genome.fa.s157.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  76  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16462150--16462191	20	2.0	21	86	13	61	19	19	19	42	1.89
16465541--16465730	55	3.4	55	83	9	224	49	6	9	34	1.61
16465541--16465731	56	3.4	54	82	9	197	49	6	9	34	1.60
16465541--16465758	112	1.9	112	81	9	266	49	5	9	35	1.60
16466681--16466721	17	2.5	17	88	4	57	73	4	4	17	1.19
16469297--16469367	18	3.9	18	77	0	70	29	4	33	32	1.77
16469842--16469873	17	1.9	17	93	6	57	12	18	0	68	1.20
16472067--16472106	18	2.2	18	86	13	55	15	5	2	77	1.04
16472072--16472116	14	3.1	14	81	15	56	17	2	4	75	1.07
16478933--16479236	56	5.4	55	78	7	290	51	4	8	35	1.53
16478933--16479244	57	5.6	56	77	8	287	51	4	8	34	1.53
16478932--16479274	111	3.0	109	80	11	293	51	4	8	34	1.54
16478933--16479274	56	6.0	53	76	13	177	51	4	8	34	1.54
16479323--16479356	17	1.9	18	88	5	52	32	5	5	55	1.48
16480214--16480259	22	2.1	22	83	0	56	58	0	2	39	1.10
16482786--16482825	18	2.2	18	90	0	62	25	5	37	32	1.77
16484915--16485061	51	2.9	51	78	3	134	36	8	17	37	1.81
16485556--16485607	14	3.6	14	86	2	68	13	1	3	80	0.93
16485562--16485607	23	2.0	24	87	12	69	13	2	2	82	0.85
16489711--16489758	12	3.9	12	80	2	60	85	8	0	6	0.74
16489712--16489758	21	2.1	23	92	7	80	87	6	0	6	0.68
16489749--16489798	25	2.0	25	88	7	75	80	2	16	2	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16491304--16491347	18	2.5	18	79	13	56	36	15	13	34	1.87
16492394--16492431	14	2.6	14	88	12	51	15	2	2	78	0.97
16502608--16502689	27	3.0	27	100	0	164	36	21	0	41	1.54
16505154--16505181	2	14.0	2	100	0	56	50	0	0	50	1.00
16505715--16505752	11	3.2	12	85	14	53	68	0	0	31	0.90
16505710--16505755	11	4.2	11	84	13	51	63	0	0	36	0.95
16507552--16507712	58	2.8	57	85	5	209	48	4	11	35	1.61
16510272--16510590	112	2.9	110	78	8	308	51	4	8	35	1.53
16510281--16510620	55	6.1	55	75	9	244	52	5	8	34	1.54
16510334--16510592	111	2.3	110	79	7	283	54	4	8	32	1.52
16514131--16514201	18	3.9	18	75	14	74	32	5	30	30	1.81
16516902--16516941	18	2.2	18	86	13	55	15	5	2	77	1.04
16516909--16516957	14	3.7	13	82	12	55	16	2	2	79	0.92
16516907--16516957	5	10.0	5	80	16	52	17	1	1	78	0.94
16517057--16517144	46	1.9	45	86	6	124	46	17	5	30	1.71
16517878--16517919	15	2.8	15	85	7	50	11	9	2	76	1.12
16520706--16520744	20	2.0	20	85	10	53	69	0	15	15	1.20
16523336--16523593	56	4.6	56	77	14	228	34	8	4	52	1.52
16524441--16525120	56	11.7	56	77	11	545	34	9	5	50	1.58
16524421--16524656	115	2.0	115	79	10	250	35	10	5	48	1.61
16524759--16524783	13	1.9	13	100	0	50	32	0	4	64	1.12
16524441--16525133	118	5.9	116	82	7	696	34	9	5	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16524504--16525133	174	3.6	172	79	8	630	34	9	5	51	1.56
16527840--16527896	23	2.6	23	71	15	57	45	0	1	52	1.11
16528328--16528377	25	2.0	26	84	4	66	30	0	2	68	1.01
16531394--16531475	27	3.0	27	100	0	164	41	0	21	36	1.54
16541607--16541658	20	2.6	21	79	17	65	69	3	11	15	1.32
16541629--16541665	14	2.5	15	83	16	51	78	2	5	13	1.03
16541629--16541666	15	2.6	14	88	12	51	76	2	5	15	1.08
16542169--16542316	51	2.9	50	78	9	138	35	16	10	37	1.84
16543200--16543432	115	2.0	115	79	1	252	42	14	22	20	1.88
16544310--16544370	26	2.4	27	78	13	76	1	11	3	83	0.83
16552406--16552461	27	2.1	27	100	0	112	35	23	0	41	1.55
16555339--16555391	11	4.3	12	80	17	56	69	0	0	30	0.88
16558652--16558683	15	2.1	15	94	0	55	40	3	18	37	1.67
16560051--16560616	56	9.9	55	78	9	460	49	6	9	34	1.61
16563275--16563528	55	4.6	56	82	9	290	51	3	9	35	1.53
16563269--16563608	57	6.0	56	79	9	320	51	5	8	34	1.55
16563268--16563570	55	5.4	55	80	8	285	51	5	8	35	1.55
16563258--16563608	111	3.1	109	80	11	363	50	5	8	35	1.56
16564520--16564560	17	2.5	17	88	4	57	73	4	4	17	1.19
16565715--16565741	2	13.5	2	100	0	54	48	0	0	51	1.00
16567141--16567211	18	3.9	18	77	0	70	28	4	33	33	1.77
16567702--16567733	17	1.9	17	93	6	57	12	15	3	68	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16569347--16569495	51	2.9	52	79	4	176	37	9	17	35	1.82
16573673--16573713	20	2.0	20	85	0	55	68	0	9	21	1.18
16573993--16574030	13	2.9	14	92	7	62	78	13	7	0	0.94
16573993--16574072	14	6.0	13	73	22	60	78	11	6	3	1.05
16574001--16574081	27	3.0	26	76	16	69	80	8	6	4	1.02
16575595--16575637	17	2.4	18	80	3	52	37	20	11	30	1.89
16575568--16575724	86	1.8	85	83	6	210	33	17	11	37	1.85
16576726--16576763	14	2.6	14	88	12	51	15	2	2	78	0.97
16586757--16586812	27	2.1	27	96	0	103	33	23	1	41	1.65
16587277--16587369	48	1.9	49	91	4	154	49	5	8	36	1.56
16591720--16591846	61	2.2	56	83	11	148	50	4	9	35	1.56
16594476--16594812	54	6.0	56	76	9	244	52	5	8	33	1.56
16594565--16594713	56	2.7	55	79	8	149	53	6	7	32	1.53
16594500--16594784	113	2.6	109	78	11	285	52	4	9	32	1.56
16594623--16594812	57	3.4	54	70	18	138	54	6	7	31	1.53
16595702--16595742	17	2.5	17	88	4	57	73	4	4	17	1.19
16596898--16596930	2	16.5	2	100	0	66	48	0	0	51	1.00
16598331--16598401	18	3.9	18	79	0	79	28	5	33	32	1.80
16598890--16598921	17	1.9	17	93	6	57	12	15	3	68	1.32
16600548--16600658	52	2.1	52	81	6	127	47	10	9	32	1.70
16601131--16601174	9	4.8	9	86	10	54	18	2	0	79	0.83
16601124--16601174	14	3.6	14	82	17	61	17	1	1	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16602115--16602154	15	2.7	14	88	7	53	10	7	5	77	1.11
16605285--16605335	22	2.3	23	86	3	68	76	11	7	3	1.13
16607382--16607528	51	2.9	51	79	5	154	37	9	16	36	1.81
16608019--16608068	20	2.6	19	84	9	57	14	4	4	78	1.05
16608031--16608068	14	2.6	14	88	12	51	15	2	2	78	0.97
16621655--16621711	23	2.6	23	71	15	57	52	1	0	45	1.11
16625615--16625646	15	2.1	15	94	0	55	40	3	18	37	1.67
16627033--16627650	56	10.7	56	80	9	506	50	5	9	34	1.57
16627033--16627650	114	5.4	114	80	8	607	50	5	9	34	1.57
16627628--16627676	24	2.1	24	92	3	82	44	4	0	51	1.20
16630262--16630401	54	2.5	53	85	10	174	49	4	9	37	1.55
16630272--16630554	56	5.1	55	77	12	247	52	6	7	33	1.55
16630272--16630554	112	2.5	112	81	9	321	52	6	7	33	1.55
16632229--16632253	2	12.5	2	100	0	50	48	0	0	52	1.00
16633636--16633680	18	2.4	18	74	3	54	31	4	33	31	1.78
16634200--16634231	17	1.9	17	93	6	57	12	18	0	68	1.20
16635841--16635991	51	2.9	52	81	3	180	38	9	17	34	1.82
16636472--16636528	18	3.1	18	82	12	55	17	3	1	77	1.00
16636486--16636529	22	2.0	22	86	8	63	20	2	0	77	0.88
16636484--16636522	12	3.0	13	88	7	53	20	2	0	76	0.90
16640312--16640350	20	2.0	20	85	10	53	69	0	17	12	1.19
16640635--16640673	14	2.8	14	80	0	51	82	5	5	7	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16640635--16640689	27	2.1	25	83	12	67	81	3	9	5	0.95
16641555--16641795	115	2.1	114	81	2	268	20	23	13	42	1.87
16642190--16642233	18	2.5	17	79	17	54	34	20	13	31	1.92
16642207--16642258	17	3.0	17	73	13	52	36	21	9	32	1.86
16643323--16643369	24	2.0	24	91	0	76	10	4	4	80	0.98
16645407--16645431	6	4.2	6	100	0	50	80	0	0	20	0.72
16653539--16653592	27	2.0	27	100	0	108	37	22	0	40	1.54
16654793--16654823	14	2.1	15	94	5	55	61	0	0	38	0.96
16655939--16655963	9	2.8	9	100	0	50	32	0	0	68	0.90
16656003--16656073	24	3.0	24	97	0	133	40	0	5	53	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84