genome.fa.s157.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  26  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5627535--5627577	20	2.2	20	83	4	52	74	6	11	6	1.21
5627815--5627868	21	2.6	20	82	8	63	48	0	3	48	1.19
5634402--5634463	28	2.2	28	100	0	124	64	12	0	22	1.27
5642031--5642060	2	15.0	2	100	0	60	50	0	0	50	1.00
5642910--5642934	2	12.5	2	100	0	50	48	0	0	52	1.00
5658475--5658506	11	2.6	13	80	19	50	0	15	0	84	0.63
5658479--5658516	10	3.7	10	89	10	51	0	15	2	81	0.80
5658851--5658879	4	7.2	4	100	0	58	24	0	0	75	0.80
5663639--5663669	7	4.4	7	100	0	62	12	41	12	32	1.81
5663899--5663938	20	2.0	20	85	0	53	50	0	5	45	1.23
5663870--5664012	34	4.2	34	74	6	114	44	4	3	47	1.39
5663870--5664016	18	8.6	18	69	15	89	45	4	3	46	1.38
5663869--5664019	68	2.2	66	81	5	178	44	3	3	48	1.37
5666365--5666408	20	2.3	19	92	4	70	31	0	0	68	0.90
5666365--5666410	10	4.7	10	81	5	58	34	0	0	65	0.93
5668559--5668634	39	1.9	39	86	5	109	64	1	3	30	1.20
5668893--5668931	19	2.2	18	86	9	53	66	2	2	28	1.18
5669141--5669203	30	2.1	30	84	3	81	28	1	6	63	1.28
5670273--5670355	30	2.9	30	82	8	93	55	1	3	39	1.25
5670544--5670598	2	27.5	2	100	0	110	50	0	0	49	1.00
5670449--5670729	149	1.9	149	98	0	544	44	13	9	32	1.76
5670693--5670729	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5672957--5673020	31	2.1	31	87	0	92	45	9	0	45	1.36
5677794--5678346	276	2.0	275	86	2	770	33	18	20	27	1.96
5680555--5680606	23	2.2	24	82	3	61	57	3	0	38	1.17
5685796--5686062	140	1.9	140	84	3	358	23	11	17	46	1.81
5695847--5695872	2	13.0	2	100	0	52	50	0	0	50	1.00
5702366--5702390	2	12.5	2	100	0	50	52	48	0	0	1.00
5717723--5717842	59	2.0	59	95	0	213	34	0	13	51	1.47
5724348--5724379	16	2.0	16	100	0	64	37	6	25	31	1.81
5727690--5727731	22	1.9	22	90	0	66	45	9	11	33	1.73
5730201--5730242	22	1.9	22	90	0	66	45	9	11	33	1.73
5736855--5736889	18	1.9	18	88	0	52	54	2	0	42	1.15
5746143--5746183	18	2.3	18	87	4	57	43	39	17	0	1.49
5746857--5746908	15	3.5	15	78	0	50	40	32	21	5	1.77
5746884--5746909	9	2.9	9	100	0	52	53	34	11	0	1.37
5749323--5749349	2	13.5	2	100	0	54	48	0	0	51	1.00
5763577--5763910	165	2.0	163	91	2	544	39	12	17	30	1.87
5764027--5764087	27	2.3	27	75	18	65	50	1	1	45	1.21
5765892--5765921	2	15.5	2	93	6	53	53	0	0	46	1.00
5767998--5768040	22	1.9	23	81	13	54	39	6	4	48	1.51
5771195--5771239	22	2.0	22	100	0	90	33	13	13	40	1.83
5780152--5780197	2	23.0	2	86	0	65	50	6	0	43	1.28
5791740--5791805	34	1.9	34	96	0	123	39	19	22	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5793800--5793830	16	1.9	16	93	0	53	35	6	16	41	1.74
5798538--5798564	4	6.8	4	100	0	54	0	0	22	77	0.76
5808468--5808534	22	2.9	23	78	17	68	49	1	0	49	1.10
5811079--5811152	29	2.6	29	79	8	82	45	1	0	52	1.09
5814287--5814333	21	2.3	21	96	3	87	42	19	12	25	1.86
5817119--5817144	7	3.7	7	100	0	52	46	30	23	0	1.53
5818628--5818680	23	2.3	22	78	12	61	43	1	0	54	1.11
5827739--5827764	13	2.0	13	100	0	52	38	7	0	53	1.30
5830964--5830989	2	13.0	2	100	0	52	50	0	0	50	1.00
5842507--5842686	93	1.9	93	98	0	351	10	9	28	52	1.66
5842523--5842713	93	2.1	93	89	4	287	11	9	28	49	1.71
5848336--5848400	34	1.9	34	83	0	85	30	24	13	30	1.94
5859027--5859052	8	3.2	8	100	0	52	26	11	38	23	1.89
5859975--5860023	20	2.4	22	86	10	68	65	10	0	24	1.23
5860839--5860879	12	3.6	12	77	12	50	58	0	0	41	0.98
5860833--5860890	20	3.0	20	80	9	66	58	0	0	41	0.98
5863275--5863342	21	3.3	21	70	25	63	51	1	2	44	1.25
5863276--5863346	22	3.4	20	74	18	65	52	1	2	43	1.24
5863288--5863343	20	2.7	21	74	20	64	51	1	1	44	1.22
5863626--5863666	20	2.1	20	86	4	57	68	2	0	29	1.03
5864810--5864925	13	9.2	13	77	14	102	57	1	0	40	1.09
5864798--5864896	40	2.3	44	79	17	120	55	2	0	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5864796--5864922	26	5.0	26	75	14	106	56	1	0	41	1.08
5864818--5864925	36	3.2	34	76	11	116	58	0	0	40	1.04
5864926--5864977	18	2.9	18	78	21	56	44	1	3	50	1.31
5864937--5865016	18	4.5	18	72	18	62	46	1	1	51	1.17
5864945--5865017	19	4.0	19	70	22	59	45	1	0	53	1.09
5865002--5865059	15	4.2	14	72	26	52	50	1	0	48	1.11
5868601--5868978	198	1.9	195	79	10	421	49	3	7	39	1.46
5869000--5869033	13	2.6	13	85	0	50	73	2	0	23	0.97
5871519--5871563	20	2.3	20	85	7	58	24	2	2	71	1.09
5871815--5871859	21	2.1	22	84	12	58	68	4	0	26	1.08
5872791--5872837	17	3.0	15	76	17	51	23	0	2	74	0.93
5875415--5875503	46	1.9	46	95	0	160	19	10	23	47	1.79
5877168--5877252	31	2.7	31	96	0	152	27	23	27	22	1.99
5880271--5880295	2	12.5	2	100	0	50	52	0	0	48	1.00
5883063--5883103	21	1.9	22	85	5	57	53	0	14	31	1.41
5884040--5884070	2	16.0	2	93	6	55	51	0	0	48	1.00
5899059--5899121	27	2.4	26	86	2	81	36	1	0	61	1.05
5900451--5900597	23	6.5	23	74	11	108	58	3	0	37	1.20
5900507--5900636	35	3.8	36	81	12	132	59	2	1	36	1.20
5900451--5900642	22	8.7	23	68	22	92	59	2	1	36	1.18
5900451--5900636	15	12.3	15	70	15	100	59	2	1	37	1.19
5900529--5900642	31	3.5	31	78	14	124	61	1	1	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5900450--5900642	10	20.9	9	67	21	55	59	2	1	37	1.18
5900678--5900746	36	1.9	36	82	11	88	46	0	0	53	1.00
5902598--5902662	27	2.4	28	80	12	73	47	10	16	24	1.79
5905296--5905341	13	3.5	13	78	0	56	21	4	4	69	1.24
5907017--5907114	36	2.9	33	83	8	124	37	22	14	25	1.92
5907147--5907234	36	2.6	33	79	10	104	37	23	15	22	1.93
5907154--5907223	36	1.9	36	91	0	113	34	24	18	22	1.96
5906999--5907246	123	2.0	123	97	0	469	35	22	16	25	1.95
5908319--5908352	15	2.3	15	94	0	59	91	0	8	0	0.43
5909773--5909809	18	2.1	18	89	0	56	10	0	5	83	0.79
5910255--5910556	165	1.8	166	87	2	455	26	22	10	40	1.87
5910682--5910723	21	2.0	21	90	0	66	73	11	0	14	1.09
5911001--5911063	7	9.5	6	89	10	72	77	0	6	15	0.96
5911001--5911064	20	3.2	20	79	20	73	76	0	6	17	0.98
5917465--5917492	2	14.0	2	100	0	56	50	0	0	50	1.00
5926519--5926549	14	2.1	15	94	5	55	58	0	0	41	0.98
5926568--5926617	21	2.5	19	75	12	55	32	0	0	68	0.90
5927366--5927391	2	13.0	2	100	0	52	50	0	0	50	1.00
5928506--5928584	12	6.5	12	72	13	54	30	1	1	67	1.07
5928527--5928562	17	2.1	17	94	5	63	30	0	0	69	0.89
5938713--5938922	105	2.0	105	96	0	384	38	10	10	40	1.76
5939308--5939348	22	1.9	21	90	5	64	53	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5939385--5939433	14	3.0	18	69	25	54	48	0	0	51	1.00
5946680--5946723	22	2.0	22	91	8	72	45	13	9	31	1.75
5950374--5950432	25	2.4	25	86	5	77	40	18	27	13	1.88
5950580--5950623	22	2.0	22	91	8	72	45	13	6	34	1.70
5960081--5960147	33	2.0	33	91	5	109	32	19	25	22	1.97
5969964--5970122	77	2.1	77	90	2	248	48	11	14	25	1.78
5970185--5970273	32	2.8	32	98	0	169	28	5	19	47	1.72
5973998--5974032	17	2.1	17	89	10	54	37	17	31	14	1.89
5981756--5981821	29	2.3	29	81	5	71	46	3	3	46	1.33
5990762--5990846	19	4.3	19	76	7	71	42	1	0	56	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84