genome.fa.s157.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  61  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13687470--13687554	24	3.5	24	86	0	116	64	5	1	28	1.24
13688277--13688302	3	8.7	3	100	0	52	30	0	0	69	0.89
13688274--13688326	12	4.2	13	83	9	58	35	0	1	62	1.06
13688305--13688382	32	2.4	33	78	6	88	44	2	3	48	1.34
13688629--13688653	11	2.3	11	100	0	50	0	24	0	76	0.80
13689125--13689179	20	2.7	21	78	21	71	60	1	0	38	1.08
13689129--13689192	17	3.2	19	78	19	60	59	3	0	37	1.13
13689262--13689299	18	2.1	19	85	5	51	15	0	13	71	1.16
13693491--13693571	37	2.2	38	84	4	103	49	4	2	43	1.37
13696828--13696865	20	1.9	20	88	0	58	23	0	2	73	0.95
13698832--13698882	25	2.0	25	96	0	93	37	23	27	11	1.90
13699830--13700037	46	4.8	41	70	15	109	41	2	2	53	1.29
13700074--13700115	14	3.0	14	86	13	52	21	2	4	71	1.16
13700169--13700249	37	2.2	36	86	2	108	32	1	4	61	1.25
13700425--13700514	27	3.4	26	71	15	69	63	3	1	32	1.18
13700714--13700758	23	2.0	23	82	8	56	55	2	0	42	1.12
13702604--13702637	15	2.3	15	100	0	68	29	5	11	52	1.61
13703178--13703225	21	2.2	22	88	3	71	52	2	10	35	1.48
13703206--13703258	27	2.0	27	85	10	74	54	1	5	37	1.35
13703335--13703385	24	2.1	25	88	3	77	60	5	0	33	1.21
13703332--13703389	24	2.5	23	78	13	73	56	5	0	37	1.21
13704805--13704835	14	2.2	14	94	0	53	38	0	3	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13706086--13706136	21	2.4	22	84	12	70	49	1	7	41	1.43
13706373--13706421	21	2.2	22	82	7	55	36	2	2	59	1.21
13706373--13706420	22	2.1	23	81	11	55	35	2	2	60	1.20
13706662--13706691	11	2.8	11	95	5	53	63	6	0	30	1.20
13708645--13708799	78	2.0	78	96	0	283	34	10	16	38	1.83
13712662--13712690	14	2.0	15	93	6	51	31	0	6	62	1.22
13713294--13713336	20	2.2	20	87	8	61	37	0	0	62	0.95
13715477--13715517	3	13.7	3	94	0	73	0	34	0	65	0.93
13721865--13721918	19	2.9	18	75	5	54	46	0	0	53	1.00
13722089--13722130	19	2.2	19	91	0	66	47	0	2	50	1.14
13722400--13722512	43	2.7	41	73	17	97	61	4	0	32	1.21
13722610--13722661	19	2.7	20	77	14	56	59	3	0	36	1.16
13722679--13722737	31	1.9	31	100	0	118	45	0	5	49	1.24
13722679--13722744	31	2.1	31	94	0	114	48	0	4	46	1.22
13722728--13722778	20	2.6	20	79	11	61	50	0	5	43	1.26
13722683--13722757	31	2.5	30	86	6	98	46	0	5	48	1.25
13739311--13739385	37	2.0	38	89	2	116	52	10	9	28	1.67
13740396--13740444	17	2.7	18	77	22	57	73	0	0	26	0.83
13740402--13740444	12	3.5	12	87	3	59	72	0	0	27	0.85
13743593--13743646	13	4.2	13	85	2	74	16	12	22	48	1.80
13745551--13745596	7	6.7	7	85	9	51	39	2	2	56	1.24
13745559--13745596	13	2.8	14	84	15	53	42	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13746160--13746366	35	5.9	34	71	6	101	50	13	15	20	1.77
13746288--13746387	35	2.8	35	80	3	110	51	14	15	20	1.77
13746160--13746386	70	3.2	70	76	7	219	50	13	14	21	1.77
13746411--13746517	35	3.1	35	79	0	115	48	20	16	14	1.81
13746657--13746744	34	2.6	33	79	10	97	22	14	23	38	1.92
13746736--13746798	32	1.9	33	87	9	94	26	11	19	42	1.84
13747573--13747604	16	1.9	17	93	6	57	12	3	3	81	0.93
13747917--13748004	42	2.1	42	82	4	106	6	22	2	68	1.25
13750074--13750100	14	1.9	14	100	0	54	37	0	3	59	1.15
13754145--13754194	20	2.6	19	87	6	82	20	16	28	36	1.93
13754208--13754262	13	4.2	13	78	0	56	21	10	16	50	1.75
13754189--13754258	26	2.7	26	82	2	88	21	10	18	50	1.76
13754266--13754314	18	2.6	19	83	6	64	16	6	28	48	1.69
13756123--13756157	10	3.4	10	84	7	52	25	11	0	62	1.28
13756125--13756170	19	2.3	21	85	7	60	21	10	2	65	1.35
13756189--13756234	14	3.4	14	77	14	51	26	6	0	67	1.15
13756247--13756277	3	10.3	3	100	0	62	32	0	0	67	0.91
13756822--13756850	13	2.1	14	93	6	51	82	0	17	0	0.66
13767547--13767594	25	1.9	25	91	0	78	31	16	10	41	1.82
13768834--13768860	2	13.5	2	100	0	54	51	0	0	48	1.00
13771870--13771955	33	2.6	33	81	3	102	40	8	9	41	1.67
13775281--13775643	180	2.0	180	96	0	672	36	15	15	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13776001--13776039	2	19.5	2	89	0	60	51	0	2	46	1.14
13780532--13780556	2	12.5	2	100	0	50	48	0	0	52	1.00
13781380--13781422	19	2.3	19	84	8	52	30	4	2	62	1.28
13781444--13781510	14	4.4	14	71	14	53	64	0	0	35	0.94
13785980--13786824	416	2.0	419	92	2	1401	36	11	15	36	1.84
13786888--13786941	26	2.0	26	89	3	81	37	0	0	62	0.95
13790352--13790384	16	1.9	18	88	11	52	51	0	6	42	1.26
13793605--13793649	22	2.1	20	88	12	63	75	0	17	6	1.01
13794172--13794217	18	2.4	19	79	13	51	80	4	6	8	1.01
13794549--13794624	32	2.4	30	79	18	84	56	5	1	36	1.30
13794964--13795035	35	2.1	35	97	0	135	47	18	8	26	1.76
13798151--13798201	15	3.5	15	86	2	68	7	1	21	68	1.25
13803050--13803084	4	8.8	4	100	0	70	22	0	0	77	0.78
13808073--13808191	46	2.6	46	81	7	143	37	8	15	37	1.78
13808125--13808191	22	3.0	22	73	6	71	35	7	16	40	1.77
13808384--13808441	17	3.4	17	82	0	71	37	15	8	37	1.78
13808365--13808457	34	2.7	34	84	0	114	38	16	7	37	1.77
13808399--13808457	17	3.5	17	80	0	73	40	16	8	33	1.79
13808453--13808496	17	2.6	17	81	0	52	29	20	15	34	1.94
13808527--13808576	16	2.9	16	78	16	55	40	12	8	40	1.72
13808534--13808571	19	2.0	19	89	0	58	47	10	7	34	1.67
13808583--13808615	17	1.9	17	93	0	57	33	6	21	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13808728--13808832	17	6.0	17	68	6	57	36	18	11	34	1.86
13808763--13808817	18	3.0	19	73	10	60	36	12	10	40	1.79
13808743--13808834	36	2.6	35	77	3	103	34	18	10	35	1.86
13813825--13813980	72	2.1	70	79	10	161	29	21	16	33	1.95
13814844--13815034	43	4.4	43	78	11	201	27	12	14	45	1.81
13814844--13815037	88	2.2	86	84	7	241	27	12	14	45	1.81
13815045--13815116	36	2.0	36	94	0	126	29	12	15	43	1.83
13815972--13816034	16	3.9	15	76	12	54	22	3	1	73	1.07
13817808--13817872	2	32.5	2	100	0	130	0	0	49	50	1.00
13819214--13819239	13	2.0	13	100	0	52	30	30	7	30	1.85
13820452--13820597	70	2.1	70	98	1	283	52	9	17	20	1.73
13822751--13822790	3	13.3	3	94	0	71	65	2	0	32	1.06
13831821--13831869	20	2.4	20	86	3	62	30	6	10	53	1.59
13833026--13833056	2	15.5	2	93	0	53	51	0	0	48	1.00
13834429--13834468	13	3.0	13	92	3	62	32	2	0	65	1.06
13849467--13849492	13	2.0	13	100	0	52	15	15	38	30	1.88
13854532--13854556	2	12.5	2	100	0	50	52	0	0	48	1.00
13854999--13855036	2	19.0	2	100	0	76	50	0	0	50	1.00
13855587--13855618	2	16.5	2	93	6	57	50	0	0	50	1.00
13869071--13869120	24	2.1	24	100	0	100	42	16	4	38	1.66
13871039--13871091	26	2.0	26	100	0	106	35	22	3	37	1.72
13877525--13877557	6	5.5	6	86	13	50	18	66	0	15	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13878844--13878886	16	2.5	17	81	11	52	39	2	0	58	1.11
13878922--13878954	16	1.9	18	88	11	52	6	9	12	72	1.26
13879310--13879366	16	3.8	15	78	21	66	50	0	0	49	1.00
13879340--13879385	22	2.1	22	88	8	67	60	0	0	39	0.97
13879308--13879422	22	5.0	22	68	21	65	52	0	0	47	1.00
13879933--13879980	16	2.9	17	82	14	57	45	0	0	54	0.99
13894593--13894641	25	2.0	24	84	7	64	51	2	40	6	1.38
13895884--13895955	36	2.0	36	91	0	117	51	13	11	23	1.73
13899264--13899337	31	2.4	31	84	4	87	33	17	20	28	1.95
13900084--13900496	49	8.5	49	75	6	347	30	12	12	45	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84