genome.fa.s157.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  74  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16009621--16009665	18	2.5	18	81	0	54	8	15	57	17	1.63
16010381--16010429	9	5.8	9	76	11	50	73	0	4	22	1.00
16011286--16011323	6	6.3	6	100	0	76	15	0	68	15	1.22
16020580--16020616	13	2.9	13	85	14	51	21	0	0	78	0.75
16021573--16021628	16	3.5	16	76	13	53	73	7	5	14	1.23
16022636--16022694	20	3.3	18	68	15	50	50	0	0	49	1.00
16022680--16022720	21	2.0	21	95	0	73	46	0	2	51	1.14
16025469--16025509	15	2.7	16	79	20	52	21	0	2	75	0.92
16025479--16025522	18	2.4	18	84	3	52	18	0	6	75	1.02
16025484--16025529	18	2.4	19	76	20	51	15	0	6	78	0.95
16037644--16037937	131	2.3	128	81	8	312	25	14	17	42	1.88
16037589--16038051	171	2.7	172	81	8	509	25	14	17	43	1.86
16037581--16038045	43	10.8	43	76	7	390	24	14	17	43	1.86
16037931--16038069	44	3.2	43	78	6	145	23	13	17	46	1.83
16038925--16038976	27	1.9	27	85	14	72	17	3	5	73	1.19
16041097--16041175	28	2.8	28	79	11	79	37	13	12	35	1.83
16045125--16045163	20	2.0	20	89	0	60	56	0	5	38	1.22
16046771--16046865	46	2.0	47	93	4	165	23	4	17	54	1.60
16047632--16047698	13	5.0	13	77	18	59	61	0	0	38	0.96
16047632--16047698	27	2.5	27	75	15	68	61	0	0	38	0.96
16059080--16059112	15	2.2	15	94	0	57	48	12	0	39	1.40
16061071--16061117	19	2.5	18	77	16	51	4	6	10	78	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16061901--16061944	18	2.5	17	85	7	61	9	13	0	77	0.99
16061899--16061964	18	3.6	17	70	21	53	10	12	0	77	1.00
16063145--16063183	20	2.0	19	85	14	53	30	0	0	69	0.89
16063215--16063271	26	2.2	26	78	6	62	56	1	1	40	1.20
16064737--16064769	17	1.9	17	93	0	57	6	0	45	48	1.27
16064775--16064805	13	2.4	13	88	0	53	19	0	41	38	1.51
16064784--16064856	25	2.8	25	75	6	74	21	2	30	45	1.66
16064876--16064917	16	2.5	18	81	14	54	21	7	28	42	1.79
16064868--16064916	17	2.9	16	80	14	55	22	6	28	42	1.77
16067111--16067385	124	2.2	127	79	13	300	36	13	11	39	1.80
16067333--16067486	61	2.5	63	84	2	195	35	6	17	40	1.76
16067332--16067610	63	4.4	60	72	11	184	36	8	15	39	1.78
16067411--16067678	129	2.1	127	79	5	290	37	10	12	39	1.77
16067735--16067980	126	2.0	126	82	4	309	32	11	15	39	1.84
16067761--16068011	126	2.0	127	81	6	296	33	11	15	38	1.84
16071695--16071752	27	2.1	27	87	6	82	32	17	12	37	1.86
16076339--16076368	2	15.0	2	92	0	51	50	3	0	46	1.18
16076769--16076820	3	17.3	3	100	0	104	32	0	0	67	0.91
16078669--16078694	2	13.0	2	100	0	52	50	0	0	50	1.00
16082810--16082845	15	2.4	15	100	0	72	33	22	13	30	1.93
16083769--16083839	35	2.1	35	86	2	99	32	25	9	32	1.89
16083874--16084131	127	2.0	127	81	8	303	31	15	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16084804--16084850	11	4.2	11	78	10	51	85	0	8	6	0.75
16084812--16084859	13	3.5	13	83	16	62	83	0	10	6	0.81
16084805--16084844	21	1.9	22	90	10	66	85	0	7	7	0.76
16084804--16084845	22	1.9	22	85	0	57	85	0	7	7	0.73
16085917--16085961	21	2.1	21	91	0	72	42	2	15	40	1.59
16086538--16086960	43	9.7	43	80	4	413	26	13	15	44	1.83
16086538--16086956	87	4.8	87	80	3	445	26	13	15	44	1.83
16086538--16086941	130	3.1	128	82	3	461	26	12	15	45	1.82
16088181--16088230	4	12.8	4	76	19	52	26	0	2	72	0.96
16088181--16088230	7	6.4	8	76	19	52	26	0	2	72	0.96
16094371--16094398	13	2.2	13	100	0	56	7	17	35	39	1.78
16096512--16096556	23	2.0	21	83	8	54	17	13	6	62	1.52
16103004--16103028	2	12.5	2	100	0	50	48	0	0	52	1.00
16108413--16108446	16	2.2	16	89	5	52	64	0	0	35	0.94
16108501--16108555	27	2.0	27	82	7	65	60	5	3	30	1.37
16108574--16108653	30	2.5	33	84	10	94	32	7	2	57	1.40
16110293--16110535	121	2.0	121	95	0	441	19	32	16	30	1.94
16114414--16114473	29	2.1	29	81	6	68	61	1	1	35	1.16
16114483--16114517	17	2.1	17	89	10	54	28	0	2	68	1.04
16114495--16114554	25	2.3	26	80	8	70	45	1	0	53	1.10
16115393--16115434	13	3.2	13	83	6	57	16	2	0	80	0.81
16124979--16125033	27	2.0	27	89	0	83	30	38	10	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16125893--16125919	2	13.5	2	100	0	54	51	0	0	48	1.00
16126873--16126918	20	2.2	22	88	7	69	2	26	0	71	0.97
16127379--16127409	4	8.0	4	92	7	55	74	0	0	25	0.82
16134214--16134251	19	2.0	19	94	0	67	44	5	18	31	1.72
16135615--16135645	16	1.9	16	93	0	53	58	0	9	32	1.31
16138751--16138805	27	2.0	27	89	0	83	30	38	10	20	1.87
16141166--16141221	24	2.5	21	77	8	58	26	19	1	51	1.57
16142682--16142736	27	2.0	27	92	0	92	47	9	10	32	1.70
16153226--16153253	14	2.0	14	100	0	56	64	14	0	21	1.29
16153766--16154046	44	6.4	43	71	13	184	41	16	11	29	1.83
16153769--16154046	87	3.2	88	77	10	293	42	16	11	29	1.83
16153786--16154037	131	1.9	131	78	3	274	43	15	10	30	1.80
16154527--16154610	45	1.9	45	80	4	100	36	15	8	39	1.78
16154710--16154765	14	4.3	14	73	13	57	44	16	0	39	1.47
16156013--16156102	7	11.7	7	76	16	72	8	15	0	75	1.03
16156012--16156103	8	11.8	8	77	17	95	8	15	0	76	1.02
16156012--16156102	15	5.9	15	76	12	94	8	15	0	75	1.03
16156006--16156103	31	3.1	32	80	7	119	10	15	0	74	1.07
16171783--16171966	59	3.1	59	93	2	298	34	10	8	46	1.69
16171981--16172014	14	2.3	15	90	10	52	82	0	0	17	0.67
16171981--16172014	5	6.8	5	90	10	52	82	0	0	17	0.67
16174050--16174117	23	2.9	24	77	14	70	72	2	4	20	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16174051--16174106	23	2.4	23	82	11	71	73	3	3	19	1.13
16174518--16174584	1	67.0	1	84	0	89	0	0	7	92	0.38
16174521--16174581	8	7.9	8	96	3	108	0	0	8	91	0.41
16174293--16174652	132	2.7	133	84	6	415	26	14	12	47	1.79
16174591--16175040	40	11.0	41	91	4	632	38	21	17	22	1.93
16176287--16176341	16	3.4	15	79	20	58	5	16	0	78	0.93
16176287--16176343	17	3.4	17	78	9	64	5	17	0	77	0.95
16176287--16176359	33	2.2	32	81	13	87	6	17	0	75	1.02
16180190--16180357	59	2.8	59	95	1	293	35	12	7	45	1.69
16182425--16182485	17	3.3	16	72	25	50	75	3	3	18	1.08
16189669--16189728	29	2.0	29	83	3	75	6	25	3	65	1.33
16190744--16190829	32	2.7	33	83	3	104	22	8	20	48	1.75
16191626--16191658	15	2.1	16	88	5	50	6	18	0	75	1.00
16192301--16192355	28	1.9	29	85	3	76	54	3	0	41	1.18
16192966--16193015	8	6.0	8	78	17	57	80	0	4	16	0.87
16194261--16194333	27	2.9	25	73	11	69	61	1	5	31	1.27
16196415--16196458	14	3.2	13	79	17	52	20	2	4	72	1.13
16197181--16197267	44	2.0	44	88	4	131	21	5	12	59	1.54
16201131--16201188	7	8.1	7	81	11	64	81	0	18	0	0.70
16201110--16201188	29	2.7	29	80	7	81	78	1	18	1	0.89
16201131--16201188	22	2.7	21	82	10	73	81	0	18	0	0.70
16201110--16201188	14	5.4	14	73	8	59	78	1	18	1	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16202307--16202524	40	5.5	40	70	8	167	30	15	19	33	1.93
16209012--16209037	2	13.0	2	100	0	52	50	0	0	50	1.00
16209727--16209757	13	2.5	12	94	5	53	51	6	0	41	1.27
16209720--16209787	4	17.5	4	77	6	59	44	4	4	47	1.43
16209720--16209791	23	3.3	23	75	14	64	44	5	4	45	1.46
16211916--16211984	32	2.2	32	94	0	120	47	8	15	27	1.75
16213131--16213213	29	3.0	29	65	22	70	27	13	10	48	1.75
16215812--16215875	30	2.1	30	83	11	78	42	9	7	40	1.66
16220131--16220171	16	2.6	16	84	0	55	60	17	0	21	1.35
16224482--16224517	2	18.0	2	100	0	72	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84