genome.fa.s157.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  39  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9176837--9177018	30	6.2	29	76	8	145	47	30	1	19	1.59
9185643--9185700	30	1.9	30	96	0	107	31	6	22	39	1.80
9186584--9186640	13	3.9	15	74	19	50	21	3	8	66	1.34
9186584--9186640	29	2.0	29	96	0	105	21	3	8	66	1.34
9186593--9186639	13	3.4	13	78	16	58	21	4	4	70	1.22
9186594--9186643	14	3.5	14	75	24	59	18	6	4	72	1.22
9187317--9187355	2	19.5	2	94	0	69	46	0	0	53	1.00
9201280--9201321	21	2.0	21	100	0	84	52	9	19	19	1.72
9205630--9205770	62	2.3	63	87	6	207	46	7	8	36	1.63
9205635--9205805	62	2.8	60	76	13	175	45	9	7	37	1.66
9206821--9206850	2	15.0	2	100	0	60	50	0	50	0	1.00
9209450--9209501	13	4.2	13	80	11	65	67	0	0	32	0.91
9209603--9209646	19	2.4	19	85	11	56	50	0	0	50	1.00
9211305--9211346	2	21.0	2	100	0	84	0	50	0	50	1.00
9212617--9212673	27	2.1	27	87	6	80	45	7	0	47	1.30
9223682--9223715	13	2.6	13	80	0	50	52	0	0	47	1.00
9228254--9228330	17	4.8	17	70	15	56	45	0	2	51	1.14
9228274--9228350	18	4.4	17	72	15	59	41	0	3	54	1.19
9229939--9230037	33	3.0	33	80	0	117	29	32	2	36	1.69
9231794--9231861	35	2.0	35	91	2	111	42	14	25	17	1.87
9252868--9252892	12	2.1	12	100	0	50	16	8	32	44	1.76
9258115--9258156	19	2.4	17	81	14	50	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9258256--9258307	18	2.9	18	80	13	63	46	0	1	51	1.12
9258266--9258299	16	2.1	17	88	5	52	50	0	0	50	1.00
9261597--9261621	13	1.9	13	100	0	50	40	0	0	60	0.97
9269698--9269736	12	3.2	12	82	7	51	43	0	0	56	0.99
9269698--9269749	20	2.3	21	84	15	61	44	0	0	55	0.99
9272814--9272855	22	1.9	22	85	0	57	80	2	2	14	0.90
9274260--9274291	2	16.0	2	93	0	55	46	0	3	50	1.17
9274641--9274717	24	3.2	24	62	17	59	35	7	16	40	1.78
9274624--9274739	49	2.4	49	97	1	216	35	8	15	40	1.78
9274625--9274702	25	3.2	25	62	17	63	35	10	14	39	1.80
9274650--9274726	24	3.2	24	62	17	59	35	7	19	37	1.81
9285645--9285738	24	3.9	24	75	0	98	11	8	48	30	1.69
9285810--9285862	6	8.8	6	87	0	52	5	0	71	22	1.06
9293762--9293796	18	1.9	18	94	0	61	0	2	65	31	1.07
9294413--9294625	101	2.1	102	96	0	392	38	9	4	47	1.55
9295534--9295567	2	17.0	2	100	0	68	50	0	0	50	1.00
9296817--9296858	2	21.0	2	100	0	84	50	0	0	50	1.00
9298191--9298223	2	16.5	2	100	0	66	51	0	48	0	1.00
9303994--9304060	35	1.9	35	82	11	84	31	13	16	38	1.87
9307297--9307540	80	3.0	80	81	2	292	45	24	7	22	1.78
9307486--9307539	28	1.9	28	85	7	74	61	18	1	18	1.44
9308288--9310649	702	3.4	699	89	2	3462	38	11	14	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9316851--9317106	140	1.8	139	79	8	295	32	7	16	44	1.75
9318608--9318952	134	2.6	134	82	3	408	40	19	13	26	1.88
9320625--9320670	16	2.9	16	81	12	58	36	8	8	45	1.66
9320829--9320860	16	2.0	16	93	0	55	37	3	6	53	1.42
9321403--9321466	32	2.0	32	100	0	128	34	31	9	25	1.87
9321395--9321534	53	2.6	53	90	3	217	36	29	10	24	1.88
9321488--9321618	21	6.1	21	85	2	154	38	29	8	22	1.84
9321494--9321628	42	3.1	42	84	3	171	40	29	7	22	1.81
9322254--9322300	13	3.1	15	82	11	53	65	10	0	23	1.23
9326055--9326096	15	2.8	15	100	0	84	26	19	26	28	1.98
9326081--9326160	19	4.7	18	72	20	73	36	20	22	21	1.95
9326093--9326157	32	2.0	32	100	0	130	40	21	23	15	1.91
9327406--9327779	129	2.9	126	80	5	392	43	12	4	40	1.61
9327672--9327713	22	1.9	22	85	9	59	47	2	0	50	1.14
9327429--9327826	129	3.1	129	76	7	366	42	13	3	40	1.61
9328771--9328805	16	2.1	17	94	5	63	65	0	0	34	0.93
9328889--9328934	16	2.8	17	80	6	58	21	4	0	73	1.00
9328888--9328935	15	3.1	15	80	14	53	22	4	0	72	1.01
9333100--9333138	2	19.5	2	100	0	78	51	0	48	0	1.00
9335633--9335686	13	4.2	12	80	15	56	72	0	3	24	1.01
9336186--9336222	18	2.0	20	84	10	51	37	16	2	43	1.62
9339606--9339641	18	1.9	19	94	5	65	44	11	5	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9339850--9339892	21	2.0	21	86	0	59	34	16	13	34	1.88
9340049--9340100	22	2.4	22	93	3	88	28	15	19	36	1.92
9340356--9340465	21	5.1	21	85	2	130	40	18	8	32	1.80
9340357--9340465	22	5.0	22	86	1	132	41	18	7	33	1.78
9341514--9341556	17	2.7	16	80	19	54	4	23	2	69	1.18
9341550--9341642	17	5.9	15	75	22	84	10	16	0	73	1.10
9341577--9341642	30	2.2	30	84	13	82	10	13	0	75	1.04
9341550--9341643	8	11.8	8	75	20	81	10	15	0	73	1.09
9346056--9346096	9	4.2	9	82	17	55	43	2	0	53	1.13
9346185--9346221	12	3.1	12	84	0	56	78	2	0	18	0.87
9346485--9346533	22	2.2	22	82	13	57	4	38	0	57	1.18
9356286--9356598	81	3.9	82	80	3	350	27	13	16	43	1.84
9356286--9356598	40	7.8	40	80	3	277	27	13	16	43	1.84
9356286--9356662	40	9.2	40	78	8	271	28	13	15	42	1.85
9357777--9357825	21	2.3	22	86	10	66	16	0	12	71	1.14
9357764--9357873	28	3.8	28	70	20	75	19	0	7	72	1.13
9359501--9359626	64	2.0	63	84	1	162	39	8	7	43	1.65
9359584--9359817	124	1.9	127	84	4	323	41	11	7	39	1.71
9359584--9359923	190	1.8	188	82	7	449	41	10	7	39	1.69
9359578--9359880	63	4.9	63	73	7	224	41	11	7	39	1.68
9359584--9359967	188	2.0	186	80	8	440	40	11	8	40	1.70
9359793--9360114	129	2.5	125	83	6	389	40	10	9	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9360858--9361005	47	3.3	43	82	11	163	27	10	8	52	1.66
9362125--9362162	20	1.9	20	100	0	76	47	15	0	36	1.46
9362579--9363005	43	9.9	43	73	7	224	46	16	11	25	1.80
9362605--9362872	85	3.1	85	79	6	274	47	15	11	26	1.79
9362706--9363001	130	2.3	129	80	7	341	47	16	11	25	1.79
9363002--9363044	21	2.0	21	95	0	77	30	23	16	30	1.96
9363007--9363054	21	2.3	21	85	0	60	35	22	12	29	1.91
9363023--9363120	43	2.2	44	80	5	119	44	18	7	29	1.76
9363091--9363246	43	3.6	42	82	3	177	44	13	9	32	1.76
9364614--9364660	23	2.0	23	84	8	60	19	10	0	70	1.16
9364622--9364704	15	5.5	16	74	17	72	13	12	0	74	1.07
9364657--9364705	19	2.8	18	87	12	75	8	16	0	75	1.03
9371956--9371992	12	3.1	12	92	0	56	0	32	0	67	0.91
9373852--9373920	29	2.5	28	80	15	72	52	1	5	40	1.34
9400636--9400695	15	4.0	15	77	12	61	56	1	0	41	1.09
9400630--9400696	7	9.3	7	75	12	64	55	1	0	43	1.09
9401971--9402218	62	4.0	62	97	1	457	33	3	6	56	1.42
9402276--9402300	8	3.1	8	100	0	50	12	0	0	88	0.53
9403419--9403470	20	2.7	21	82	11	58	57	5	3	32	1.40
9403594--9403757	84	1.9	87	82	8	212	55	10	4	29	1.54
9403713--9403809	32	3.3	31	70	25	93	55	9	5	29	1.53
9403728--9403782	23	2.3	23	90	9	85	60	9	3	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9403683--9403919	55	4.4	55	81	4	232	53	8	5	32	1.55
9403833--9403888	20	2.6	23	81	13	75	51	8	7	32	1.60
9403872--9403923	14	3.3	16	76	15	54	53	7	3	34	1.48
9403863--9403911	14	3.3	14	76	15	53	57	6	4	32	1.42
9404495--9404534	15	2.5	16	88	8	55	72	2	0	25	0.97
9404829--9404937	37	2.9	38	86	2	114	36	19	14	29	1.91
9404847--9404937	37	2.4	38	90	1	139	34	20	16	28	1.95
9404940--9405086	43	3.4	43	84	3	190	44	17	8	28	1.79
9406529--9406572	23	2.0	22	86	4	61	4	4	6	84	0.88
9409551--9409600	21	2.5	19	78	12	55	22	16	16	46	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84