genome.fa.s157.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  13  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2504931--2505002	35	2.1	35	94	0	126	31	12	19	36	1.89
2505578--2505718	42	3.4	41	83	3	165	42	19	14	23	1.88
2505694--2505742	24	2.0	24	88	0	71	34	28	14	22	1.93
2505612--2505826	107	2.0	108	87	0	306	38	22	14	24	1.91
2505718--2506084	42	9.0	41	83	6	417	40	20	14	24	1.89
2505720--2506084	83	4.5	77	79	10	322	40	20	14	24	1.90
2506535--2506587	20	2.6	21	90	3	81	33	15	5	45	1.69
2507741--2507819	8	9.4	8	75	13	61	7	13	0	78	0.95
2507743--2507830	18	4.9	19	74	21	68	7	15	0	76	1.01
2507754--2507827	26	2.8	26	80	15	91	9	14	0	75	1.03
2507741--2507830	44	2.1	42	84	12	112	7	15	0	76	1.00
2507752--2507830	9	8.9	9	78	13	74	8	16	0	74	1.05
2508184--2508231	24	2.0	24	83	0	60	10	22	0	66	1.22
2511302--2511346	21	2.1	21	84	8	56	60	8	4	26	1.46
2515999--2516032	16	2.1	17	88	5	52	29	0	5	64	1.17
2518697--2518757	30	2.0	30	93	0	104	39	16	6	37	1.75
2522629--2522680	25	2.0	26	85	10	72	32	0	1	65	1.04
2531126--2531166	3	13.7	3	100	0	82	31	0	0	68	0.90
2532197--2532248	21	2.5	20	75	12	50	75	7	1	15	1.12
2532363--2532403	14	3.0	14	80	13	50	73	0	2	24	0.96
2532366--2532405	20	2.0	20	90	5	62	72	0	2	25	0.97
2532365--2532405	11	4.0	11	81	12	52	73	0	2	24	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2544724--2544938	40	5.4	40	81	3	161	25	11	20	42	1.86
2544724--2544971	79	3.1	78	79	5	223	25	12	20	41	1.87
2544771--2544971	39	5.1	40	78	9	146	24	12	21	40	1.88
2546059--2546088	15	2.1	15	93	6	53	16	0	13	70	1.18
2546114--2546156	13	3.2	13	81	18	52	79	2	0	18	0.85
2546118--2546165	23	2.1	22	88	3	69	75	6	2	16	1.11
2546287--2546330	13	3.4	13	87	6	63	72	0	2	25	0.96
2549093--2549243	78	1.9	79	95	1	277	45	8	5	40	1.59
2550009--2550041	15	2.1	17	88	11	52	57	6	6	30	1.47
2549166--2550652	539	2.8	534	86	7	2033	40	6	8	44	1.60
2552173--2552448	148	1.9	148	83	0	365	43	7	13	35	1.72
2553135--2553195	22	2.8	22	71	14	54	49	4	11	34	1.61
2553317--2553396	22	3.7	22	77	3	72	43	2	11	42	1.53
2553431--2553473	22	2.0	22	86	9	61	51	2	9	37	1.47
2553528--2553614	22	4.0	21	74	15	61	49	11	5	33	1.63
2553838--2553909	33	2.2	33	84	0	99	44	9	5	40	1.61
2553873--2553985	22	5.2	22	78	8	99	48	13	3	34	1.59
2554003--2554044	22	1.9	22	95	0	75	40	2	11	45	1.54
2554004--2554053	22	2.3	22	85	0	64	44	4	12	40	1.60
2554365--2554616	22	11.7	22	68	18	77	46	5	9	38	1.59
2554427--2554464	20	2.0	20	89	5	60	44	0	13	42	1.43
2554550--2554583	16	2.2	15	94	5	59	52	5	5	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2554567--2554616	21	2.3	22	83	10	68	48	4	8	40	1.51
2554676--2554765	22	4.1	22	76	9	69	53	3	7	35	1.46
2554728--2554779	22	2.4	22	90	6	79	40	1	11	46	1.51
2554799--2554977	22	8.1	22	78	9	161	46	8	5	38	1.59
2554799--2554974	66	2.7	66	83	8	182	46	9	5	38	1.59
2554862--2555005	66	2.2	66	83	5	175	45	9	6	38	1.63
2554822--2555005	44	4.2	43	80	6	156	45	9	7	38	1.64
2555393--2555442	21	2.4	21	86	3	66	46	6	8	40	1.58
2556508--2556561	26	2.0	28	85	10	76	53	0	0	46	1.00
2556528--2556572	19	2.3	20	85	11	58	53	0	2	44	1.13
2556512--2556570	26	2.2	27	78	6	66	54	0	1	44	1.10
2565570--2565615	2	23.0	2	100	0	92	50	0	50	0	1.00
2570667--2570727	30	2.0	30	96	0	113	31	9	8	50	1.65
2572067--2572184	7	15.3	7	71	17	56	49	31	0	18	1.54
2572068--2572122	24	2.2	25	81	12	69	54	23	0	21	1.45
2572118--2572215	39	2.6	39	77	9	112	46	34	1	17	1.55
2572389--2572438	1	50.0	1	83	0	55	90	0	10	0	0.47
2572389--2572443	11	4.9	11	88	6	76	87	0	10	1	0.63
2572389--2572443	12	4.8	12	82	13	62	87	0	10	1	0.63
2572384--2572446	11	5.4	12	83	11	62	84	0	14	1	0.71
2572388--2572477	17	5.3	17	74	15	60	77	0	16	5	0.94
2572430--2572477	16	2.9	16	82	14	62	68	0	20	10	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2573627--2573901	25	11.6	24	73	14	182	36	8	16	37	1.80
2573653--2573877	92	2.4	92	90	0	333	37	8	16	37	1.80
2573653--2573875	46	4.8	46	87	0	302	37	8	16	37	1.80
2574327--2574676	42	8.2	41	80	6	313	25	11	18	44	1.83
2574326--2574676	83	4.1	82	78	7	342	25	11	18	44	1.83
2574504--2574599	49	2.0	49	89	0	147	28	11	19	40	1.86
2574374--2574702	174	1.9	176	84	2	448	25	11	19	43	1.84
2576081--2576121	11	3.5	11	83	9	55	65	0	2	31	1.05
2577143--2577207	23	2.7	23	85	4	76	47	35	0	16	1.47
2577146--2577253	39	2.8	40	87	2	148	50	30	0	18	1.47
2577163--2577252	16	5.7	15	75	18	85	51	31	0	17	1.46
2577163--2577252	23	3.8	23	74	18	71	51	31	0	17	1.46
2577389--2578371	497	2.0	496	90	1	1567	37	14	12	35	1.83
2578722--2578776	23	2.3	24	81	9	60	40	5	0	54	1.23
2583081--2583146	19	3.5	19	71	21	50	63	1	0	34	1.04
2583092--2583149	27	2.2	25	82	11	71	63	1	0	34	1.04
2583084--2583159	38	2.0	38	85	10	102	61	3	0	34	1.14
2586705--2586767	28	2.2	28	91	0	99	42	11	9	36	1.73
2588720--2588769	21	2.4	21	100	0	100	32	8	34	26	1.85
2588764--2588795	13	2.3	15	89	10	50	68	0	31	0	0.90
2596337--2596366	2	15.0	2	100	0	60	50	0	0	50	1.00
2599434--2599897	233	2.0	233	90	0	741	39	19	19	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2603690--2603724	15	2.2	16	90	5	54	62	0	0	37	0.95
2605386--2605418	16	2.0	17	94	5	59	30	0	0	69	0.88
2627511--2627606	28	3.5	27	71	14	81	41	4	0	54	1.20
2632675--2633096	60	7.1	60	81	7	448	40	9	5	44	1.60
2632675--2633076	59	6.7	58	83	7	439	39	10	4	45	1.60
2633098--2633127	7	4.4	7	91	8	53	86	0	0	13	0.57
2633093--2633127	13	2.8	12	91	4	52	85	0	0	14	0.59
2636708--2637198	59	8.1	57	76	12	421	39	10	6	43	1.65
2636835--2637030	68	3.0	67	71	19	198	39	9	7	43	1.66
2636903--2637198	119	2.5	116	86	6	393	38	10	6	44	1.65
2637264--2637311	16	3.0	16	88	11	64	81	0	2	16	0.79
2638207--2638266	12	4.7	13	80	19	65	35	0	0	65	0.93
2638212--2638267	22	2.5	22	77	5	60	35	0	0	64	0.94
2638225--2638263	16	2.4	16	82	0	51	35	0	0	64	0.94
2638528--2638683	24	6.6	23	70	20	72	70	1	5	23	1.14
2638576--2638659	30	2.7	30	75	14	73	72	1	5	20	1.12
2638620--2638675	28	2.0	27	86	10	78	73	0	1	25	0.93
2638620--2638681	26	2.3	26	86	8	81	74	0	1	24	0.91
2639041--2639099	27	2.3	26	82	11	68	62	1	0	35	1.05
2642542--2642585	3	14.7	3	85	0	61	59	0	0	40	0.98
2642591--2642639	17	3.0	17	79	11	57	65	0	0	34	0.93
2642598--2642640	16	2.7	16	82	7	52	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2642590--2642636	21	2.2	21	78	17	53	61	0	0	38	0.96
2643887--2643943	3	18.7	3	80	10	62	68	1	1	28	1.09
2644074--2644117	16	2.8	15	83	10	61	56	13	0	29	1.38
2650168--2650241	37	2.0	37	100	0	148	43	8	24	24	1.81
2652630--2652684	24	2.3	23	81	12	67	54	3	7	34	1.46
2675835--2675870	2	18.5	2	88	5	56	47	0	2	50	1.15
2679594--2679639	21	2.2	21	88	0	65	17	17	17	47	1.83
2679063--2680671	546	2.9	546	99	0	3155	36	19	14	29	1.92
2680140--2680185	21	2.2	21	88	0	65	17	17	17	47	1.83
2683149--2683194	16	2.8	17	77	12	51	41	0	4	54	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84