genome.fa.s157.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  75  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16225818--16225861	20	2.2	20	91	0	70	36	15	11	36	1.84
16238720--16238784	22	2.9	22	78	15	71	55	0	0	44	0.99
16238716--16238824	23	5.0	22	72	20	86	53	0	0	45	1.06
16238724--16238824	45	2.3	43	83	12	120	54	0	0	44	1.06
16239033--16239074	18	2.3	18	80	15	50	69	4	2	23	1.20
16241429--16241462	9	3.9	9	88	7	52	79	0	2	17	0.86
16241429--16241461	17	1.9	17	93	0	57	78	0	3	18	0.87
16244608--16244665	27	2.2	26	84	3	71	29	10	6	53	1.61
16246185--16246232	18	2.6	19	81	15	57	43	8	0	47	1.33
16247570--16247751	100	1.8	101	90	3	296	42	9	9	37	1.70
16259838--16259862	13	1.9	13	100	0	50	12	0	8	80	0.92
16264040--16264094	22	2.7	20	73	13	58	69	0	5	25	1.10
16269304--16269358	28	1.9	29	85	3	76	54	3	0	41	1.18
16273217--16273260	14	3.2	13	79	17	52	20	2	4	72	1.13
16273978--16274065	44	2.0	45	88	6	135	21	5	12	60	1.53
16277964--16278012	7	7.1	7	82	13	57	81	0	18	0	0.69
16277960--16278009	22	2.3	22	76	20	59	80	0	20	0	0.72
16277944--16278012	13	5.2	12	75	14	57	79	1	17	1	0.88
16279242--16279348	40	2.7	40	80	1	126	32	14	15	36	1.89
16284869--16284925	27	2.1	27	83	6	71	42	7	3	47	1.47
16285758--16285832	4	19.5	4	78	8	66	44	4	4	48	1.40
16285769--16285830	21	3.0	21	85	0	70	43	3	4	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16285758--16285832	25	3.2	25	81	10	79	44	4	4	48	1.40
16287956--16288024	32	2.2	32	89	0	102	46	7	17	28	1.75
16288061--16288206	65	2.3	64	79	10	165	45	11	10	32	1.74
16292743--16292785	17	2.5	17	76	0	50	48	2	6	41	1.43
16296080--16296116	16	2.3	16	90	0	56	62	16	0	21	1.33
16300417--16300442	2	13.0	2	100	0	52	50	0	50	0	1.00
16301651--16301692	22	1.9	22	90	0	66	33	11	9	45	1.73
16301897--16301969	25	2.8	25	82	12	78	20	26	12	41	1.87
16305478--16305513	14	2.6	14	95	4	65	41	13	8	36	1.75
16305606--16305647	22	1.9	22	90	0	66	33	11	9	45	1.73
16305964--16306007	20	2.2	20	91	0	70	36	15	11	36	1.84
16319056--16319129	24	3.0	25	77	11	82	47	0	2	50	1.15
16319386--16319427	18	2.3	18	80	15	50	69	4	0	26	1.08
16321782--16321824	15	2.9	14	79	6	50	81	0	2	16	0.79
16322444--16322482	15	2.5	15	83	4	51	79	5	7	7	1.05
16324100--16324166	8	8.8	8	74	9	59	53	20	0	25	1.46
16324949--16325007	27	2.2	27	78	0	64	27	10	8	54	1.63
16326511--16326558	18	2.6	19	75	24	57	45	8	0	45	1.33
16326806--16326843	20	1.9	20	88	0	58	44	2	2	50	1.30
16327717--16327754	20	1.9	20	84	10	51	26	2	5	65	1.27
16327891--16328070	98	1.8	98	89	4	283	40	11	10	38	1.74
16348567--16348615	13	4.0	12	81	10	55	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16349055--16349096	17	2.3	19	84	8	52	59	2	0	38	1.10
16349165--16349254	28	3.2	28	73	14	103	51	0	7	41	1.31
16349171--16349269	29	3.4	28	72	15	94	52	0	7	40	1.29
16349166--16349283	57	2.2	53	92	6	191	52	0	6	40	1.28
16353039--16353070	15	2.1	15	94	0	55	40	3	18	37	1.67
16354433--16355122	56	12.1	57	84	7	714	50	4	8	35	1.55
16354433--16355122	114	6.0	113	83	6	761	50	4	8	35	1.55
16355104--16355149	25	1.9	24	86	8	67	45	2	2	50	1.26
16360084--16360124	17	2.5	17	88	4	57	73	4	4	17	1.19
16361282--16361306	2	12.5	2	100	0	50	48	0	0	52	1.00
16362672--16362742	18	3.9	18	81	0	88	28	5	35	30	1.80
16362640--16362741	51	1.9	52	82	5	125	30	4	32	32	1.79
16363233--16363264	17	1.9	17	93	6	57	12	15	3	68	1.32
16364873--16365009	52	2.7	52	79	5	136	35	8	19	36	1.83
16364873--16365019	51	2.9	51	80	5	163	36	9	18	36	1.83
16365514--16365565	14	3.6	14	82	12	52	15	1	5	76	1.05
16365519--16365566	23	2.0	24	88	4	71	18	2	4	75	1.07
16366504--16366545	15	2.8	15	85	7	50	7	11	2	78	1.04
16369657--16369699	22	1.9	22	95	4	77	88	6	4	0	0.63
16369657--16369712	12	4.5	12	79	16	60	85	7	3	3	0.81
16370603--16370833	115	2.0	115	84	1	302	22	23	12	41	1.88
16370620--16370905	115	2.5	113	78	8	299	23	24	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16371231--16371274	18	2.5	17	85	3	61	34	22	13	29	1.93
16375583--16375624	20	2.0	21	86	13	61	19	21	19	40	1.92
16378977--16379235	57	4.6	55	79	11	224	49	4	9	37	1.54
16379000--16379216	55	3.9	54	83	7	220	50	4	9	35	1.53
16379156--16379188	13	2.5	13	95	0	57	69	3	3	24	1.16
16379048--16379275	55	4.0	57	78	11	186	50	4	9	35	1.56
16382643--16382716	18	4.1	18	73	0	76	29	5	31	33	1.80
16384806--16384953	51	2.9	51	81	3	181	35	8	18	37	1.81
16385439--16385478	18	2.2	18	86	13	55	15	5	2	77	1.04
16385444--16385497	14	3.7	14	83	14	65	16	1	3	77	1.00
16385444--16385497	5	11.0	5	74	18	51	16	1	3	77	1.00
16389512--16389553	20	2.0	21	86	13	61	19	19	19	42	1.89
16394285--16394597	57	5.6	55	79	11	291	51	4	8	35	1.52
16394295--16394635	56	6.0	54	74	17	225	53	4	8	33	1.53
16398695--16398727	17	1.9	17	93	0	57	12	18	0	69	1.18
16400278--16400423	51	2.8	51	83	5	179	36	9	18	35	1.84
16400918--16400969	14	3.6	14	86	2	68	13	1	3	80	0.93
16400924--16400969	23	2.0	24	87	12	69	13	2	2	82	0.85
16404718--16404757	19	2.0	20	85	4	55	72	0	15	12	1.12
16405051--16405112	1	62.0	1	75	0	52	87	3	8	1	0.72
16405043--16405116	8	8.1	9	77	18	73	85	2	9	2	0.80
16407782--16407819	15	2.5	15	91	8	60	13	5	2	78	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16413669--16413725	23	2.6	23	81	10	66	61	0	0	38	0.96
16413674--16413724	11	4.3	12	79	18	54	66	0	0	33	0.92
16414155--16414211	23	2.6	23	71	15	57	52	1	0	45	1.11
16418081--16418112	15	2.1	15	94	0	55	40	3	18	37	1.67
16419727--16419811	24	3.1	27	66	17	77	44	3	10	41	1.56
16419474--16420107	56	11.1	56	82	7	647	50	4	8	35	1.54
16425164--16425204	17	2.5	17	88	4	57	73	4	4	17	1.19
16426363--16426391	2	14.5	2	100	0	58	48	0	0	51	1.00
16427765--16427808	18	2.4	18	92	0	70	25	6	34	34	1.82
16427733--16427834	51	1.9	52	82	5	125	30	4	30	34	1.79
16428327--16428358	16	1.9	17	93	6	57	9	12	3	75	1.16
16429967--16430113	51	2.9	51	76	5	136	36	8	18	37	1.81
16430597--16430640	18	2.4	18	85	14	56	15	4	2	77	1.04
16430606--16430659	14	3.7	14	83	14	65	16	1	3	77	1.00
16430606--16430659	5	11.0	5	74	18	51	16	1	3	77	1.00
16434431--16434472	19	2.2	20	86	4	59	71	0	14	14	1.15
16440665--16440706	20	2.0	21	86	13	61	19	21	19	40	1.92
16445445--16445786	55	6.1	55	77	12	259	52	5	8	33	1.55
16445835--16445870	18	1.9	19	88	5	56	30	5	5	58	1.44
16449305--16449375	18	3.9	18	79	0	79	28	5	33	32	1.80
16449273--16449374	51	1.9	52	84	5	134	32	4	30	32	1.79
16449866--16449897	17	1.9	17	93	6	57	12	15	3	68	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16451490--16451647	52	3.1	51	76	9	140	39	8	17	34	1.80
16451500--16451646	51	2.9	51	82	3	161	38	9	17	34	1.83
16452132--16452189	19	3.1	18	83	14	57	17	3	1	77	0.99
16452146--16452189	9	4.8	9	86	10	54	18	2	0	79	0.83
16452137--16452189	14	3.7	14	80	19	65	18	1	1	77	0.96
16452137--16452189	5	11.0	5	77	18	51	18	1	1	77	0.96
16452146--16452211	13	5.0	13	75	17	57	19	4	1	74	1.07
16455928--16455966	20	2.0	20	85	10	53	79	0	7	12	0.93
16457815--16457859	18	2.6	17	85	3	63	33	22	13	31	1.92
16458311--16458457	51	2.8	52	80	4	163	38	9	17	34	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84