genome.fa.s157.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  5  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424446--424502	29	2.0	29	82	0	69	71	5	0	22	1.05
424982--425024	21	2.1	20	82	4	50	60	23	2	13	1.45
425382--425586	5	39.4	5	70	11	108	53	7	2	35	1.45
425853--426155	56	5.4	56	73	4	189	38	15	23	22	1.92
425957--426222	112	2.4	110	76	6	257	38	14	23	23	1.91
436830--436862	4	8.2	4	100	0	66	75	0	0	24	0.80
437566--437606	9	4.5	10	90	9	54	26	0	7	65	1.18
438297--438342	20	2.3	20	85	3	58	26	30	17	26	1.97
438797--439179	57	6.6	57	81	12	428	46	7	13	32	1.71
442984--443026	9	4.7	9	81	16	52	88	0	9	2	0.60
442984--443025	18	2.3	18	88	8	59	88	0	9	2	0.61
442984--443026	10	4.3	10	90	0	68	88	0	9	2	0.60
442984--443034	20	2.5	20	87	0	75	84	0	11	3	0.75
442991--443042	10	5.5	10	80	11	56	84	0	9	5	0.77
442984--443052	15	4.4	16	72	18	56	82	0	11	5	0.83
444295--444419	40	3.1	41	91	3	218	22	16	19	42	1.89
444414--444470	19	2.9	20	84	5	80	24	28	19	28	1.98
444911--445318	59	6.9	58	86	9	565	44	8	12	33	1.73
445046--445135	27	3.2	27	65	20	76	41	6	14	37	1.72
446138--446205	23	2.8	24	82	15	86	72	1	2	23	1.07
446141--446210	29	2.4	29	81	13	81	72	1	2	22	1.05
446161--446210	16	3.3	15	78	16	50	74	0	2	24	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446166--446213	19	2.5	19	79	3	60	75	0	2	22	0.91
447084--447200	5	22.0	5	80	7	99	58	0	5	35	1.26
447083--447146	3	23.7	3	73	20	61	60	0	3	35	1.12
447196--447261	15	4.4	15	76	0	60	46	13	3	36	1.59
447231--447284	15	4.0	14	75	22	53	55	11	0	33	1.35
447240--447321	25	3.2	25	73	18	64	57	7	1	34	1.34
447238--447311	25	3.0	25	82	4	87	55	9	1	33	1.41
448048--448341	62	4.8	62	78	9	291	34	12	16	36	1.86
449790--449966	61	2.9	61	75	7	162	36	14	16	32	1.89
449790--449905	60	1.9	61	82	5	146	34	18	15	31	1.92
455340--455498	52	3.0	52	86	3	194	39	9	24	26	1.86
455365--455498	53	2.5	52	87	3	178	37	8	26	28	1.85
455982--456125	31	4.7	30	85	5	189	29	19	24	27	1.98
455982--456125	62	2.3	62	90	2	218	29	19	24	27	1.98
456145--456224	25	3.2	25	83	0	97	36	6	36	21	1.79
456511--456667	52	3.0	52	86	3	201	40	9	24	25	1.85
458233--458267	14	2.6	14	86	4	54	34	0	5	60	1.21
460601--460633	2	16.5	2	93	0	57	48	0	0	51	1.00
461091--461135	23	2.0	23	86	0	63	75	2	0	22	0.91
462103--462149	22	2.1	21	81	14	51	48	8	4	38	1.53
462360--462489	68	2.0	65	89	4	197	42	10	6	40	1.67
463882--463912	14	2.2	14	94	0	53	58	3	0	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463906--463941	13	2.8	12	88	12	54	77	0	2	19	0.88
474461--475063	61	10.2	57	77	10	488	35	11	6	47	1.65
475141--475173	4	8.5	4	93	6	59	72	0	0	27	0.85
475141--475182	12	3.6	12	87	3	59	69	0	2	28	1.01
476243--476723	85	5.7	84	77	9	320	46	16	16	20	1.84
476278--476775	170	2.9	170	79	6	438	47	16	16	20	1.83
476309--476775	85	5.5	86	77	7	398	47	16	16	19	1.83
477647--477744	46	2.2	46	86	1	144	21	14	12	52	1.74
477692--477796	54	2.0	54	86	1	149	20	14	9	55	1.67
479874--479908	17	2.1	17	88	0	52	74	0	2	22	0.95
480696--480839	27	5.5	27	75	14	115	64	2	4	28	1.26
480696--480841	54	2.8	54	78	13	151	65	2	4	28	1.25
480785--480832	10	4.9	10	76	2	53	66	0	2	31	1.03
481024--481284	43	6.0	43	77	13	187	42	19	15	21	1.88
481023--481193	43	3.9	44	80	11	190	42	21	15	20	1.89
481023--481219	88	2.3	87	81	11	217	42	20	15	21	1.88
481023--481284	131	2.0	133	80	8	293	42	20	15	21	1.88
489451--489485	15	2.3	15	85	0	52	48	0	22	28	1.51
492676--492907	62	3.9	61	85	9	309	31	10	6	50	1.62
493730--493788	10	5.8	10	72	18	50	66	1	3	28	1.18
493716--493834	27	4.4	28	81	9	124	63	2	5	29	1.29
502625--503140	60	8.8	58	79	9	430	34	13	6	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502701--503140	117	3.7	116	78	9	419	35	13	6	45	1.69
502625--503220	59	10.1	57	78	8	465	35	12	6	45	1.67
503240--503280	22	1.9	21	85	5	55	53	4	2	39	1.35
504779--504905	56	2.3	56	80	2	148	26	28	11	33	1.90
505314--505418	5	21.6	5	76	13	103	38	1	2	57	1.25
505321--505474	3	55.3	3	70	19	84	35	2	3	58	1.28
505314--505418	47	2.3	45	85	9	133	38	1	2	57	1.25
505425--505470	17	2.7	17	86	6	58	30	2	2	65	1.16
506889--507053	74	2.2	75	85	1	233	35	17	12	35	1.87
507317--507370	23	2.4	23	81	3	65	44	16	11	27	1.82
508685--508725	16	2.5	17	84	11	59	12	12	0	75	1.05
512647--512904	132	2.0	129	89	2	399	32	12	7	47	1.70
512665--512947	132	2.2	130	86	4	349	33	13	7	45	1.71
515980--516041	30	2.1	30	100	0	124	29	24	6	40	1.80
517380--517417	2	19.0	2	88	0	58	50	5	0	44	1.24
519414--519909	243	2.0	243	80	5	545	36	13	13	36	1.84
520244--520312	35	2.0	34	88	2	102	34	8	17	39	1.80
523476--523604	25	5.2	25	80	3	116	42	27	7	21	1.80
523509--523611	12	8.3	12	71	14	66	43	27	6	22	1.78
524114--524241	62	2.1	60	84	8	161	40	11	14	33	1.82
524211--524525	63	5.1	63	65	20	178	38	13	13	34	1.83
524205--524598	124	3.2	123	86	1	545	38	13	13	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524453--524896	185	2.4	185	85	4	599	39	12	14	33	1.84
524756--524985	62	3.7	61	73	14	202	39	11	14	34	1.82
524760--525028	125	2.1	125	86	2	378	39	10	14	35	1.81
524143--525214	311	3.5	308	75	9	1027	39	12	13	34	1.82
524766--525109	125	2.8	125	82	5	360	40	11	13	34	1.80
534700--534736	2	18.5	2	100	0	74	51	0	0	48	1.00
539475--539521	10	4.7	10	86	7	60	10	19	0	70	1.16
539935--539984	19	2.6	19	84	6	57	46	2	2	50	1.24
539916--539989	23	3.2	23	74	12	71	44	1	1	52	1.17
539960--540001	19	2.1	19	86	8	57	52	0	2	45	1.13
543726--543773	3	16.0	3	100	0	96	66	0	0	33	0.92
545689--545752	31	2.1	31	87	0	92	39	9	29	21	1.85
553058--553100	21	2.0	22	90	4	70	18	13	0	67	1.23
553255--553287	16	2.1	16	88	5	50	27	3	0	69	1.03
553581--553636	29	2.0	28	82	3	67	46	3	1	48	1.30
562169--562212	22	2.0	22	90	0	70	34	11	9	45	1.72
568402--568438	16	2.3	16	100	0	74	43	18	0	37	1.51
572666--572713	23	2.1	23	100	0	96	45	14	4	35	1.64
573000--573036	18	2.1	18	95	5	67	54	0	0	45	1.00
579984--580053	23	3.1	23	89	4	115	31	10	28	30	1.89
589582--589626	23	2.0	23	100	0	90	31	31	8	28	1.88
590341--590370	15	2.0	15	100	0	60	6	46	0	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605384--605446	25	2.5	25	97	0	117	31	25	11	31	1.91
614107--614173	17	4.0	16	75	14	55	8	23	0	67	1.19
617539--617571	2	16.5	2	93	0	57	54	0	0	45	0.99
623212--623241	2	15.5	2	93	6	53	50	0	0	50	1.00
623592--623618	1	27.0	1	100	0	54	0	0	0	100	0.00
624536--624581	14	3.6	12	80	13	56	30	2	2	65	1.16
624555--624585	16	1.9	16	93	0	53	35	0	0	64	0.94
625761--625806	14	3.6	13	91	8	69	71	0	0	28	0.86
625760--625806	24	2.0	23	95	4	85	70	0	0	29	0.88
625760--625806	3	16.0	3	87	12	71	70	0	0	29	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84