genome.fa.s157.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  83  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17866307--17866371	12	5.4	12	88	0	94	3	33	15	47	1.61
17867919--17867950	1	32.0	1	100	0	64	100	0	0	0	0.00
17873618--17873650	16	2.1	16	88	5	50	54	0	3	42	1.15
17873716--17873745	15	2.0	15	93	0	51	50	0	0	50	1.00
17882922--17882948	3	9.0	3	100	0	54	33	0	0	66	0.92
17887272--17887298	14	1.9	14	100	0	54	59	7	18	14	1.58
17887294--17887392	51	1.9	51	83	0	126	49	7	11	32	1.65
17890158--17890198	21	1.9	22	85	5	57	46	2	0	51	1.14
17892057--17892140	19	4.3	20	75	13	68	52	3	0	44	1.18
17892057--17892151	19	4.9	19	79	14	61	53	3	2	41	1.28
17892630--17892691	28	2.3	25	79	17	63	40	1	4	53	1.32
17892667--17892794	55	2.3	55	97	0	238	38	6	8	46	1.60
17892824--17892848	13	1.9	13	100	0	50	56	0	0	44	0.99
17892856--17892882	13	2.1	13	100	0	54	66	0	0	33	0.92
17893608--17893653	22	2.1	22	84	8	58	47	2	0	50	1.13
17896697--17896752	23	2.4	24	84	3	69	33	5	1	58	1.31
17896719--17896820	39	2.6	37	77	10	105	42	1	0	55	1.11
17896856--17896906	24	2.1	24	85	0	66	52	1	3	41	1.31
17898666--17898702	4	9.2	4	93	0	56	75	5	0	18	0.99
17899289--17899347	24	2.5	22	81	13	57	72	6	1	18	1.15
17899605--17899893	43	6.6	43	75	7	226	46	17	11	24	1.82
17899615--17899893	87	3.2	86	81	5	312	46	17	11	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17899611--17899893	130	2.2	129	80	5	302	45	17	12	24	1.82
17900412--17900463	18	2.9	18	85	0	68	44	0	0	55	0.99
17900349--17900451	41	2.6	38	76	8	100	40	1	0	57	1.10
17910601--17911023	84	5.1	84	82	6	459	17	30	10	41	1.83
17910935--17911541	294	2.1	294	97	0	1133	17	28	11	41	1.84
17913210--17913263	27	2.0	27	85	3	72	46	1	3	48	1.30
17913298--17913341	21	2.1	21	91	0	70	47	0	0	52	1.00
17913469--17913535	28	2.4	28	100	0	134	31	5	0	62	1.19
17913469--17913544	14	5.4	14	68	14	50	30	5	0	64	1.15
17913565--17913614	16	2.9	17	85	8	66	30	0	0	70	0.88
17913559--17913625	28	2.4	27	77	2	71	32	1	0	65	1.02
17913586--17913621	16	2.3	16	95	4	65	36	0	0	63	0.94
17914266--17914587	106	3.0	106	92	2	540	40	8	11	39	1.70
17924896--17924926	16	2.0	15	93	6	53	51	0	6	41	1.27
17926728--17926752	11	2.3	11	100	0	50	40	16	0	44	1.47
17927417--17927477	31	2.0	31	90	0	95	44	11	14	29	1.81
17928069--17928110	22	1.9	22	85	0	57	33	7	4	54	1.49
17929032--17929080	17	2.7	18	82	17	66	69	12	6	12	1.35
17929033--17929091	17	3.4	16	80	17	64	74	8	5	11	1.20
17930121--17930174	13	4.2	13	76	4	56	7	5	5	81	0.98
17930184--17930237	2	28.5	2	74	10	51	40	0	0	59	0.98
17930182--17930239	6	9.5	6	81	10	73	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17930182--17930239	18	3.2	19	85	7	84	37	0	0	62	0.96
17930446--17930483	17	2.2	18	85	4	51	31	2	10	55	1.48
17934429--17934462	10	3.3	10	95	4	59	88	0	11	0	0.52
17934429--17934462	11	3.2	11	91	4	52	88	0	11	0	0.52
17934487--17934606	37	3.2	37	89	0	186	38	12	12	36	1.81
17934817--17934878	24	2.7	22	80	11	79	85	1	6	6	0.80
17934821--17934870	14	3.7	14	76	17	61	86	2	6	6	0.79
17934820--17934893	15	4.7	15	72	21	55	83	2	8	5	0.88
17934817--17934893	10	7.4	10	77	11	66	84	2	7	5	0.85
17934822--17934870	13	3.8	13	76	17	57	85	2	6	6	0.80
17934817--17934870	25	2.2	25	90	3	83	87	1	5	5	0.74
17934817--17934893	23	3.5	21	75	22	61	84	2	7	5	0.85
17934817--17934878	11	5.5	11	79	12	63	85	1	6	6	0.80
17935975--17936006	16	2.0	16	93	0	55	46	6	3	43	1.44
17936106--17936184	23	3.5	22	69	8	61	39	10	6	44	1.64
17936054--17936179	44	2.8	44	79	11	132	37	10	8	43	1.70
17936383--17936416	17	2.0	17	88	0	50	35	17	14	32	1.91
17936476--17936514	16	2.4	17	91	4	62	38	20	5	35	1.75
17936648--17936716	35	2.0	35	91	0	111	37	21	10	30	1.87
17936654--17936721	18	3.8	18	73	11	59	38	19	11	30	1.87
17942564--17942690	67	1.9	67	88	0	191	49	13	17	19	1.79
17942703--17942894	103	1.9	103	84	2	260	46	8	24	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17942806--17942908	36	2.9	35	80	5	111	47	10	23	18	1.79
17943461--17943497	18	2.1	18	94	0	65	8	29	0	62	1.24
17944101--17944139	8	4.8	8	84	6	51	7	5	0	87	0.68
17951985--17952075	22	4.2	22	81	10	82	19	1	28	50	1.55
17951976--17952024	15	3.3	15	80	2	55	22	0	22	55	1.44
17953225--17953265	6	6.7	6	88	5	55	0	2	12	85	0.70
17953671--17953726	3	18.7	3	81	0	58	41	1	1	55	1.21
17959201--17959238	19	2.0	19	89	0	58	68	0	0	31	0.90
17959793--17959839	15	3.2	15	84	6	60	23	2	10	63	1.37
17959802--17959839	14	2.6	15	83	8	51	26	0	10	63	1.27
17959846--17959888	12	3.4	12	78	12	50	37	11	4	46	1.61
17959984--17962932	988	3.0	981	84	6	3643	40	11	8	39	1.71
17962272--17962335	25	2.5	26	77	10	69	51	4	1	42	1.32
17963061--17963132	10	7.2	10	79	6	65	62	5	0	31	1.18
17963061--17963152	10	9.5	10	74	11	59	61	5	0	32	1.18
17963070--17963189	9	12.7	9	70	17	57	60	4	0	34	1.21
17963317--17963400	33	2.5	34	81	14	104	53	3	3	39	1.36
17963455--17963488	17	2.0	17	94	0	59	73	0	0	26	0.83
17963506--17963573	34	2.0	33	83	11	84	64	4	0	30	1.13
17963573--17963636	20	3.3	19	79	12	60	34	1	6	57	1.33
17963595--17963638	19	2.2	20	92	4	72	34	0	6	59	1.24
17963781--17963816	17	2.2	17	90	9	58	36	2	0	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17964184--17964220	15	2.5	15	87	12	51	40	8	0	51	1.32
17966390--17966425	2	18.0	2	100	0	72	50	0	0	50	1.00
17967480--17967519	2	20.0	2	94	0	62	45	0	5	50	1.23
17969888--17969938	11	4.7	11	79	11	52	60	1	1	35	1.19
17969910--17969944	10	3.4	10	88	7	52	71	0	5	22	1.07
17970003--17970057	28	2.0	28	89	7	85	60	1	3	34	1.25
17970002--17970046	19	2.4	19	81	7	56	60	2	2	35	1.22
17972826--17972869	22	2.0	22	90	0	70	40	9	13	36	1.76
17974475--17974500	7	3.7	7	100	0	52	88	0	0	11	0.52
17975343--17975390	25	1.9	25	87	8	71	50	2	4	43	1.33
17975482--17975506	4	6.2	4	100	0	50	76	0	0	24	0.80
17975544--17975594	27	2.0	25	85	14	68	47	0	7	45	1.32
17975860--17975943	26	3.4	25	65	15	59	53	9	8	28	1.62
17975847--17975946	47	2.1	47	83	0	128	59	9	7	25	1.53
17982255--17982349	7	13.0	7	71	8	57	73	1	11	13	1.15
17982243--17982288	20	2.3	20	92	3	76	78	0	8	13	0.97
17982243--17982295	19	2.8	18	86	11	70	79	0	7	13	0.93
17982253--17982348	37	2.6	37	78	12	101	75	1	11	12	1.11
17982274--17982348	8	9.6	8	76	11	66	73	1	12	13	1.17
17983452--17983786	43	7.8	42	75	5	215	28	15	13	43	1.83
17983452--17983789	85	3.9	85	77	4	250	28	15	13	43	1.84
17983553--17983789	42	5.5	42	77	6	199	27	16	13	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17983673--17983808	44	3.1	42	78	11	139	27	13	15	42	1.85
17984257--17984294	20	2.0	20	89	5	60	28	7	13	50	1.69
17984826--17984881	24	2.3	24	84	6	69	42	1	7	48	1.41
17988382--17988423	15	2.9	15	85	3	50	50	14	9	26	1.73
17988265--17989054	396	2.0	396	87	2	1131	38	17	8	34	1.81
17993320--17993372	21	2.3	25	75	25	78	41	28	5	24	1.77
17993326--17993373	21	2.3	21	100	0	96	41	27	4	27	1.74
17997286--17997338	9	6.0	9	77	22	51	41	3	0	54	1.18
17997293--17997329	17	2.3	17	86	9	51	43	2	0	54	1.14
17998164--17998250	46	1.9	46	92	2	149	36	3	5	54	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84