genome.fa.s157.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  48  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11041033--11041096	24	2.6	25	75	5	67	79	1	9	9	1.00
11046977--11047038	26	2.4	25	81	7	70	9	17	32	40	1.82
11047198--11047274	3	25.7	3	94	0	127	32	3	0	63	1.12
11047273--11047303	13	2.3	14	94	5	55	3	12	0	83	0.75
11047273--11047316	15	3.0	15	87	9	56	2	15	0	81	0.78
11047547--11047613	35	1.9	35	90	0	107	26	10	23	38	1.87
11057242--11057288	18	2.6	18	89	0	67	38	17	25	19	1.92
11057677--11057723	23	2.0	23	100	0	94	34	44	0	21	1.52
11065805--11065838	17	2.0	17	100	0	68	41	23	11	23	1.87
11066324--11066374	26	2.0	25	81	11	59	41	15	3	39	1.66
11067166--11067232	35	1.9	35	93	0	116	29	13	19	37	1.90
11068851--11068919	21	3.1	21	83	8	57	20	1	5	72	1.13
11068868--11068919	21	2.4	22	87	6	70	23	0	3	73	1.00
11069060--11069127	25	2.7	25	75	8	75	30	7	8	52	1.60
11075002--11075057	27	2.1	26	80	9	67	35	3	17	42	1.67
11074962--11075082	62	2.0	61	85	11	167	38	4	16	41	1.68
11074962--11075104	61	2.3	62	81	13	156	36	4	18	41	1.70
11082787--11082856	35	2.0	35	100	0	140	28	11	20	40	1.87
11083496--11083545	25	1.9	27	88	8	77	46	2	8	44	1.44
11085512--11085590	41	1.9	41	87	5	115	31	20	7	40	1.80
11086935--11086959	9	2.8	9	100	0	50	36	24	24	16	1.94
11090090--11090258	57	3.0	56	73	17	141	40	7	14	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11091218--11091262	23	2.0	23	100	0	90	26	13	24	35	1.92
11091539--11091605	20	3.4	20	72	12	66	19	2	28	49	1.63
11091681--11091726	19	2.4	19	82	7	58	23	13	26	36	1.91
11091746--11091785	12	3.2	12	82	6	53	22	10	17	50	1.76
11092055--11092085	3	10.3	3	92	0	53	61	0	0	38	0.96
11092084--11092131	3	16.0	3	95	0	87	31	0	2	66	1.03
11093849--11093924	15	4.8	15	79	12	73	19	0	2	77	0.88
11093860--11093924	34	2.0	32	82	11	78	20	0	3	76	0.91
11094307--11094413	46	2.3	47	81	3	126	50	14	5	28	1.66
11094307--11094430	46	2.7	46	81	3	124	48	15	7	29	1.71
11094772--11094909	40	3.4	39	81	4	141	35	10	14	39	1.80
11094772--11094934	40	4.1	40	80	4	121	36	12	13	38	1.82
11095057--11095112	23	2.5	23	81	13	64	33	17	0	48	1.48
11096524--11096572	18	2.7	19	81	6	57	0	24	0	75	0.80
11096932--11097020	25	3.4	25	78	17	76	5	22	0	71	1.06
11097354--11097413	13	4.9	13	78	21	51	6	13	13	66	1.43
11100242--11100280	3	13.0	3	100	0	78	66	0	0	33	0.92
11102031--11102082	19	2.7	19	91	5	79	19	15	17	48	1.82
11104821--11104879	31	1.9	31	89	0	91	37	8	10	44	1.69
11107256--11107320	33	2.0	33	87	0	94	43	10	0	46	1.38
11109665--11109722	28	2.1	28	90	6	91	34	1	5	58	1.30
11117563--11117709	72	2.0	72	100	0	294	40	10	9	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11135435--11135558	34	3.6	34	80	6	99	36	13	14	35	1.86
11135481--11135602	34	3.6	34	83	4	140	39	14	13	31	1.86
11137131--11137389	140	1.8	138	80	8	308	43	16	7	32	1.77
11143646--11144455	63	13.0	60	65	16	199	36	12	10	39	1.79
11144454--11144485	15	2.1	15	100	0	64	40	12	12	34	1.81
11144269--11144666	200	2.0	200	85	3	530	36	12	10	40	1.78
11148699--11148768	35	2.0	35	88	0	104	37	18	10	34	1.84
11162098--11162149	25	2.0	26	92	3	88	34	11	13	40	1.81
11163850--11163898	24	2.0	24	96	0	89	36	32	6	24	1.80
11179847--11180005	81	2.0	81	88	5	241	32	20	18	28	1.96
11181721--11181815	48	2.0	48	97	0	181	49	10	11	28	1.72
11185083--11185125	16	2.5	17	85	11	52	60	2	2	34	1.22
11185153--11185281	33	4.0	32	75	9	111	49	6	4	38	1.51
11185347--11185391	24	1.9	24	81	4	56	60	6	2	31	1.35
11185707--11185748	20	2.1	20	86	8	59	57	0	2	40	1.12
11196562--11196663	51	2.0	51	100	0	204	33	9	13	43	1.77
11218684--11218741	30	2.0	27	83	9	71	58	0	1	39	1.08
11218736--11218785	19	2.6	19	78	12	57	56	2	0	42	1.11
11218881--11218906	5	5.2	5	100	0	52	76	0	0	23	0.78
11219431--11219493	27	2.4	26	89	2	90	52	0	12	34	1.40
11222568--11222592	12	2.1	12	100	0	50	68	0	0	32	0.90
11224779--11224805	4	6.8	4	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11225556--11225600	22	2.0	22	100	0	90	17	26	8	46	1.78
11229651--11229696	13	3.1	15	78	15	60	21	0	32	45	1.52
11229649--11229778	30	4.4	30	72	13	119	21	1	30	46	1.60
11229735--11229820	14	5.9	14	74	10	66	19	2	29	48	1.61
11229636--11229777	14	9.8	14	70	13	65	21	2	28	47	1.62
11229649--11230111	29	15.4	28	66	16	116	21	2	27	47	1.64
11229626--11229805	88	2.0	88	79	8	188	21	2	28	47	1.65
11229794--11229877	35	2.4	35	84	6	98	20	2	23	53	1.57
11229859--11230091	59	4.0	60	73	9	196	21	2	27	48	1.63
11229942--11230019	14	5.5	14	69	14	52	21	3	25	48	1.67
11229860--11230098	29	8.2	30	72	10	154	21	2	27	48	1.63
11231605--11231656	16	3.3	16	77	17	56	40	0	0	59	0.97
11231903--11232242	37	9.2	36	71	8	193	47	17	17	16	1.82
11232205--11232542	132	2.6	131	79	2	354	42	16	16	23	1.88
11232528--11232689	88	1.8	88	85	0	225	41	16	19	22	1.89
11232528--11232722	88	2.2	88	82	1	221	41	15	18	24	1.89
11232306--11232923	330	1.9	329	84	4	825	43	16	16	23	1.87
11232782--11233192	220	1.9	221	83	2	549	43	16	15	24	1.86
11232769--11233192	110	3.8	110	76	6	374	43	16	16	24	1.87
11234607--11234648	9	4.3	10	80	14	52	0	2	7	90	0.53
11234602--11234637	17	2.1	18	89	5	56	0	8	8	83	0.82
11234610--11234647	20	2.0	20	94	5	69	0	2	7	89	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11235047--11235104	30	1.9	30	89	3	89	6	5	5	82	0.93
11235047--11235105	10	5.9	10	76	7	57	6	5	5	83	0.92
11241729--11241773	15	3.1	15	72	21	51	22	0	31	46	1.52
11241729--11241816	28	3.1	28	76	14	90	18	1	30	50	1.54
11241790--11242055	30	9.2	30	73	14	136	19	3	27	49	1.65
11241887--11241939	21	2.5	21	87	6	72	18	3	20	56	1.57
11241930--11241985	16	3.7	15	76	9	60	17	1	33	46	1.59
11241783--11242175	145	2.7	146	79	11	373	19	3	28	48	1.65
11241933--11242156	86	2.5	87	80	9	267	19	3	30	46	1.66
11241923--11242156	30	8.0	30	78	8	214	18	3	29	48	1.66
11243295--11243321	14	1.9	14	100	0	54	14	0	11	74	1.08
11243664--11243711	23	2.1	23	84	7	62	31	0	2	66	1.03
11247106--11247169	25	2.5	26	80	14	80	64	1	0	34	1.03
11247123--11247164	20	2.0	21	82	13	52	61	0	0	38	0.96
11247751--11247785	17	2.1	17	88	0	52	40	11	5	42	1.65
11248036--11248082	20	2.4	20	82	3	60	51	6	2	40	1.39
11248243--11248304	21	2.9	21	80	9	72	62	0	0	37	0.95
11248279--11248312	17	2.1	17	88	5	52	58	0	0	41	0.98
11248933--11248995	31	2.2	29	80	11	67	42	9	6	41	1.63
11249166--11249267	40	2.6	40	80	10	120	49	6	8	35	1.61
11249299--11249355	21	2.9	21	73	21	61	59	0	1	38	1.08
11252680--11252710	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11253699--11253731	17	2.0	17	88	5	50	45	6	0	48	1.27
11255050--11255077	3	9.3	3	100	0	56	67	0	0	32	0.91
11258002--11258034	2	16.5	2	93	0	57	48	0	0	51	1.00
11261574--11261642	4	17.2	4	90	0	102	56	0	0	43	0.99
11261574--11261642	6	11.5	6	90	0	102	56	0	0	43	0.99
11261574--11261642	10	6.9	10	93	0	102	56	0	0	43	0.99
11261790--11261832	13	3.5	13	75	12	54	13	30	2	53	1.53
11261784--11261832	24	2.0	24	100	0	98	16	28	4	51	1.63
11264512--11264552	19	2.2	19	86	0	55	53	7	2	36	1.42
11264628--11264692	30	2.2	29	81	10	69	60	3	1	35	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84