95
10292891--10292916	13	2.0	13	100	0	52	0	7	0	92	0.39
10308944--10309066	61	2.0	61	98	0	237	41	13	25	20	1.88
10313176--10313254	19	4.0	19	78	14	63	54	0	1	44	1.08
10313844--10313871	3	9.3	3	100	0	56	64	0	35	0	0.94
10314498--10314523	3	8.7	3	100	0	52	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84