genome.fa.s157.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  71  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15306125--15306681	145	3.8	146	74	8	447	38	12	14	34	1.84
15313251--15313281	16	1.9	16	93	0	53	9	9	0	80	0.90
15313680--15313719	21	1.9	21	94	0	71	20	2	37	40	1.66
15314600--15314642	23	2.0	21	82	13	52	41	13	2	41	1.57
15315184--15315251	19	3.7	19	80	7	77	17	1	39	41	1.59
15315183--15315253	36	2.0	36	91	0	115	19	2	38	39	1.67
15315223--15315282	19	3.2	19	83	4	68	16	3	38	41	1.65
15315547--15315577	12	2.6	12	100	0	62	54	0	9	35	1.33
15317991--15318094	43	2.4	44	85	3	131	41	16	10	31	1.82
15319292--15319324	14	2.4	14	94	0	57	48	27	6	18	1.71
15322027--15322092	24	2.5	26	76	18	66	4	22	1	71	1.13
15322079--15322146	26	2.8	24	78	12	75	4	20	0	75	0.98
15322971--15323013	22	2.0	22	86	9	61	39	0	9	51	1.34
15323680--15323761	10	8.6	9	71	9	56	23	12	12	52	1.72
15323678--15323748	29	2.4	29	83	4	99	25	12	12	49	1.76
15325912--15325962	25	2.0	25	96	0	93	29	9	19	41	1.84
15326908--15327040	37	3.6	37	84	0	167	34	6	21	37	1.80
15327006--15327095	28	3.1	28	82	9	117	38	3	22	35	1.71
15328269--15328309	19	2.2	18	86	4	55	14	17	0	68	1.22
15329212--15329259	22	2.2	22	96	0	87	58	2	0	39	1.10
15329215--15329298	36	2.3	36	86	8	109	55	1	0	42	1.07
15329256--15329298	23	2.0	21	90	9	68	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15329252--15329309	23	2.6	23	76	13	66	56	0	1	41	1.09
15329312--15329395	19	4.6	17	70	13	60	41	1	1	55	1.15
15329377--15329417	16	2.7	15	85	7	55	48	2	0	48	1.14
15330032--15330133	19	5.4	19	74	4	62	16	1	41	40	1.60
15330032--15330133	38	2.7	38	70	10	100	16	1	41	40	1.60
15335426--15335701	143	1.9	145	80	4	326	43	14	8	34	1.75
15335210--15335726	145	3.6	145	72	8	340	44	14	8	32	1.76
15336934--15336971	19	2.0	20	84	5	51	68	5	0	26	1.11
15340371--15340420	22	2.3	22	79	6	57	46	0	6	48	1.27
15343515--15343572	27	2.1	28	84	9	75	36	10	0	53	1.35
15343533--15343566	18	1.9	17	88	5	50	32	11	0	55	1.36
15345430--15345501	35	2.1	35	100	0	144	5	25	8	61	1.46
15346442--15346471	3	10.0	3	100	0	60	66	0	0	33	0.92
15348649--15348687	2	19.5	2	89	0	60	51	0	2	46	1.14
15348696--15348733	20	1.9	20	94	0	67	50	18	10	21	1.76
15348950--15348996	16	2.9	16	84	6	60	55	8	4	31	1.49
15349517--15349566	20	2.6	19	74	22	50	48	4	4	44	1.40
15351015--15351089	30	2.5	30	89	4	107	52	0	1	46	1.09
15353212--15353260	23	2.1	23	96	0	89	38	0	6	55	1.25
15354202--15354231	2	15.5	2	93	6	53	50	0	0	50	1.00
15355070--15355136	6	10.7	6	74	19	57	2	22	0	74	0.95
15355070--15355107	11	3.4	11	92	3	58	0	21	0	78	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15355073--15355131	16	3.6	16	80	13	66	1	22	0	76	0.88
15355340--15355375	16	2.2	17	90	5	56	8	5	13	72	1.27
15355340--15355375	17	2.2	16	90	5	54	8	5	13	72	1.27
15359275--15359299	2	12.5	2	100	0	50	52	0	0	48	1.00
15361219--15361252	17	2.0	17	100	0	68	29	17	5	47	1.71
15365278--15365335	24	2.4	25	82	11	75	32	6	0	60	1.23
15365832--15365881	22	2.3	23	83	10	61	52	0	0	48	1.00
15366791--15366848	26	2.3	25	82	5	64	43	0	6	50	1.29
15368489--15368537	26	1.9	26	91	4	82	53	4	22	20	1.63
15369177--15369356	99	1.8	99	83	12	244	42	5	20	31	1.75
15370979--15371043	14	4.6	14	70	0	58	40	9	6	44	1.61
15370979--15371048	28	2.5	28	85	2	104	41	10	5	42	1.62
15370979--15371051	14	5.2	14	67	18	53	41	10	5	42	1.63
15375068--15375517	218	2.1	218	83	5	561	24	9	9	56	1.62
15375491--15375881	195	2.0	195	80	7	436	23	6	9	60	1.52
15376841--15376872	16	2.0	16	93	0	55	53	6	3	37	1.42
15379058--15379088	14	2.2	14	94	0	53	45	3	0	51	1.17
15405033--15405071	14	2.4	18	76	24	50	2	48	0	48	1.15
15408825--15408866	22	1.9	22	90	0	66	45	9	11	33	1.73
15412760--15412801	22	1.9	22	90	0	66	45	9	11	33	1.73
15415702--15415758	30	1.9	30	88	0	87	40	17	14	28	1.88
15420547--15420603	30	1.9	30	96	0	105	38	17	12	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15420671--15420700	15	2.0	15	100	0	60	40	13	20	26	1.89
15424685--15424727	20	2.1	21	87	12	63	53	6	0	39	1.28
15428436--15428460	7	3.6	7	100	0	50	0	64	0	36	0.94
15431376--15431422	22	2.1	23	88	11	71	34	4	0	61	1.15
15431450--15431495	23	2.0	24	86	4	67	50	6	0	43	1.28
15432259--15432322	29	2.2	29	83	13	78	34	4	1	59	1.28
15438946--15438973	13	2.2	13	100	0	56	46	14	7	32	1.71
15442385--15442495	53	2.1	52	80	9	118	53	25	4	17	1.62
15446781--15447112	144	2.3	144	81	7	386	42	9	11	35	1.75
15462727--15462769	18	2.4	18	80	7	52	13	0	30	55	1.39
15462976--15463090	32	3.6	31	67	14	90	13	0	37	49	1.42
15462995--15463085	20	4.3	20	67	17	67	12	0	39	48	1.40
15464448--15464775	144	2.3	144	82	4	378	41	12	11	34	1.79
15466949--15466998	18	2.7	18	81	9	57	80	2	18	0	0.82
15466974--15466998	11	2.3	11	100	0	50	84	0	16	0	0.63
15468297--15468336	21	1.9	21	85	10	55	27	10	17	45	1.80
15468599--15468691	30	3.1	30	77	13	93	35	16	5	43	1.71
15471027--15471068	18	2.4	18	80	11	52	14	14	0	71	1.15
15472436--15472492	26	2.2	24	82	17	62	43	0	0	56	0.99
15486957--15486990	14	2.4	14	90	0	50	67	8	2	20	1.31
15492680--15492704	6	4.2	6	100	0	50	20	32	32	16	1.94
15494541--15494612	32	2.2	32	80	0	81	40	31	1	26	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15497291--15497349	30	2.0	30	83	6	75	37	0	1	61	1.07
15497385--15497409	13	1.9	13	100	0	50	16	8	4	72	1.24
15499417--15499476	29	2.0	30	81	15	72	61	1	5	31	1.27
15500864--15500970	32	3.4	31	82	8	119	36	1	7	54	1.40
15501156--15501185	14	2.1	14	93	0	51	43	0	3	53	1.17
15501215--15501257	19	2.3	18	80	11	50	48	0	4	46	1.22
15502964--15503022	26	2.4	24	83	10	82	49	0	3	47	1.18
15503090--15503212	43	2.8	43	80	7	115	48	4	0	45	1.29
15503129--15503214	43	2.0	42	86	6	120	48	2	1	47	1.22
15503158--15503214	14	4.1	14	74	17	55	49	1	0	49	1.11
15503203--15503235	17	1.9	17	93	0	57	45	3	3	48	1.33
15503183--15503224	20	2.1	20	86	0	57	50	2	0	47	1.14
15505131--15505198	26	2.7	25	80	14	77	45	7	4	42	1.52
15506224--15506256	12	2.5	13	90	9	50	66	6	6	21	1.35
15506570--15506946	84	4.5	84	83	5	406	42	17	14	25	1.87
15506560--15507075	44	12.1	43	73	11	237	43	17	12	26	1.85
15506605--15506836	41	5.5	41	73	10	146	41	18	15	23	1.89
15506570--15507075	85	5.9	83	79	9	430	43	16	13	26	1.84
15506919--15507031	47	2.5	45	87	8	165	49	10	9	30	1.69
15506919--15507067	45	3.3	44	82	10	169	49	11	9	29	1.70
15507190--15507226	19	1.9	19	88	0	56	35	13	10	40	1.80
15508837--15508909	17	4.2	17	77	13	69	9	10	0	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15508853--15508923	33	2.1	34	85	10	94	7	8	2	81	0.95
15509285--15509333	25	2.0	25	87	0	71	2	10	4	83	0.85
15511630--15511848	114	1.9	114	87	1	323	27	15	13	43	1.84
15511652--15511943	114	2.6	114	82	3	338	27	16	14	41	1.88
15513360--15513387	2	14.0	2	100	0	56	50	0	0	50	1.00
15517701--15517736	3	12.0	3	100	0	72	66	0	0	33	0.92
15518965--15518995	4	7.8	4	100	0	62	51	22	0	25	1.48
15520240--15520281	3	14.0	3	100	0	84	66	0	0	33	0.92
15525668--15525698	7	4.4	7	91	0	53	83	0	16	0	0.64
15527985--15528019	16	2.1	17	89	5	54	48	0	11	40	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84