genome.fa.s157.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  17  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3056827--3056869	23	1.9	22	86	13	61	41	2	16	39	1.61
3056998--3057032	12	2.8	12	91	8	52	80	0	2	17	0.84
3057194--3057228	18	1.9	18	88	0	52	42	2	0	54	1.15
3060628--3060670	21	2.0	21	81	0	50	41	30	18	9	1.82
3064104--3064129	2	13.0	2	100	0	52	0	50	0	50	1.00
3067566--3067613	20	2.5	19	90	10	71	29	0	0	70	0.87
3068276--3068341	16	3.8	17	74	10	62	1	12	9	77	1.06
3068828--3068857	12	2.4	13	94	5	53	30	10	0	60	1.30
3070219--3070264	20	2.4	19	81	3	65	15	8	4	71	1.26
3070505--3070564	21	2.8	21	79	5	57	68	0	1	30	0.99
3070507--3070559	27	2.0	27	84	0	70	67	0	1	30	1.01
3073238--3073263	4	6.5	4	100	0	52	50	0	0	50	1.00
3077733--3077779	2	24.0	2	95	4	87	51	0	0	48	1.00
3078121--3078157	3	12.3	3	100	0	74	35	0	0	64	0.94
3080801--3080826	11	2.4	11	100	0	52	26	0	0	73	0.84
3081767--3081832	33	2.0	33	87	0	96	34	40	6	18	1.75
3088908--3088948	20	2.1	20	86	4	57	56	0	7	36	1.27
3090035--3090089	24	2.3	24	96	0	101	52	3	9	34	1.50
3090858--3090890	16	2.1	16	94	0	57	42	9	0	48	1.35
3094316--3094349	11	3.1	11	88	12	52	17	2	0	79	0.86
3095090--3095124	18	1.9	18	88	0	52	42	2	0	54	1.15
3101774--3101802	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3102928--3103422	57	8.5	57	89	4	731	36	11	7	44	1.69
3102928--3103422	116	4.3	115	91	2	742	36	11	7	44	1.69
3103470--3103542	6	11.5	6	73	15	58	78	2	4	15	1.02
3103454--3103530	26	2.9	26	83	7	84	76	2	3	16	1.05
3103470--3103543	13	5.8	13	73	19	57	78	2	4	14	1.01
3104532--3104619	6	14.8	6	80	8	92	75	1	3	20	1.02
3104538--3104633	11	8.4	11	74	20	81	76	1	5	17	1.03
3104546--3104633	47	1.9	45	86	13	126	75	1	5	18	1.07
3104783--3104821	1	39.0	1	84	0	51	0	0	7	92	0.39
3104783--3104821	8	4.6	9	87	12	64	0	0	7	92	0.39
3104829--3105053	42	5.7	41	73	16	206	36	24	19	20	1.95
3104919--3104980	29	2.1	29	96	0	115	45	19	20	14	1.85
3104877--3105022	71	2.1	71	92	2	240	40	21	19	18	1.92
3105035--3105072	19	2.0	19	100	0	76	31	31	21	15	1.94
3104993--3105114	61	2.0	61	96	0	226	33	25	20	20	1.97
3105054--3105256	41	4.9	41	92	4	320	35	22	18	23	1.95
3105054--3105228	83	2.1	83	95	2	316	35	23	19	21	1.96
3105054--3105256	83	2.5	82	91	5	304	35	22	18	23	1.95
3106244--3106299	8	6.9	8	84	10	69	10	14	1	73	1.18
3106244--3106299	17	3.4	17	80	4	62	10	14	1	73	1.18
3112399--3112449	23	2.2	23	96	0	93	27	21	11	39	1.88
3116731--3116872	60	2.4	58	90	3	223	36	11	7	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3116878--3117082	58	3.5	57	88	5	306	36	13	7	41	1.74
3116878--3117082	57	3.5	58	89	3	315	36	13	7	41	1.74
3117202--3117241	4	9.5	4	89	10	62	72	5	0	22	1.04
3117202--3117241	9	4.8	8	93	6	62	72	5	0	22	1.04
3117202--3117241	13	3.2	12	89	10	62	72	5	0	22	1.04
3119209--3119256	20	2.5	19	90	10	71	29	0	0	70	0.87
3119696--3119750	20	2.7	20	97	2	101	72	3	23	0	1.00
3120470--3120499	12	2.4	13	94	5	53	30	10	0	60	1.30
3121512--3121559	20	2.4	21	83	13	66	41	0	0	58	0.98
3121527--3121566	20	2.0	20	85	9	55	47	0	0	52	1.00
3121974--3122020	22	2.1	22	88	0	67	65	0	0	34	0.93
3122540--3122581	16	2.4	18	80	11	52	2	7	9	80	0.97
3123032--3123059	3	9.3	3	100	0	56	35	0	0	64	0.94
3123400--3123436	4	9.5	4	88	5	58	29	0	0	70	0.88
3134423--3134471	15	3.3	15	80	13	57	0	28	2	69	1.00
3137816--3137850	2	17.5	2	87	0	52	54	0	0	45	0.99
3153599--3153650	24	2.2	24	85	0	68	53	1	0	44	1.11
3160416--3160454	5	7.8	5	88	0	51	69	0	30	0	0.89
3163988--3164014	2	13.5	2	100	0	54	48	0	0	51	1.00
3166958--3167016	30	2.0	30	96	0	109	27	1	30	40	1.66
3168536--3168577	2	21.0	2	90	0	66	50	0	0	50	1.00
3169795--3169819	9	2.8	9	100	0	50	92	0	0	8	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3174444--3174473	2	15.0	2	100	0	60	0	50	0	50	1.00
3175023--3175053	14	2.3	13	94	5	53	70	0	3	25	1.02
3178289--3178320	2	16.0	2	100	0	64	50	0	0	50	1.00
3185370--3185422	2	26.5	2	100	0	106	50	0	49	0	1.00
3189595--3189656	23	2.7	22	79	13	63	8	3	8	80	1.00
3189595--3189662	25	2.9	22	77	14	64	10	2	7	79	1.03
3211137--3211175	14	2.8	14	84	0	51	76	0	10	12	1.01
3217365--3217405	21	2.0	20	85	4	55	17	7	14	60	1.55
3219265--3219310	23	2.0	23	95	0	83	23	17	28	30	1.97
3221523--3221563	21	2.0	21	90	4	66	21	7	9	60	1.52
3228029--3228152	62	2.0	62	100	0	248	40	17	12	29	1.87
3236994--3237027	13	2.7	13	90	4	52	61	0	0	38	0.96
3238536--3238704	43	3.9	43	83	6	234	27	9	22	40	1.84
3238544--3238717	86	2.0	86	97	0	330	28	9	23	39	1.85
3239978--3240039	31	2.0	31	96	3	117	25	12	1	59	1.43
3240488--3240657	85	2.0	86	88	5	256	27	20	15	37	1.92
3243459--3243495	19	2.0	19	89	5	58	43	0	5	51	1.24
3244133--3244183	24	2.2	22	82	6	57	52	1	3	41	1.31
3245333--3245379	23	2.0	23	95	0	85	36	12	12	38	1.82
3247102--3247295	97	2.0	97	97	0	370	32	20	22	23	1.98
3247315--3247356	15	2.8	16	78	7	52	50	4	33	11	1.60
3250409--3250449	20	2.0	21	85	9	57	68	7	0	24	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3250796--3250847	24	2.0	26	82	10	63	26	3	5	63	1.34
3254594--3254623	12	2.5	12	88	0	51	60	3	0	36	1.14
3257393--3257425	17	1.9	17	93	0	57	42	12	21	24	1.86
3260208--3260248	21	2.0	21	90	4	66	17	4	14	63	1.47
3263004--3263099	48	2.0	48	93	0	165	26	26	17	30	1.97
3263032--3266497	693	5.0	693	95	0	6299	25	24	18	31	1.97
3267538--3267580	21	2.1	21	86	4	61	65	2	0	32	1.06
3268801--3268969	59	2.9	59	79	10	202	25	9	22	42	1.83
3271761--3271790	16	1.9	16	93	6	53	53	3	33	10	1.51
3277497--3277611	6	20.8	5	77	11	70	35	4	4	55	1.39
3277518--3277651	3	46.7	3	75	15	79	33	7	2	55	1.43
3277503--3277651	14	11.0	13	68	19	74	34	6	4	55	1.45
3277529--3277632	46	2.1	49	81	10	115	34	8	2	53	1.46
3278027--3278074	21	2.3	20	79	6	51	18	6	27	47	1.72
3278264--3278288	12	2.1	12	100	0	50	24	0	20	56	1.43
3278483--3278550	19	3.2	22	78	17	74	17	5	2	73	1.16
3295360--3295390	12	2.5	13	94	5	55	51	0	0	48	1.00
3296887--3296924	19	2.0	19	94	0	67	23	15	2	57	1.51
3297224--3297280	27	2.1	28	78	12	66	31	5	3	59	1.36
3302602--3302677	26	2.9	25	77	13	73	42	2	3	51	1.34
3304875--3304914	21	2.0	21	90	5	64	22	7	7	62	1.47
3309497--3309527	12	2.5	13	94	5	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3312743--3312832	32	2.6	33	79	11	85	17	6	4	71	1.25
3314915--3315025	3	38.7	3	73	15	92	34	4	3	57	1.36
3314926--3315014	46	1.9	44	86	11	124	33	4	4	57	1.39
3315024--3315076	3	17.7	3	92	0	88	33	28	0	37	1.58
3315021--3315079	18	3.3	18	100	0	118	33	25	0	40	1.56
3315476--3315523	21	2.3	20	79	6	51	18	6	27	47	1.72
3315714--3315738	12	2.1	12	100	0	50	24	0	20	56	1.43
3315933--3316000	19	3.2	22	78	17	74	17	5	2	73	1.16
3319716--3319763	24	2.0	24	84	8	62	12	14	2	70	1.25
3329260--3329407	81	1.9	78	87	4	215	58	12	1	27	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84