genome.fa.s157.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  35  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8168371--8168407	2	18.5	2	100	0	74	51	0	48	0	1.00
8180142--8180214	19	3.9	19	75	13	80	49	5	5	39	1.49
8182195--8182929	367	2.0	366	98	0	1425	32	17	18	31	1.94
8197121--8197212	48	1.9	47	84	2	121	44	17	4	33	1.68
8197197--8197234	19	2.0	19	94	0	67	42	23	0	34	1.55
8199033--8199092	18	3.3	18	74	6	59	65	3	0	31	1.09
8199288--8199312	13	1.9	13	100	0	50	84	0	8	8	0.79
8202665--8202692	2	14.0	2	100	0	56	50	0	0	50	1.00
8210019--8210046	3	9.3	3	100	0	56	0	32	0	67	0.91
8221997--8222032	18	2.0	18	88	0	54	19	63	8	8	1.47
8228086--8228177	47	1.9	47	80	10	107	53	3	0	43	1.17
8228164--8228239	22	3.6	20	74	10	62	48	2	1	47	1.24
8228463--8228521	29	2.0	30	83	3	75	45	1	1	50	1.21
8228418--8228536	39	3.2	35	79	13	112	49	1	2	46	1.25
8228497--8228558	24	2.6	24	70	14	56	48	1	4	45	1.33
8228786--8228826	21	2.0	20	86	9	57	51	0	4	43	1.23
8231810--8231841	2	16.0	2	100	0	64	50	0	0	50	1.00
8238582--8238621	21	2.0	21	85	9	57	60	10	0	30	1.30
8238707--8238780	20	3.8	19	74	16	71	51	9	5	33	1.57
8238711--8238790	38	2.0	40	83	9	103	52	7	5	35	1.51
8238852--8238914	24	2.6	24	82	7	74	53	12	3	30	1.54
8239003--8239096	20	4.6	20	71	11	75	54	7	4	34	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8239005--8239096	41	2.2	41	90	0	148	54	7	4	33	1.49
8239050--8239297	32	8.3	31	71	17	172	55	8	4	31	1.50
8239018--8239161	21	7.0	22	66	21	78	56	8	4	30	1.50
8239096--8239166	26	2.9	25	85	6	92	59	8	5	26	1.49
8239094--8239162	23	2.9	23	80	14	77	59	8	5	26	1.50
8239059--8239182	61	2.0	60	87	4	178	57	8	4	29	1.49
8239180--8239234	20	2.8	20	71	0	56	50	9	7	32	1.61
8239273--8239396	24	5.2	24	74	13	103	54	7	2	35	1.41
8239282--8239395	25	4.8	24	69	21	80	56	7	1	35	1.37
8240074--8240113	14	3.2	12	89	10	55	75	2	0	22	0.93
8244251--8244289	14	2.9	14	88	11	55	46	12	5	35	1.65
8244380--8244421	20	2.0	21	86	13	61	21	9	4	64	1.42
8244982--8245012	14	2.2	14	94	0	53	41	22	0	35	1.54
8245385--8245468	23	3.5	23	82	9	105	29	7	8	54	1.57
8246913--8246986	34	2.2	34	80	4	87	35	2	1	60	1.19
8250368--8250427	29	2.1	29	80	0	66	53	6	0	40	1.27
8260513--8260542	16	1.9	15	93	6	51	70	16	6	6	1.31
8262364--8262431	12	5.7	11	76	17	57	33	0	0	66	0.92
8262400--8262460	15	4.1	14	73	12	50	42	0	0	57	0.98
8262809--8262842	14	2.3	15	90	5	52	47	0	5	47	1.26
8269594--8269637	3	14.7	3	85	0	61	29	2	2	65	1.16
8269702--8269952	56	4.4	56	71	16	176	46	6	11	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8280847--8280903	22	2.9	19	76	20	55	78	1	10	8	1.02
8281899--8282159	44	6.0	44	86	2	298	22	11	19	45	1.83
8283158--8283203	3	15.7	3	90	4	76	28	0	2	69	1.00
8283282--8283506	57	4.0	57	74	14	216	47	4	12	35	1.62
8283338--8283446	52	2.1	53	81	8	125	46	7	12	33	1.70
8283508--8283753	56	4.1	59	81	11	252	51	4	8	34	1.54
8288874--8289463	293	2.0	293	98	0	1144	35	17	19	27	1.94
8290790--8290836	14	3.4	14	77	16	53	34	0	2	63	1.06
8291125--8291189	29	2.2	29	84	10	80	44	0	1	53	1.09
8291319--8291456	31	4.6	30	75	12	113	52	1	1	44	1.19
8291785--8291833	22	2.3	21	82	10	55	34	4	0	61	1.15
8298364--8298415	21	2.5	21	79	17	63	76	3	15	3	1.07
8298568--8298596	13	2.1	14	93	6	51	6	10	0	82	0.83
8302537--8302606	31	2.2	33	80	17	85	51	0	0	48	1.00
8304395--8304460	27	2.5	28	80	14	77	51	0	4	43	1.22
8306679--8306719	21	2.0	21	85	0	55	31	7	29	31	1.85
8307747--8307776	2	15.0	2	92	0	51	46	0	3	50	1.18
8313814--8313848	15	2.2	16	90	5	54	45	8	2	42	1.49
8322775--8322807	1	33.0	1	100	0	66	0	0	0	100	0.00
8325218--8325243	1	26.0	1	100	0	52	0	0	100	0	0.00
8327003--8327076	36	2.1	36	94	0	130	33	28	8	29	1.86
8335668--8335705	2	19.5	2	83	5	51	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8346503--8346536	2	16.5	2	87	6	50	44	0	2	52	1.16
8347190--8347271	41	2.0	40	92	2	137	35	12	18	34	1.88
8347470--8347513	17	2.8	16	86	6	54	56	0	0	43	0.99
8347472--8347523	8	6.8	8	78	6	54	61	0	0	38	0.96
8351905--8351959	14	3.7	14	78	9	56	36	1	1	60	1.18
8351904--8351971	29	2.3	30	85	7	86	39	1	1	57	1.17
8352188--8352245	21	2.7	21	79	10	55	37	0	3	58	1.15
8352369--8352431	16	3.8	17	72	6	58	26	3	3	66	1.22
8352964--8353039	23	3.3	23	75	16	68	56	0	5	38	1.22
8353077--8353138	23	2.6	25	82	5	83	48	0	1	50	1.10
8353077--8353145	23	2.8	24	73	8	68	50	0	2	46	1.16
8353429--8353473	18	2.5	19	82	13	60	57	0	2	40	1.11
8362928--8362967	21	1.9	21	100	0	80	45	20	20	15	1.86
8364456--8364500	23	2.0	24	86	8	67	57	2	0	40	1.11
8365399--8365427	8	3.8	8	90	9	51	41	0	0	58	0.98
8370455--8370508	28	2.0	28	92	7	94	64	7	12	14	1.47
8371940--8372010	22	3.1	22	71	18	65	42	5	1	50	1.34
8372138--8372162	7	3.6	7	100	0	50	24	0	0	76	0.80
8372159--8372221	29	2.1	30	82	2	74	28	3	3	65	1.24
8372149--8372221	30	2.5	29	82	8	78	30	2	2	64	1.21
8373703--8373727	12	2.1	12	100	0	50	40	20	8	32	1.81
8377102--8377139	20	1.9	20	88	0	58	28	0	2	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8377158--8377216	25	2.4	25	80	5	75	49	0	1	49	1.11
8377254--8377287	16	2.2	15	89	5	50	61	0	0	38	0.96
8378724--8378753	14	2.2	14	94	5	53	50	3	0	46	1.18
8381451--8381479	2	14.5	2	100	0	58	51	0	0	48	1.00
8383186--8383225	3	13.3	3	94	0	71	35	35	30	0	1.58
8384831--8385107	153	1.8	153	97	0	527	24	18	24	31	1.98
8401291--8401315	2	12.5	2	100	0	50	48	0	0	52	1.00
8405981--8406023	21	2.0	21	81	0	50	46	0	0	53	1.00
8406185--8406246	22	2.7	22	82	7	61	53	1	3	41	1.27
8407309--8407375	34	1.9	35	90	3	109	38	2	19	38	1.67
8416956--8416993	3	13.0	3	88	5	60	34	0	63	2	1.09
8422138--8422230	48	1.9	48	88	0	141	38	12	26	21	1.90
8426696--8426733	2	19.0	2	100	0	76	50	0	0	50	1.00
8426880--8426913	17	2.1	17	88	5	52	44	8	0	47	1.34
8426934--8427002	30	2.3	29	83	11	86	46	2	7	43	1.46
8433169--8433201	17	1.9	17	88	11	50	75	0	21	3	0.93
8437474--8437524	26	2.0	26	88	0	75	15	25	29	29	1.96
8437608--8437647	3	13.3	3	89	10	64	30	0	0	70	0.88
8447581--8447646	21	3.0	21	76	10	53	43	1	1	53	1.19
8447684--8447730	14	3.4	14	78	0	58	63	2	0	34	1.06
8448632--8448662	2	15.5	2	100	0	62	51	0	0	48	1.00
8453990--8454096	51	2.1	51	92	0	178	19	12	20	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8459237--8459279	22	2.0	22	90	0	68	32	11	9	46	1.72
8459650--8459676	2	13.5	2	100	0	54	0	51	0	48	1.00
8464409--8464446	17	2.2	17	86	9	51	42	0	2	55	1.14
8475487--8475519	15	2.1	16	88	5	50	36	0	0	63	0.95
8475486--8475527	22	2.0	21	90	4	66	38	0	0	61	0.96
8477476--8477516	21	2.0	20	85	4	55	63	2	0	34	1.08
8477602--8477670	16	4.2	16	72	17	52	68	5	0	26	1.12
8477534--8477689	42	3.8	40	76	7	125	64	6	2	26	1.30
8477602--8477665	25	2.5	25	82	2	83	68	6	0	25	1.12
8477749--8477787	16	2.3	17	86	8	53	28	7	0	64	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84