genome.fa.s157.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  60  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13473518--13473545	14	2.0	14	100	0	56	50	0	0	50	1.00
13473552--13473617	20	3.2	21	76	16	68	53	3	3	40	1.32
13473552--13473637	41	2.1	41	81	12	97	51	5	2	40	1.39
13473621--13473703	29	2.8	29	73	15	73	57	7	0	34	1.26
13473644--13473731	18	4.7	18	75	12	70	63	5	0	30	1.17
13473596--13473753	66	2.4	65	81	11	162	57	8	0	33	1.33
13473878--13473942	20	3.2	21	78	4	71	49	23	4	23	1.68
13473876--13473958	21	4.0	20	75	6	67	46	25	3	24	1.68
13474755--13474802	20	2.3	21	89	10	73	35	6	6	52	1.52
13474803--13474858	27	2.0	28	90	10	89	42	8	5	42	1.59
13474807--13474869	27	2.3	26	79	15	74	39	7	3	49	1.48
13474960--13474993	18	1.9	17	88	5	50	38	2	8	50	1.49
13475122--13475151	15	1.9	16	93	6	53	26	20	3	50	1.64
13475157--13475467	163	1.9	162	96	2	572	41	6	5	46	1.52
13475339--13475378	20	2.1	19	85	4	53	35	0	5	60	1.19
13475436--13475506	29	2.5	28	84	4	97	60	7	4	28	1.42
13478001--13478038	3	12.7	3	88	0	58	68	26	0	5	1.11
13478001--13478041	15	2.7	15	100	0	82	68	24	0	7	1.15
13478000--13478044	9	5.3	9	76	15	51	66	22	0	11	1.22
13481684--13481737	25	2.2	25	96	0	99	33	9	16	40	1.80
13482616--13482651	17	2.1	17	89	5	54	75	0	0	25	0.81
13486186--13486230	2	22.5	2	91	8	74	48	0	2	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13487415--13487444	2	15.5	2	93	6	53	50	0	0	50	1.00
13487703--13487741	11	3.5	11	85	0	60	20	7	7	64	1.45
13487865--13487916	26	2.0	27	84	3	70	25	9	13	51	1.71
13487874--13487930	12	4.6	12	76	8	51	26	10	15	47	1.78
13490304--13490478	73	2.4	74	84	4	221	28	9	14	48	1.74
13490616--13490671	28	2.0	27	86	3	76	26	1	5	66	1.23
13492061--13492089	14	2.1	14	100	0	58	20	13	13	51	1.75
13497555--13497702	43	3.5	43	74	16	130	29	14	16	40	1.87
13497937--13497982	6	7.8	6	90	2	67	21	0	8	69	1.15
13497934--13497982	18	2.8	18	96	3	91	22	0	8	69	1.14
13497934--13498006	12	6.2	11	84	6	65	20	0	8	71	1.11
13497937--13498007	6	12.0	6	83	8	56	19	0	8	71	1.11
13497934--13498006	18	4.1	17	83	15	78	20	0	8	71	1.11
13500238--13500277	20	2.0	21	85	5	55	10	10	5	75	1.19
13511665--13511761	47	2.1	47	86	0	131	27	18	16	37	1.92
13515954--13515988	17	2.1	17	100	0	70	17	20	28	34	1.95
13517982--13518152	85	2.0	85	93	0	288	29	21	12	35	1.91
13523500--13523534	2	17.5	2	93	0	61	48	0	2	48	1.16
13524116--13524194	41	1.9	41	84	0	104	49	12	15	22	1.78
13525634--13525658	2	12.5	2	100	0	50	52	0	0	48	1.00
13527008--13527062	3	18.3	3	100	0	110	32	0	0	67	0.91
13527723--13527759	3	12.7	3	91	5	58	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13531784--13531831	22	2.3	22	89	7	73	66	6	12	14	1.42
13534876--13534968	48	1.9	49	87	8	138	17	5	2	75	1.09
13534883--13535000	48	2.4	45	81	16	121	19	6	2	71	1.21
13545719--13545757	12	3.4	11	85	3	51	87	5	0	7	0.68
13546726--13546849	66	1.9	66	88	3	187	22	16	8	52	1.70
13546725--13546876	66	2.3	66	80	4	164	22	16	9	51	1.72
13546838--13546980	66	2.2	66	82	1	162	18	16	11	52	1.74
13546867--13547260	65	6.2	66	74	12	198	21	18	11	48	1.79
13547127--13547265	65	2.1	65	88	5	201	20	21	12	45	1.84
13548408--13548515	48	2.2	48	79	12	114	15	10	0	73	1.15
13548447--13548510	9	6.8	9	73	19	51	18	6	1	73	1.12
13548423--13548539	48	2.4	47	78	16	123	19	10	1	68	1.27
13550221--13550260	3	13.3	3	100	0	80	32	0	0	67	0.91
13550260--13550560	156	1.9	156	94	0	530	46	14	10	28	1.79
13550790--13550831	21	1.9	21	85	9	57	42	2	0	54	1.13
13550897--13551044	61	2.4	60	80	5	172	43	4	12	39	1.62
13552299--13552347	24	2.1	23	81	11	55	42	4	2	51	1.32
13552576--13552617	13	3.0	14	83	16	52	50	0	0	50	1.00
13558469--13558512	21	2.1	21	91	0	70	15	27	9	47	1.76
13571355--13571380	1	26.0	1	100	0	52	100	0	0	0	0.00
13571995--13572033	20	2.0	20	90	10	62	43	5	5	46	1.48
13574929--13574966	18	2.1	19	90	5	60	7	21	15	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13576718--13576743	6	4.3	6	100	0	52	34	0	0	65	0.93
13578599--13578623	13	1.9	13	100	0	50	12	0	0	88	0.53
13586138--13586187	2	25.0	2	95	0	91	48	50	0	2	1.12
13587435--13587618	93	2.0	89	83	6	226	41	5	10	42	1.62
13587805--13588000	109	1.8	109	80	8	240	54	6	9	30	1.56
13588709--13588744	16	2.3	15	90	4	54	91	2	5	0	0.49
13590206--13590248	19	2.2	19	83	4	50	20	6	4	67	1.33
13591408--13591581	96	1.8	94	85	4	242	40	12	9	37	1.75
13603298--13603388	46	2.0	46	86	0	128	23	8	16	51	1.72
13605448--13605489	21	2.1	21	83	12	54	33	0	19	47	1.49
13606619--13606656	2	19.5	2	89	5	51	42	0	2	55	1.14
13614137--13614163	4	6.8	4	100	0	54	0	51	0	48	1.00
13614382--13614439	32	1.9	30	82	10	73	32	1	1	63	1.14
13614473--13614547	34	2.2	34	84	11	93	45	5	2	46	1.40
13615296--13615325	2	15.0	2	92	0	51	0	46	0	53	1.00
13615773--13615949	69	2.5	68	83	6	194	43	3	14	38	1.62
13618525--13618579	25	2.2	24	81	9	67	40	3	0	56	1.17
13621145--13621322	60	3.0	59	84	5	234	43	3	11	41	1.59
13621145--13621233	28	3.0	28	66	15	72	43	1	13	41	1.51
13621151--13621348	59	3.4	59	84	5	233	44	4	11	39	1.61
13626732--13626904	17	10.2	17	73	6	91	29	17	9	42	1.82
13626721--13626804	34	2.5	34	80	0	96	32	19	9	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13626723--13626888	84	2.0	83	85	1	224	30	18	9	42	1.82
13626934--13626967	15	2.3	15	89	0	50	38	17	8	35	1.81
13628507--13628680	90	2.0	88	85	4	233	47	4	9	38	1.57
13633016--13633043	12	2.3	12	100	0	56	67	0	7	25	1.15
13634525--13634568	22	2.0	22	95	0	79	34	4	11	50	1.59
13638508--13638551	22	2.0	22	90	0	70	31	11	11	45	1.76
13641762--13641801	20	2.1	19	90	4	62	57	0	15	27	1.38
13642301--13642552	130	2.0	128	87	1	360	41	15	12	30	1.84
13642542--13642648	10	10.7	10	71	21	64	54	9	1	34	1.44
13642679--13642734	28	2.0	28	86	6	78	44	7	0	48	1.30
13642710--13642873	9	17.1	9	71	16	98	51	4	1	42	1.32
13642709--13642852	20	7.4	19	69	16	73	50	4	2	42	1.35
13642860--13642922	24	2.5	26	82	12	78	57	1	4	36	1.30
13642929--13642976	25	1.9	24	84	16	62	62	10	0	27	1.27
13643091--13643123	9	3.6	9	95	4	57	36	3	0	60	1.12
13643091--13643129	9	4.0	10	90	10	55	41	5	0	53	1.23
13643207--13643261	20	2.8	20	78	13	60	65	3	3	27	1.26
13643207--13643249	19	2.4	17	78	17	50	65	4	4	25	1.32
13643411--13643513	10	9.8	10	69	21	59	31	1	6	60	1.34
13643528--13643556	10	2.7	11	89	10	51	51	0	0	48	1.00
13644422--13644496	22	3.4	22	83	5	89	36	5	16	42	1.70
13644758--13644900	75	1.9	75	85	0	196	32	7	14	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13649856--13649890	10	3.7	10	85	14	56	40	8	11	40	1.72
13649856--13649890	18	1.9	18	100	0	70	40	8	11	40	1.72
13657308--13657362	20	2.7	20	81	10	58	36	20	18	25	1.94
13657413--13657447	19	1.9	19	88	11	56	51	11	5	31	1.61
13663684--13663739	20	2.8	20	88	2	76	25	23	3	48	1.67
13669000--13669051	20	2.5	21	87	12	72	23	26	3	46	1.69
13670449--13670715	133	2.0	133	86	2	367	34	14	17	32	1.91
13679413--13679442	14	2.1	15	93	6	53	26	6	0	66	1.16
13679573--13679615	21	2.0	21	86	0	59	20	11	20	46	1.82
13687459--13687560	6	17.0	6	83	0	96	63	4	0	30	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84