genome.fa.s157.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  20  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3995220--3995634	226	1.9	216	86	6	591	30	14	13	41	1.84
3999091--3999141	23	2.2	23	82	6	59	1	23	0	74	0.92
4002749--4002798	21	2.4	21	89	0	73	18	48	12	22	1.80
4004104--4004151	25	1.9	25	95	0	87	50	6	18	25	1.70
4038524--4038562	14	2.8	14	84	0	51	46	0	5	48	1.24
4040149--4040212	32	2.0	32	81	9	76	42	3	3	51	1.33
4040167--4040234	20	3.5	20	66	15	52	39	0	1	58	1.07
4040273--4040328	24	2.4	23	77	11	60	41	1	0	57	1.09
4040317--4040372	11	5.0	11	79	12	51	32	3	1	62	1.23
4040329--4040375	19	2.5	19	74	16	53	31	4	2	61	1.27
4047111--4047139	2	14.5	2	100	0	58	51	0	0	48	1.00
4047139--4047168	2	15.0	2	100	0	60	50	0	50	0	1.00
4049012--4049065	4	13.8	4	74	18	51	72	3	0	24	1.01
4049012--4049065	15	3.5	15	85	10	65	72	3	0	24	1.01
4052871--4052899	3	9.7	3	100	0	58	34	0	0	65	0.93
4074490--4074516	14	1.9	14	100	0	54	59	0	0	40	0.98
4077014--4077071	27	2.1	28	81	9	66	34	1	5	58	1.30
4077014--4077071	28	2.1	28	83	6	73	34	1	5	58	1.30
4085036--4085073	16	2.4	17	82	13	53	60	2	0	36	1.11
4085378--4085441	32	2.0	32	90	0	101	42	17	14	26	1.87
4087437--4087477	2	20.5	2	94	0	73	48	2	0	48	1.14
4090895--4090921	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4098747--4098787	20	2.0	20	85	0	55	41	19	12	26	1.87
4101897--4102031	70	1.9	69	81	13	159	18	5	3	71	1.21
4102596--4102650	25	2.2	26	93	3	94	47	0	5	47	1.25
4102922--4102956	17	2.1	17	94	0	61	40	0	8	51	1.33
4103766--4103800	17	2.1	17	89	10	54	37	2	8	51	1.47
4104231--4104264	15	2.2	16	89	5	52	61	0	0	38	0.96
4106173--4106233	28	2.2	28	82	5	70	49	1	3	45	1.28
4108142--4108190	25	1.9	25	83	4	62	65	2	8	24	1.31
4108493--4108524	2	16.0	2	100	0	64	50	0	0	50	1.00
4113795--4113841	21	2.2	22	92	3	78	40	0	0	59	0.97
4113796--4113848	21	2.7	20	82	11	65	39	0	1	58	1.09
4114108--4114202	46	2.1	46	97	0	181	56	10	11	21	1.64
4122430--4122469	20	2.1	19	85	4	53	45	5	10	40	1.60
4123289--4123348	21	2.9	21	77	5	59	51	1	16	30	1.54
4123731--4123759	13	2.1	14	93	6	51	41	0	0	58	0.98
4125040--4125091	11	5.0	11	80	15	58	36	0	0	63	0.95
4130490--4130531	16	2.6	16	85	7	50	2	19	16	61	1.44
4134685--4134925	119	2.0	119	95	0	437	32	14	24	28	1.94
4137131--4137161	2	15.5	2	100	0	62	51	0	0	48	1.00
4139002--4139242	123	1.9	124	83	5	308	40	16	14	27	1.88
4143717--4143761	10	4.4	10	77	5	54	62	8	2	26	1.37
4143851--4143917	9	7.6	9	73	21	52	64	7	1	26	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4143853--4143919	34	1.9	35	88	8	102	61	7	1	29	1.32
4144274--4144317	19	2.4	19	88	3	63	31	6	6	54	1.53
4144325--4144380	29	1.9	29	92	0	94	26	5	5	62	1.39
4144327--4144395	29	2.4	29	85	2	86	33	4	4	57	1.38
4144513--4144560	17	3.1	16	79	11	55	31	2	4	62	1.26
4144513--4144554	15	2.7	15	81	3	57	26	2	4	66	1.23
4144534--4144585	19	2.7	20	75	13	56	30	1	5	61	1.30
4144533--4144641	56	1.9	56	82	10	134	34	2	4	57	1.33
4151197--4151252	24	2.5	22	82	8	67	78	0	8	12	0.96
4152365--4152509	43	3.4	43	83	6	170	44	13	12	29	1.81
4159910--4159960	21	2.4	21	80	0	66	66	7	1	23	1.28
4161591--4161655	16	4.2	16	74	7	71	16	1	32	49	1.56
4161588--4161654	30	2.2	31	89	2	100	16	1	35	46	1.56
4162012--4162055	21	2.0	21	82	8	52	52	13	0	34	1.41
4171257--4171300	3	14.7	3	90	9	72	68	0	2	29	1.02
4171308--4171357	23	2.3	21	86	6	64	76	0	8	16	1.02
4171322--4171357	12	3.1	12	88	8	56	80	0	5	13	0.88
4172391--4172434	20	2.2	20	83	4	52	9	4	25	61	1.45
4172466--4172517	26	2.0	25	81	3	59	30	7	13	48	1.71
4173002--4173091	8	10.9	8	70	15	67	77	0	20	2	0.87
4173006--4173092	34	2.6	34	87	7	117	77	0	20	2	0.89
4173011--4173092	19	3.7	22	71	26	66	76	0	20	2	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4174275--4174314	18	2.2	17	91	8	62	82	0	12	5	0.82
4174942--4175040	24	4.2	24	80	7	121	32	3	9	55	1.47
4174948--4175086	24	6.8	20	66	26	69	30	3	10	55	1.50
4175024--4175086	32	2.0	32	90	0	99	26	4	11	57	1.53
4175090--4175153	31	2.1	31	81	0	74	26	4	15	53	1.62
4175025--4175240	55	3.8	55	73	12	170	29	4	11	54	1.56
4175185--4175225	20	2.0	22	90	9	68	36	4	7	51	1.51
4175228--4175500	56	4.8	56	68	20	176	28	2	11	57	1.46
4175347--4175415	32	2.2	32	89	0	102	31	4	11	52	1.57
4175418--4175509	24	3.4	26	69	19	73	27	1	11	59	1.39
4175408--4175485	32	2.4	32	81	10	88	29	0	12	57	1.36
4175613--4175700	19	4.8	18	74	13	63	34	4	11	50	1.59
4182457--4182499	22	2.0	22	81	9	52	32	27	11	27	1.92
4182862--4182886	13	1.9	13	100	0	50	24	24	12	40	1.88
4183057--4183186	68	1.9	69	88	1	199	30	13	15	40	1.86
4183124--4183361	85	2.8	84	84	6	291	30	11	17	40	1.84
4183124--4183361	43	5.6	43	83	2	284	30	11	17	40	1.84
4183356--4183560	37	5.6	37	80	9	188	25	12	22	39	1.89
4183356--4183542	73	2.5	73	83	9	211	25	12	22	40	1.89
4184562--4184737	21	7.9	21	69	18	106	32	3	9	54	1.50
4184556--4184686	47	2.8	46	86	6	158	32	3	9	54	1.47
4184562--4184723	24	7.0	24	72	15	137	32	3	9	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4184791--4185039	32	8.7	32	65	22	108	28	4	10	56	1.52
4184772--4184892	56	2.2	56	89	4	183	28	3	12	55	1.53
4184840--4184882	20	2.2	20	91	0	68	32	0	11	55	1.36
4184791--4184959	56	3.0	56	82	5	191	28	2	11	56	1.49
4185012--4185103	21	4.4	20	76	13	78	29	4	10	55	1.54
4184999--4185112	41	2.8	41	80	5	97	32	5	9	52	1.56
4193470--4194088	308	2.0	309	99	0	1222	31	16	14	37	1.89
4196443--4196553	36	3.1	36	84	2	143	46	7	9	36	1.65
4199119--4199149	16	1.9	16	93	0	53	35	3	19	41	1.67
4199196--4199249	28	2.0	27	88	3	81	35	7	14	42	1.74
4202152--4202209	28	2.1	28	96	0	107	22	17	17	43	1.88
4203761--4203801	8	5.2	8	85	2	57	58	0	0	41	0.98
4203785--4203832	22	2.3	20	89	7	69	66	0	0	33	0.92
4203767--4203834	12	5.8	12	77	10	61	61	0	0	38	0.96
4209104--4209162	25	2.4	25	82	5	66	33	0	5	61	1.18
4210689--4210721	2	16.5	2	100	0	66	51	0	0	48	1.00
4211800--4211899	36	2.8	36	81	1	121	45	7	12	36	1.68
4225139--4225164	2	13.0	2	100	0	52	50	0	0	50	1.00
4227333--4227361	7	4.3	7	95	4	51	89	10	0	0	0.48
4227756--4227813	24	2.4	24	80	5	64	68	0	1	29	0.99
4231749--4231795	16	3.1	15	90	6	69	80	0	8	10	0.89
4231749--4231791	7	5.4	8	84	15	54	81	0	6	11	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4231749--4231784	16	2.2	16	100	0	72	83	0	5	11	0.80
4232696--4232898	60	3.5	59	91	2	329	48	4	7	38	1.54
4243390--4243443	10	5.6	10	82	6	67	74	0	16	9	1.07
4243390--4243443	20	2.8	19	89	10	83	74	0	16	9	1.07
4244172--4244239	33	2.1	33	83	5	84	30	13	20	35	1.91
4244486--4244933	44	10.4	43	79	7	444	23	12	20	43	1.85
4244486--4244933	87	5.2	86	81	5	460	23	12	20	43	1.85
4244486--4244931	131	3.4	130	81	5	478	23	12	19	44	1.85
4245086--4245132	9	5.2	9	82	14	53	78	0	2	19	0.85
4245098--4245134	10	3.8	10	89	3	58	81	0	0	18	0.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84