genome.fa.s157.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  6  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625910--625937	6	4.7	6	100	0	56	71	0	0	28	0.86
625950--625994	22	2.0	22	83	8	56	60	0	0	40	0.97
626113--626172	7	8.6	7	74	18	54	60	20	0	20	1.37
626102--626187	36	2.4	35	88	1	127	54	24	1	19	1.51
626418--626456	13	3.1	13	85	3	53	82	5	12	0	0.83
627492--627558	20	3.4	20	80	8	84	64	4	1	29	1.22
627694--627724	3	10.3	3	100	0	62	64	0	0	35	0.94
627900--627964	28	2.4	28	86	2	87	47	30	1	20	1.59
627848--628118	30	9.4	28	73	11	129	48	29	2	19	1.62
628063--628140	28	2.8	27	75	11	68	52	32	1	14	1.49
628115--628194	22	3.5	22	75	6	79	53	21	0	25	1.46
628152--628210	22	2.7	23	81	7	77	55	20	0	23	1.43
629319--629414	30	3.3	29	84	5	122	48	29	0	21	1.50
629357--629414	16	3.8	16	77	15	68	48	31	0	20	1.50
629349--629442	30	3.1	30	82	1	98	45	30	2	21	1.63
633052--633162	17	6.9	17	75	11	74	41	37	1	18	1.62
633103--633162	8	7.5	8	72	12	52	45	38	1	15	1.56
636195--636334	68	2.0	69	91	5	230	41	12	12	34	1.79
641548--641594	2	24.0	2	86	4	69	44	0	0	55	0.99
654690--654742	24	2.2	24	93	6	90	24	16	18	39	1.91
656660--656687	2	14.0	2	100	0	56	50	50	0	0	1.00
659534--659668	68	2.0	68	95	0	243	35	16	11	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673638--673670	15	2.1	16	88	5	50	63	0	0	36	0.95
680598--680637	21	1.9	21	84	0	53	50	0	5	45	1.23
682044--682107	34	1.9	34	84	6	87	56	3	3	37	1.31
695815--695892	37	2.3	34	78	10	88	35	2	3	57	1.30
696738--696778	20	2.1	20	86	4	57	29	2	9	58	1.43
706513--706542	13	2.3	13	94	0	51	56	16	0	26	1.40
707859--707930	33	2.2	34	82	9	96	36	2	4	56	1.33
712014--712087	38	1.9	38	88	0	112	20	22	16	40	1.91
720091--720138	23	2.1	23	92	0	78	25	29	20	25	1.99
725686--725729	22	2.0	22	90	0	70	34	6	11	47	1.66
727267--727295	2	14.5	2	100	0	58	48	0	0	51	1.00
738760--738806	20	2.5	20	82	6	62	4	44	0	51	1.21
753710--753752	19	2.3	18	76	15	52	41	0	4	53	1.21
754588--754613	1	26.0	1	100	0	52	100	0	0	0	0.00
756079--756108	2	15.0	2	92	0	51	50	0	3	46	1.18
757494--757659	90	1.9	88	86	8	243	31	5	10	53	1.57
758025--758089	23	2.9	23	71	11	62	24	4	1	69	1.16
760156--760216	30	2.0	30	100	0	122	24	19	19	36	1.95
777996--778034	19	2.1	19	85	0	51	64	2	0	33	1.08
787894--788001	52	2.1	52	96	0	198	46	12	6	35	1.67
794297--795299	504	2.0	504	96	0	1828	32	19	20	27	1.97
796455--796480	1	26.0	1	100	0	52	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797472--797542	29	2.4	29	74	4	72	33	7	9	49	1.63
812172--812237	1	66.0	1	72	0	51	86	6	6	1	0.76
812172--812236	16	3.8	17	84	10	87	86	6	6	1	0.77
812172--812237	19	3.4	18	82	12	62	86	6	6	1	0.76
814256--814363	18	6.0	19	69	15	70	50	12	6	31	1.65
814493--814555	24	2.6	24	85	7	83	53	9	3	33	1.49
814635--814725	33	2.8	33	86	3	112	56	12	5	26	1.57
814669--814710	21	2.0	20	86	4	57	59	11	4	23	1.51
815503--815528	12	2.2	12	100	0	52	69	7	0	23	1.14
815737--815762	13	2.0	13	100	0	52	38	7	0	53	1.30
816752--816788	11	3.4	11	92	0	56	54	18	0	27	1.44
820308--820371	13	5.3	12	73	17	53	31	0	7	60	1.25
820319--820438	36	3.3	35	68	17	93	30	0	6	62	1.26
820315--820444	70	1.9	69	83	13	169	28	1	6	63	1.29
820298--820445	70	2.1	71	78	16	166	26	2	7	63	1.34
821489--821895	57	6.8	57	82	12	471	45	6	13	34	1.69
824804--824953	49	3.1	49	80	5	160	52	22	22	3	1.61
824915--824950	17	2.1	17	94	0	63	44	30	25	0	1.54
825307--825363	22	2.6	22	97	0	105	36	15	15	31	1.90
825858--825889	3	10.7	3	100	0	64	65	0	0	34	0.93
826533--826571	19	2.1	19	100	0	78	46	5	33	15	1.68
838601--838627	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853612--853664	26	2.0	26	85	0	70	35	7	9	47	1.64
861458--861509	26	2.0	26	85	7	70	28	9	11	50	1.70
862233--862263	13	2.3	13	94	5	53	32	0	0	67	0.91
863527--863558	15	2.0	17	88	11	50	28	6	0	65	1.16
869928--869953	2	13.0	2	100	0	52	50	0	0	50	1.00
872145--872171	14	1.9	14	100	0	54	59	0	0	40	0.98
885982--886029	21	2.2	23	85	7	64	39	0	6	54	1.26
886095--886310	106	2.0	107	84	5	278	41	3	6	48	1.45
886324--886409	36	2.4	35	76	3	91	52	3	8	36	1.48
890820--890900	42	1.9	42	100	0	162	28	28	14	28	1.96
894392--894430	18	2.1	19	85	4	53	25	2	0	71	0.98
900771--900806	18	2.0	18	89	10	56	22	0	0	77	0.76
900425--900838	206	2.0	201	85	11	518	43	6	5	44	1.52
901078--901112	2	17.5	2	100	0	70	48	0	0	51	1.00
902362--902757	197	2.0	197	97	0	756	29	12	16	42	1.84
905458--905490	12	2.9	11	91	8	57	63	0	0	36	0.95
905604--905662	20	3.0	20	74	16	59	38	6	0	54	1.27
910494--910538	19	2.4	19	84	0	54	24	0	4	71	1.05
910598--910645	24	2.0	25	84	12	64	70	2	0	27	0.98
910580--910629	24	2.1	24	84	0	64	68	0	2	30	1.01
910926--910998	33	2.2	34	81	16	91	52	5	1	41	1.33
912535--912610	30	2.5	30	86	0	107	48	2	9	39	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914257--914304	21	2.3	21	79	17	55	50	6	0	43	1.27
921158--921211	27	2.0	27	100	0	108	18	22	11	48	1.79
929561--929598	17	2.2	17	90	0	58	44	7	0	47	1.32
931770--931812	21	2.0	23	86	9	63	39	0	0	60	0.97
931835--931886	26	2.0	26	84	0	68	25	13	13	48	1.79
931989--932018	15	2.0	15	100	0	60	20	6	26	46	1.75
932299--932475	94	1.9	94	91	2	293	37	9	16	36	1.81
937275--937318	2	22.5	2	95	4	81	50	0	0	50	1.00
940411--940444	2	17.0	2	90	0	50	52	0	2	44	1.16
940985--941043	15	3.9	15	75	8	57	77	1	6	13	1.03
943865--943906	18	2.3	19	83	4	50	19	4	7	69	1.31
943944--944007	20	3.0	21	74	25	62	39	1	3	56	1.25
946720--946747	9	3.1	9	100	0	56	67	32	0	0	0.91
950851--950888	2	19.0	2	100	0	76	0	50	0	50	1.00
954167--954226	28	2.1	28	93	6	104	33	23	18	25	1.97
961055--961095	20	2.0	20	95	0	73	24	2	29	43	1.67
961639--961694	27	2.0	30	82	10	73	58	0	1	39	1.08
962069--962111	16	2.6	17	81	7	52	37	0	9	53	1.33
966796--966825	15	2.0	15	93	0	51	6	23	0	70	1.11
973917--973956	16	2.4	17	91	4	64	62	2	0	35	1.09
974866--974915	21	2.4	21	78	18	59	64	12	2	22	1.37
985287--985350	32	2.0	32	85	11	87	45	6	0	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998473--998516	22	2.0	22	95	0	79	43	13	11	31	1.80
1002593--1002619	2	13.5	2	100	0	54	51	0	0	48	1.00
1014812--1014859	23	2.1	22	81	11	53	37	10	2	50	1.49
1022651--1022689	3	13.3	3	94	5	71	69	0	0	30	0.89
1025246--1025287	22	1.9	22	100	0	84	33	23	19	23	1.97
1026264--1026302	2	19.5	2	89	0	60	51	0	0	48	1.00
1026520--1026556	12	3.1	12	88	0	56	54	2	2	40	1.29
1030937--1031208	57	4.7	56	85	8	339	36	12	5	45	1.66
1030937--1031212	119	2.4	119	88	4	395	36	11	6	45	1.66
1031226--1031310	5	17.6	5	73	18	65	77	1	5	15	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84