genome.fa.s157.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  16  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2945197--2945292	41	2.3	41	81	0	111	35	14	14	35	1.87
2945547--2945803	109	2.3	109	81	3	293	22	21	18	37	1.94
2945765--2945826	23	2.7	23	82	7	65	24	24	20	30	1.99
2945796--2945840	22	2.0	22	83	8	56	33	26	17	22	1.96
2945656--2946195	131	4.1	133	83	4	650	21	22	19	36	1.95
2945900--2945969	22	3.1	22	77	4	77	25	21	18	34	1.96
2946030--2946092	21	2.9	22	81	9	76	23	26	22	26	2.00
2947852--2947966	16	7.2	16	73	7	99	48	30	2	18	1.61
2947853--2948006	32	4.7	32	73	14	118	47	32	1	18	1.60
2947852--2947974	47	2.6	47	77	5	122	47	30	2	18	1.61
2947977--2948038	14	4.2	15	80	10	74	51	32	0	16	1.44
2947933--2948040	51	2.1	50	83	11	130	49	33	0	16	1.53
2947977--2948038	30	2.1	29	84	3	79	51	32	0	16	1.44
2948444--2948519	24	3.3	23	69	10	66	60	1	2	35	1.19
2948445--2948529	45	1.9	44	83	7	109	61	2	3	32	1.26
2953354--2953379	4	6.5	4	100	0	52	50	0	0	50	1.00
2957907--2957933	14	1.9	14	100	0	54	48	7	22	22	1.75
2965289--2965338	9	6.1	9	76	21	56	82	0	6	12	0.85
2965290--2965336	15	3.0	16	90	6	78	82	0	4	12	0.80
2966398--2966704	35	8.5	35	66	11	127	17	21	15	44	1.86
2966379--2967215	73	11.6	73	84	2	987	19	22	14	43	1.87
2966380--2967215	215	3.9	215	85	3	1009	19	22	14	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2966380--2967237	142	5.9	143	84	3	922	19	22	14	43	1.87
2967007--2967117	35	2.9	39	73	10	122	22	26	10	40	1.87
2967090--2967205	37	3.1	37	65	14	94	21	25	12	40	1.88
2967467--2967502	3	12.0	3	93	0	63	63	2	0	33	1.08
2967467--2967530	15	4.0	16	84	8	60	64	1	0	34	1.03
2967584--2967631	22	2.2	22	88	0	69	14	54	14	16	1.72
2969035--2969104	34	2.1	32	84	5	86	47	21	2	28	1.65
2970959--2971002	22	2.0	23	86	13	65	34	0	0	65	0.93
2971017--2971058	21	2.0	21	86	4	59	45	0	2	52	1.13
2971453--2971520	18	3.8	17	70	20	50	67	1	0	30	0.99
2971479--2971530	21	2.6	20	87	6	70	69	0	0	30	0.89
2971460--2971514	12	4.7	12	73	17	53	65	1	0	32	1.03
2972541--2972574	3	11.3	3	100	0	68	35	0	0	64	0.94
2972720--2972763	2	22.0	2	80	0	52	45	4	4	45	1.44
2974325--2974354	4	7.5	4	100	0	60	50	0	0	50	1.00
2979620--2979701	14	5.5	14	70	21	51	23	0	30	46	1.53
2979640--2979701	14	4.2	14	76	17	54	19	0	29	51	1.47
2979622--2979696	30	2.5	30	82	0	87	24	0	30	45	1.53
2979638--2979737	51	2.0	51	84	11	134	19	0	31	50	1.48
2979674--2979721	21	2.3	20	86	6	69	16	0	33	50	1.46
2979668--2979738	35	2.0	35	86	8	99	18	0	30	50	1.47
2979697--2979840	16	9.3	15	73	13	105	18	2	29	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2979712--2979751	7	5.4	7	82	11	53	12	0	27	60	1.33
2979697--2979839	32	4.6	31	75	8	141	18	2	30	49	1.59
2981587--2981651	21	3.0	22	80	11	80	27	21	26	24	1.99
2981710--2981779	22	3.1	22	77	4	77	34	18	21	25	1.96
2981484--2982027	132	4.1	132	79	8	536	37	18	21	22	1.94
2981483--2982005	130	3.9	135	78	9	388	38	18	21	21	1.94
2982388--2982479	41	2.3	41	82	1	105	34	16	13	35	1.87
2984830--2985141	74	4.3	74	85	2	411	20	25	13	41	1.89
2984881--2985001	35	3.3	35	67	8	89	19	24	15	40	1.90
2984902--2985014	35	3.1	35	67	12	84	21	23	12	42	1.87
2984836--2985141	147	2.1	143	85	2	405	20	24	13	41	1.88
2985397--2985457	3	19.0	3	77	12	59	62	1	0	36	1.05
2985403--2985456	10	5.5	10	80	10	67	62	0	0	37	0.95
2985403--2985457	16	3.6	16	78	9	69	63	0	0	36	0.95
2985416--2985469	27	2.0	26	89	10	83	66	0	0	33	0.92
2986969--2987038	34	2.1	32	84	5	86	47	21	2	28	1.65
2988957--2989002	19	2.4	20	85	7	60	45	0	2	52	1.13
2988969--2989009	20	2.0	20	86	9	57	53	0	0	46	1.00
2989396--2989450	12	4.7	12	73	17	53	65	1	0	32	1.03
2989415--2989457	21	2.1	21	91	4	70	69	0	0	30	0.88
2990486--2990513	3	9.3	3	100	0	56	35	0	0	64	0.94
2990659--2990702	2	22.0	2	80	0	52	45	4	4	45	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2991026--2991070	24	1.9	23	86	4	63	55	4	2	37	1.32
2992267--2992292	4	6.5	4	100	0	52	50	0	0	50	1.00
2997590--2997785	30	6.2	30	73	18	132	17	1	32	48	1.54
2997619--2997700	14	5.8	13	77	19	60	14	0	32	52	1.42
2997617--2997688	35	2.0	35	84	7	92	16	0	33	50	1.46
2997647--2997790	16	9.3	15	76	13	132	17	1	31	50	1.55
2997662--2997701	7	5.4	7	82	11	53	12	0	30	57	1.36
2997647--2997789	32	4.7	30	78	10	148	17	1	31	49	1.55
2999222--2999268	6	7.8	6	86	9	69	14	0	2	82	0.75
2999192--2999269	30	2.6	29	78	13	79	12	5	2	79	1.00
2999456--2999522	22	3.0	22	84	6	73	29	23	22	23	1.99
2999589--2999650	22	3.0	20	80	7	70	27	22	25	24	2.00
2999582--2999646	21	3.0	21	76	13	69	27	20	26	26	1.99
2999394--3000003	131	4.6	133	78	7	591	37	18	21	22	1.94
2999867--2999916	23	2.2	23	92	0	82	30	22	24	24	1.99
3000367--3000462	41	2.3	41	83	3	122	35	13	14	36	1.86
3000698--3000744	24	1.9	25	86	4	69	31	12	17	38	1.87
3002147--3002192	20	2.3	20	85	7	58	8	6	0	84	0.77
3008077--3008126	20	2.5	20	80	3	55	32	2	2	64	1.16
3008548--3008609	30	2.1	29	81	3	70	14	0	33	51	1.43
3008554--3008659	51	2.1	51	84	8	137	16	0	32	50	1.46
3008612--3008747	32	4.4	31	81	6	132	22	2	27	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3008612--3008747	16	8.7	15	70	10	85	22	2	27	47	1.63
3008612--3008748	15	8.8	16	66	13	79	21	2	27	48	1.62
3013656--3013726	33	2.1	34	89	2	108	36	45	5	12	1.66
3015340--3015383	22	2.0	23	86	4	63	40	0	9	50	1.34
3028230--3028329	34	2.9	34	66	14	78	17	23	16	44	1.87
3028196--3028904	73	9.8	73	82	4	717	20	22	14	43	1.87
3028474--3028598	35	3.6	34	74	3	115	16	18	16	48	1.82
3028477--3028578	34	3.0	34	76	1	105	15	20	17	46	1.85
3028204--3028904	142	4.9	142	80	6	741	20	22	13	43	1.87
3028646--3028746	34	2.9	35	77	10	107	25	17	9	46	1.79
3028751--3028867	39	3.1	39	75	14	136	19	25	13	41	1.88
3029135--3029179	3	15.0	3	85	0	63	60	4	0	35	1.17
3030683--3030749	17	4.0	17	75	9	57	47	28	2	20	1.65
3032702--3032747	20	2.3	21	85	7	60	43	0	2	54	1.12
3032785--3032837	25	2.1	25	82	6	63	49	9	0	41	1.35
3032872--3032917	20	2.4	19	77	3	56	15	6	4	73	1.19
3033158--3033207	21	2.3	21	79	3	55	66	0	2	32	1.03
3033160--3033213	27	2.0	28	85	3	74	66	0	1	31	1.02
3033738--3033782	17	2.5	18	82	7	56	2	6	8	82	0.93
3034260--3034287	3	9.3	3	100	0	56	35	0	0	64	0.94
3034430--3034459	2	15.0	2	92	0	51	46	0	3	50	1.18
3035916--3035949	4	8.5	4	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3038010--3038034	13	1.9	13	100	0	50	40	8	0	52	1.31
3040690--3040725	2	18.0	2	100	0	72	50	0	0	50	1.00
3041926--3041960	3	11.7	3	100	0	70	65	0	0	34	0.93
3041959--3042010	3	17.3	3	100	0	104	34	0	0	65	0.93
3043473--3043521	10	5.1	10	78	9	57	16	0	32	51	1.45
3043469--3043507	20	2.0	20	89	0	60	20	0	28	51	1.48
3043462--3043527	28	2.4	28	94	0	114	24	0	25	50	1.50
3051003--3051043	20	2.1	20	86	4	57	56	0	7	36	1.27
3052162--3052188	13	2.1	13	100	0	54	70	0	0	29	0.88
3052134--3052205	37	1.9	38	94	2	128	55	2	6	34	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84