genome.fa.s157.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  45  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10504655--10504777	22	5.8	21	80	4	88	37	11	5	45	1.64
10507176--10507214	17	2.3	17	81	0	51	51	2	2	43	1.29
10508463--10508533	24	2.9	24	75	8	63	50	1	4	43	1.30
10517688--10517729	18	2.4	18	80	7	52	9	14	4	71	1.28
10517022--10519050	721	2.8	712	78	7	1942	30	11	15	42	1.82
10521433--10521470	3	12.3	3	94	5	67	31	2	0	65	1.06
10525229--10525270	23	1.9	22	85	9	59	35	4	16	42	1.69
10531961--10532000	21	2.0	20	86	13	57	10	15	10	65	1.48
10533187--10535404	390	5.7	390	80	6	2236	34	11	8	45	1.70
10533187--10535404	778	2.8	773	85	5	2786	34	11	8	45	1.70
10536817--10537142	167	2.0	167	99	0	643	40	11	13	34	1.81
10537060--10537204	47	3.2	47	73	25	173	41	15	13	30	1.85
10537053--10537232	90	2.0	90	100	0	360	41	15	13	30	1.85
10542123--10542165	16	2.7	16	85	0	50	74	4	0	20	1.00
10543040--10543170	5	24.6	5	76	18	81	60	4	1	33	1.26
10543036--10543204	51	3.3	49	81	9	189	59	5	2	33	1.33
10543036--10543214	3	63.7	3	70	16	116	59	5	2	32	1.35
10545501--10545532	13	2.5	13	94	0	55	78	3	0	18	0.89
10546020--10546060	21	2.0	20	86	13	57	58	17	2	21	1.50
10546532--10546931	43	9.4	43	85	2	483	43	19	11	25	1.84
10546527--10546931	87	4.8	85	85	3	498	43	19	11	25	1.84
10546532--10546918	130	3.0	129	84	4	518	43	19	11	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10547968--10548013	24	1.9	24	86	0	65	10	15	0	73	1.08
10547966--10548019	24	2.2	24	76	0	63	9	12	0	77	0.98
10548174--10548249	11	6.5	11	72	19	55	7	10	0	81	0.87
10548174--10548215	15	3.0	14	86	6	50	7	4	0	88	0.64
10558621--10558750	57	2.3	55	83	8	149	30	15	7	46	1.74
10560333--10560439	48	2.3	45	77	4	115	17	18	12	51	1.76
10562930--10562972	21	2.0	21	95	0	77	37	2	18	41	1.63
10569685--10570228	270	2.0	270	97	0	1025	41	13	14	30	1.85
10571824--10571862	20	2.0	20	85	10	53	20	5	5	69	1.28
10572306--10572334	9	3.2	9	100	0	58	79	0	10	10	0.94
10572327--10572354	7	4.0	7	100	0	56	85	0	0	14	0.59
10572350--10572460	3	41.3	3	66	21	59	57	2	4	35	1.33
10572363--10572467	36	2.9	36	78	10	124	56	3	3	36	1.36
10572378--10572455	41	1.9	40	84	7	104	57	3	3	34	1.35
10572363--10572467	5	20.4	5	78	13	106	56	3	3	36	1.36
10572964--10573009	22	2.1	21	84	4	56	15	4	13	67	1.38
10574805--10574856	22	2.5	19	75	22	50	40	0	1	57	1.10
10575976--10576024	23	2.2	22	82	10	55	79	0	10	10	0.93
10576801--10576844	19	2.3	19	88	7	63	40	4	2	52	1.34
10583038--10583073	7	5.1	7	100	0	72	27	0	0	72	0.85
10582423--10583567	627	1.8	630	90	2	1843	47	7	2	41	1.47
10583266--10583345	29	2.9	28	75	12	67	65	7	0	27	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10585248--10585281	12	2.8	12	86	0	50	70	0	2	26	1.01
10587277--10587306	16	1.9	15	93	6	51	83	0	3	13	0.77
10587280--10587322	14	2.8	15	82	13	52	81	4	4	9	0.97
10588531--10588558	14	2.0	14	100	0	56	35	14	0	50	1.43
10589338--10589381	22	2.0	21	83	16	54	31	13	9	45	1.75
10591902--10591953	25	2.0	26	92	3	88	32	21	17	28	1.96
10596556--10596610	27	2.0	28	89	3	85	32	0	7	60	1.24
10597021--10597162	22	6.5	21	72	6	59	35	7	5	51	1.53
10597005--10597118	44	2.6	44	76	5	106	37	7	6	49	1.55
10597049--10597172	66	1.9	66	81	0	149	37	7	5	50	1.54
10597057--10597263	44	4.6	45	71	11	120	38	7	5	48	1.55
10597057--10597268	22	9.4	22	71	10	106	39	7	5	47	1.56
10597102--10597243	71	2.0	71	82	5	171	37	7	6	49	1.56
10597298--10597375	22	3.6	21	75	6	75	43	2	5	48	1.38
10597347--10597406	22	2.7	22	82	10	77	33	6	5	55	1.48
10597586--10597666	22	3.5	22	73	15	65	40	9	4	44	1.59
10597560--10597717	44	3.5	44	74	8	129	40	10	5	44	1.60
10597633--10597724	22	4.2	22	80	0	103	35	8	4	51	1.53
10597659--10597750	44	2.1	44	82	8	107	36	9	4	48	1.56
10598034--10598183	22	6.8	22	76	3	115	36	4	11	48	1.60
10598251--10598317	22	3.0	21	78	4	62	35	4	7	52	1.50
10598273--10598430	41	3.7	41	66	15	113	36	4	5	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10598316--10598430	22	5.2	22	67	15	67	37	4	4	53	1.40
10598329--10598377	25	2.0	25	83	0	62	34	6	4	55	1.44
10598266--10598444	88	2.0	88	98	0	349	35	4	5	54	1.42
10598356--10598420	19	3.3	19	70	19	51	36	3	4	55	1.36
10598316--10598520	44	4.7	44	72	13	138	36	6	4	52	1.48
10598266--10598471	88	2.3	89	91	4	323	35	4	5	54	1.45
10598266--10598520	88	2.9	88	87	5	286	35	6	5	52	1.49
10598758--10598840	22	3.8	22	81	0	85	40	6	4	48	1.49
10598756--10598840	44	1.9	44	82	0	107	40	5	5	48	1.52
10598758--10598809	11	4.7	11	75	0	50	40	3	1	53	1.30
10598967--10599033	22	3.1	22	78	2	73	37	5	4	52	1.46
10599586--10599643	24	2.3	25	79	5	64	60	3	1	34	1.24
10601435--10601480	17	2.7	17	79	0	56	47	4	0	47	1.21
10601943--10602046	54	1.9	54	82	3	129	46	12	7	33	1.70
10602777--10602867	39	2.4	38	81	1	101	37	5	5	51	1.48
10602613--10603214	326	1.9	323	89	3	949	35	2	12	50	1.52
10605024--10605234	60	3.6	58	89	5	300	43	5	12	38	1.65
10605144--10605234	27	3.2	27	65	22	69	41	4	14	39	1.65
10605025--10605234	59	3.6	59	88	5	300	43	5	12	38	1.66
10609188--10609341	8	18.5	8	73	19	111	71	1	16	10	1.22
10609207--10609341	17	8.0	17	77	16	95	74	0	14	10	1.12
10609235--10609341	33	3.3	34	82	7	134	73	0	14	11	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10610995--10611167	41	4.1	42	82	5	183	23	12	21	42	1.87
10611002--10611207	41	4.9	42	79	7	168	22	13	19	44	1.85
10613290--10613379	27	3.2	27	66	22	69	42	4	13	40	1.64
10613169--10613379	58	3.6	59	85	11	283	42	4	11	40	1.63
10619932--10619969	13	2.9	13	84	11	51	13	0	21	65	1.26
10620783--10620817	18	1.9	18	88	0	52	42	2	5	48	1.41
10620878--10620950	20	3.7	19	74	7	56	35	12	6	45	1.69
10620948--10621113	87	1.9	87	85	4	228	37	10	10	41	1.74
10624531--10624616	28	3.1	28	73	9	70	45	1	1	52	1.16
10627390--10627423	17	2.0	17	100	0	68	17	5	23	52	1.66
10631581--10631642	29	2.2	27	81	16	72	43	0	4	51	1.23
10631987--10632038	18	3.2	16	84	13	63	78	0	13	7	0.94
10632358--10632401	23	1.9	23	90	0	70	38	27	0	34	1.57
10633159--10633210	21	2.5	21	87	0	77	44	0	23	32	1.54
10633422--10633487	22	3.0	22	86	6	98	83	0	12	4	0.79
10633432--10633496	29	2.3	28	81	2	76	80	0	12	7	0.91
10635316--10635357	17	2.4	18	88	11	61	59	0	2	38	1.10
10635316--10635357	18	2.4	17	84	11	50	59	0	2	38	1.10
10637589--10637626	17	2.4	17	86	8	53	18	0	5	76	0.97
10637603--10637646	4	10.8	4	82	2	52	22	0	4	72	1.02
10642843--10642873	16	1.9	16	93	0	53	58	0	22	19	1.40
10646491--10646522	6	5.5	6	96	3	57	87	12	0	0	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10647426--10647474	24	2.0	25	84	4	64	30	12	26	30	1.92
10647931--10648037	43	2.4	44	83	7	137	34	13	9	42	1.76
10647931--10648097	87	1.9	88	81	8	207	31	12	11	43	1.79
10647930--10648120	43	4.4	42	76	9	125	32	12	11	43	1.78
10648165--10648263	51	1.9	51	83	0	126	26	8	17	48	1.74
10648526--10648582	24	2.4	24	80	8	64	35	0	7	57	1.26
10648548--10648600	18	2.9	18	74	0	52	33	0	7	58	1.26
10648567--10648594	12	2.3	12	100	0	56	46	0	0	53	1.00
10648639--10648675	9	4.2	9	83	16	51	75	2	0	21	0.92
10648639--10648675	16	2.2	17	95	4	67	75	2	0	21	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84