genome.fa.s157.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  82  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17693522--17693552	2	15.5	2	93	0	53	45	3	0	51	1.17
17698080--17698130	24	2.1	24	96	0	93	49	13	19	17	1.80
17700335--17700377	22	2.0	22	90	0	68	30	20	16	32	1.95
17700284--17700485	110	1.8	110	82	4	264	22	19	16	41	1.90
17700465--17700507	22	2.0	22	85	0	59	32	20	16	30	1.95
17700675--17700912	93	2.5	94	83	2	280	26	20	17	35	1.94
17700821--17700885	22	3.0	22	90	0	103	26	16	20	36	1.93
17700891--17700995	37	2.8	37	82	0	120	23	20	8	46	1.78
17701280--17701318	21	1.9	21	94	5	71	84	0	10	5	0.76
17702648--17702705	3	19.0	3	84	10	73	67	3	0	29	1.07
17702821--17702894	3	26.3	3	76	17	79	68	2	0	28	1.03
17702817--17702892	26	3.1	26	80	16	92	67	2	0	30	1.05
17703025--17703080	14	3.9	14	74	4	58	50	28	1	19	1.58
17703061--17703148	42	2.1	42	84	2	113	51	26	0	22	1.49
17703154--17703204	14	3.8	13	73	17	50	52	33	0	13	1.41
17703250--17703280	15	2.1	15	93	0	53	51	38	0	9	1.35
17709824--17709905	41	2.0	41	97	0	155	13	28	9	48	1.74
17710324--17710423	48	2.1	48	86	3	139	37	19	16	28	1.92
17710684--17710716	14	2.4	14	100	0	66	39	6	24	30	1.79
17710959--17710984	7	3.7	7	100	0	52	23	15	0	61	1.33
17714878--17714997	39	3.1	38	67	17	93	37	23	4	35	1.74
17714871--17715015	78	1.9	78	86	2	211	35	26	3	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17724119--17724152	14	2.4	15	90	9	54	82	11	0	5	0.83
17725434--17725535	18	5.7	18	67	19	52	31	3	31	33	1.76
17727925--17727964	16	2.5	16	95	0	71	20	10	27	42	1.83
17727925--17727974	16	3.0	16	88	5	55	22	14	22	42	1.88
17729566--17729604	20	2.0	19	85	5	51	69	15	0	15	1.20
17729863--17729952	20	4.7	20	69	12	71	22	60	1	16	1.43
17730107--17730138	15	2.1	15	94	5	55	3	18	0	78	0.89
17731238--17731318	6	13.8	6	84	1	67	62	14	0	22	1.31
17731606--17731725	38	3.2	38	86	2	170	39	22	10	27	1.87
17731792--17731855	22	2.9	22	83	0	74	28	6	23	42	1.78
17731805--17731931	22	5.8	21	71	9	76	31	9	21	37	1.85
17731813--17731962	44	3.4	44	78	1	149	32	12	20	35	1.89
17732236--17732296	9	6.6	9	71	14	52	42	4	22	29	1.75
17732238--17732278	22	2.0	20	90	9	64	41	7	24	26	1.81
17732237--17732296	18	3.2	18	81	11	59	43	5	23	28	1.74
17732343--17732403	18	3.4	18	83	0	86	39	18	13	29	1.88
17732394--17732438	17	2.6	18	80	16	58	35	20	17	26	1.95
17732504--17732596	18	5.2	18	76	2	71	41	13	10	33	1.80
17732491--17732602	54	2.1	53	82	12	131	41	16	10	30	1.83
17732647--17732732	44	1.9	45	85	2	120	38	12	11	37	1.80
17732786--17732868	38	2.2	36	85	4	103	46	13	7	32	1.70
17733274--17733579	71	4.3	71	87	0	389	45	13	14	27	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17734649--17734731	10	8.5	10	73	18	77	1	15	0	83	0.72
17734649--17734731	19	4.3	19	81	9	96	1	15	0	83	0.72
17734660--17734731	14	4.7	14	75	21	65	0	16	0	83	0.65
17734651--17734698	1	48.0	1	78	0	51	2	8	0	89	0.56
17735957--17736377	138	3.1	136	78	9	396	47	12	12	27	1.78
17737527--17737577	26	1.9	26	88	4	75	60	13	1	23	1.43
17738761--17738799	14	2.8	14	77	14	53	71	0	28	0	0.86
17738952--17739012	26	2.3	26	83	8	70	72	1	24	1	1.03
17739419--17739443	13	1.9	13	100	0	50	40	0	8	52	1.31
17740912--17740969	3	19.3	3	100	0	116	65	0	0	34	0.93
17742040--17742116	38	2.0	38	82	12	95	29	18	11	40	1.86
17742455--17742515	14	4.6	13	82	10	61	80	0	16	3	0.84
17742455--17742525	10	7.2	10	75	13	67	78	0	18	2	0.86
17746042--17746086	16	2.9	16	90	9	67	80	2	17	0	0.82
17746578--17746650	17	4.3	17	70	18	53	75	0	15	9	1.04
17746586--17746651	17	3.9	17	76	4	62	77	0	12	10	1.00
17748335--17748392	25	2.3	25	90	0	89	32	15	17	34	1.91
17750153--17750183	2	15.5	2	100	0	62	48	0	0	51	1.00
17750834--17750867	15	2.2	16	94	5	61	20	0	0	79	0.73
17751099--17751163	17	3.7	18	76	14	64	64	1	12	21	1.35
17752766--17752878	18	6.6	18	72	13	76	23	2	7	65	1.32
17752793--17752875	6	13.8	6	79	0	85	25	2	8	63	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17753862--17753940	39	2.0	41	82	5	99	16	10	2	70	1.25
17754171--17754218	24	2.0	24	87	0	69	27	6	10	56	1.57
17754188--17754237	20	2.6	18	87	12	73	28	4	6	62	1.37
17754279--17754309	16	1.9	16	93	0	53	29	6	9	54	1.57
17756318--17756362	18	2.4	18	81	3	54	11	4	6	77	1.09
17756331--17756376	24	1.9	24	82	8	58	10	4	8	76	1.15
17756640--17756726	34	2.6	35	89	5	126	32	9	10	48	1.69
17767940--17767964	12	2.1	12	100	0	50	8	0	8	84	0.79
17768987--17769052	24	2.8	24	84	11	75	45	1	3	50	1.26
17769995--17770064	27	2.6	27	81	4	79	37	1	1	60	1.15
17771412--17771444	2	17.0	2	93	6	59	51	0	0	48	1.00
17771669--17771701	2	16.5	2	93	0	57	45	0	0	54	0.99
17776883--17776978	48	2.0	49	82	10	117	72	4	3	19	1.14
17777906--17777936	13	2.4	13	94	0	53	70	9	0	19	1.14
17780303--17780363	31	2.0	31	87	6	88	34	11	19	34	1.88
17780971--17781014	14	3.1	14	83	0	52	27	0	6	65	1.17
17782957--17783023	28	2.3	29	80	16	77	46	0	2	50	1.16
17789255--17789294	20	2.0	21	90	5	64	42	0	0	57	0.98
17791880--17791980	53	1.9	53	89	0	157	41	20	9	27	1.84
17792550--17792600	25	2.0	26	85	14	72	15	11	5	66	1.41
17792759--17792821	33	1.9	32	87	12	92	34	11	11	42	1.76
17799499--17799540	18	2.3	18	91	0	66	28	19	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17799511--17799550	18	2.2	18	86	0	53	32	17	7	42	1.77
17801565--17801614	13	4.0	13	75	17	52	18	0	6	76	0.99
17805795--17805826	17	1.9	17	93	6	57	9	3	6	81	0.97
17806037--17806088	10	5.4	10	77	15	56	86	0	11	1	0.65
17806047--17806079	7	4.7	7	85	14	50	87	0	12	0	0.53
17806037--17806087	18	2.9	17	88	11	68	86	0	11	1	0.66
17806037--17806084	13	3.5	14	80	11	55	85	0	12	2	0.69
17806037--17806088	9	5.8	9	82	8	61	86	0	11	1	0.65
17806265--17806367	44	2.3	43	85	6	127	39	19	15	25	1.91
17806289--17806911	95	6.4	97	74	9	421	42	19	12	26	1.86
17806289--17806911	51	12.8	48	77	8	433	42	19	12	26	1.86
17806414--17806862	241	1.9	244	86	3	647	42	20	12	25	1.86
17806340--17806861	146	3.6	144	76	8	437	41	20	12	26	1.87
17816986--17817074	46	1.9	46	93	0	151	26	20	13	39	1.90
17818048--17818074	14	1.9	14	100	0	54	11	0	0	88	0.50
17819291--17819334	22	2.0	22	81	0	52	36	6	0	56	1.26
17819766--17819810	20	2.2	20	88	0	63	11	22	33	33	1.89
17827949--17828003	28	2.0	27	82	13	67	16	7	1	74	1.12
17828327--17828364	20	1.9	20	88	0	58	31	2	2	63	1.22
17831064--17831199	67	2.0	67	89	0	209	37	25	5	30	1.80
17832962--17833153	56	3.4	56	82	2	224	33	26	12	28	1.92
17832883--17833153	111	2.4	111	80	2	310	34	24	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17832883--17833189	111	2.7	112	79	5	282	33	25	11	28	1.91
17833353--17833391	18	2.2	18	95	0	69	48	23	10	17	1.78
17839860--17839996	69	2.0	68	95	1	247	29	15	10	43	1.81
17842338--17842472	65	2.1	65	83	5	166	41	9	15	33	1.80
17842554--17842622	35	2.0	34	88	2	102	39	2	20	37	1.68
17856748--17857246	160	3.1	160	84	4	569	34	9	14	41	1.78
17857771--17857806	19	1.9	19	94	5	65	47	19	11	22	1.80
17859873--17859941	28	2.5	28	85	0	93	49	13	5	31	1.65
17866240--17866375	6	22.2	6	76	10	69	8	36	8	46	1.65
17866304--17866371	18	3.8	18	88	0	91	4	33	14	47	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84