genome.fa.s157.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  78  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16839727--16839753	11	2.5	11	100	0	54	22	11	7	59	1.56
16840328--16840352	13	1.9	13	100	0	50	20	0	0	80	0.72
16841715--16841773	11	5.2	11	75	18	50	35	0	0	64	0.94
16841737--16841786	17	2.9	17	85	5	57	40	0	0	60	0.97
16841715--16841772	17	3.4	17	81	15	66	34	0	0	65	0.93
16843563--16843601	12	3.2	12	92	0	60	0	12	35	51	1.40
16843566--16843600	15	2.3	15	90	0	52	0	8	37	54	1.31
16844033--16844109	38	2.0	38	100	0	154	48	23	10	18	1.78
16849920--16850025	55	1.9	55	82	3	133	42	21	6	29	1.78
16851709--16851753	23	2.0	22	91	4	72	26	0	0	73	0.84
16851713--16851761	22	2.2	23	81	3	55	34	0	0	65	0.93
16851767--16851793	5	5.4	5	100	0	54	40	0	0	59	0.98
16860687--16860717	2	15.5	2	100	0	62	51	48	0	0	1.00
16860717--16860741	2	12.5	2	100	0	50	52	0	0	48	1.00
16861878--16861926	23	2.1	24	85	7	66	46	0	0	53	1.00
16862093--16862138	20	2.2	21	88	3	67	45	2	2	50	1.26
16863298--16863331	17	1.9	18	88	5	52	55	11	0	32	1.36
16868057--16868176	63	1.9	63	96	0	222	45	15	6	33	1.72
16873639--16873716	39	2.0	39	100	0	156	41	17	17	23	1.91
16880005--16880035	15	2.1	15	94	5	55	35	0	6	58	1.24
16881082--16881131	22	2.3	21	76	10	55	58	0	2	40	1.10
16881756--16881810	27	2.0	27	86	10	76	56	3	0	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16881896--16881989	48	2.0	47	81	6	109	43	5	6	44	1.52
16888137--16888171	17	2.0	18	88	5	54	37	0	2	60	1.12
16888134--16888219	44	2.0	44	86	4	120	32	3	2	61	1.25
16888224--16888308	24	3.4	25	81	12	86	32	4	2	60	1.30
16888249--16888305	26	2.2	26	84	6	71	29	5	1	63	1.27
16895794--16895877	37	2.3	37	79	8	91	59	1	0	39	1.05
16897298--16897342	16	2.7	16	82	6	54	62	0	0	37	0.96
16897275--16897346	30	2.4	30	76	2	74	59	0	0	40	0.97
16897337--16897369	11	2.8	12	86	9	50	75	0	0	24	0.80
16899069--16899126	24	2.3	27	85	8	77	63	6	0	29	1.20
16899066--16899129	27	2.3	30	75	22	77	62	6	0	31	1.20
16900844--16900889	24	1.9	24	86	0	65	50	2	0	47	1.13
16901038--16901088	19	2.6	20	81	9	61	52	0	3	43	1.19
16901947--16901976	3	10.0	3	100	0	60	33	0	0	66	0.92
16901899--16901976	21	3.7	21	82	0	84	37	5	0	57	1.21
16903043--16903098	19	3.1	17	82	15	60	64	1	0	33	1.04
16904999--16905067	25	2.7	25	93	2	111	30	11	13	44	1.78
16911758--16911798	16	2.6	16	84	3	57	65	0	0	34	0.93
16911758--16911799	22	2.0	21	81	13	50	64	0	0	35	0.94
16912019--16912064	24	1.9	24	86	0	65	52	0	0	47	1.00
16912208--16912259	20	2.6	20	84	0	68	51	0	1	46	1.12
16912937--16912979	18	2.4	18	80	7	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16915830--16915870	20	2.0	21	85	4	57	48	0	0	51	1.00
16935947--16935976	14	2.1	15	93	6	53	83	3	0	13	0.77
16942010--16942050	19	2.1	20	90	4	66	51	0	0	48	1.00
16944853--16944895	19	2.3	19	83	0	50	46	4	2	46	1.36
16954142--16954194	27	2.0	26	85	10	72	52	0	3	43	1.19
16954495--16954533	19	2.1	19	90	0	60	30	0	2	66	1.05
16954540--16954610	28	2.4	28	81	9	79	54	0	1	43	1.08
16954548--16954610	28	2.3	27	86	8	83	53	0	1	44	1.10
16954765--16954819	24	2.4	23	84	6	67	74	1	3	20	1.06
16966592--16966728	71	2.0	69	84	11	181	35	8	9	46	1.67
16979140--16979200	21	3.0	21	88	7	81	52	0	1	45	1.10
16981699--16981733	15	2.3	15	90	5	52	11	11	2	74	1.18
16983278--16984693	709	2.0	710	82	4	1725	32	12	15	39	1.85
16986477--16986916	227	1.9	227	88	0	666	42	9	6	41	1.63
16987854--16987899	22	2.0	22	83	4	56	69	0	6	23	1.11
16992428--16992469	20	2.3	18	88	12	59	76	0	11	11	1.03
16992428--16992473	19	2.3	20	85	3	58	76	0	13	10	1.03
16992428--16992470	18	2.2	20	88	8	63	76	0	11	11	1.02
16992682--16992720	18	2.1	19	95	4	71	71	2	20	5	1.17
16993290--16993386	34	2.9	34	77	0	104	50	1	4	44	1.28
16994603--16994659	21	2.6	23	86	5	82	47	3	0	49	1.18
16994603--16994667	21	2.9	22	81	9	78	44	3	1	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16994605--16994888	143	2.0	144	83	10	361	40	3	6	49	1.47
16994864--16994898	2	17.5	2	100	0	70	48	0	0	51	1.00
16997188--16997219	16	2.0	16	93	0	55	25	28	15	31	1.96
17004369--17004745	203	1.9	203	99	0	745	22	17	25	34	1.96
17011425--17011459	18	1.9	18	100	0	70	62	5	5	25	1.40
17014367--17014394	1	28.0	1	100	0	56	0	0	0	100	0.00
17014517--17014569	22	2.4	22	87	6	81	47	0	0	52	1.00
17014774--17014817	20	2.2	20	84	8	54	50	0	0	50	1.00
17034258--17034298	3	13.7	3	100	0	82	34	0	0	65	0.93
17040659--17040864	92	2.2	92	87	0	297	35	5	11	47	1.63
17041095--17041384	147	2.0	148	93	0	501	40	7	7	44	1.61
17042185--17042213	2	15.0	2	92	7	51	48	0	0	51	1.00
17043911--17043981	34	2.1	34	81	5	81	43	19	4	32	1.70
17047544--17047617	32	2.3	32	82	11	82	35	5	12	47	1.64
17048505--17048534	6	5.0	6	91	0	51	33	30	16	20	1.94
17049034--17049136	30	3.5	30	77	2	102	40	11	2	44	1.56
17051955--17052023	15	4.7	15	73	10	52	60	0	0	39	0.97
17051972--17052031	29	2.1	29	90	6	95	60	0	0	40	0.97
17053561--17053603	20	2.3	19	84	11	61	46	4	4	44	1.45
17056145--17056191	22	2.2	23	85	11	64	14	4	4	76	1.09
17056176--17056212	13	2.7	14	88	12	51	18	0	0	81	0.70
17058193--17058218	7	3.7	7	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17060603--17060801	99	2.0	100	94	1	346	26	15	9	48	1.75
17060792--17060876	12	7.6	12	75	12	58	30	4	2	62	1.28
17060826--17060851	5	5.2	5	100	0	52	38	0	0	61	0.96
17060843--17060901	27	2.2	26	82	11	66	20	6	1	71	1.18
17060830--17060961	5	24.0	5	73	19	54	21	7	1	69	1.21
17060872--17060946	23	3.3	23	72	20	68	17	9	0	73	1.09
17060849--17060930	32	2.7	29	74	22	78	19	9	1	69	1.23
17060919--17060972	22	2.5	22	84	0	72	16	7	3	72	1.22
17060934--17060970	15	2.3	17	86	9	51	18	5	5	70	1.27
17064312--17064486	40	4.3	41	82	2	167	38	7	16	37	1.77
17064317--17064470	81	1.9	81	82	1	193	38	7	15	37	1.77
17064540--17064590	23	2.3	23	83	6	61	29	13	3	52	1.58
17064808--17064842	17	1.9	18	88	11	54	31	11	8	48	1.69
17067623--17067697	5	14.6	5	70	25	50	74	4	1	20	1.05
17067623--17067689	17	3.8	17	76	13	64	73	4	1	20	1.09
17067647--17067697	13	3.7	13	80	12	57	78	3	0	17	0.90
17067675--17067712	19	2.0	20	89	5	60	84	0	5	10	0.77
17067642--17067714	35	2.1	35	82	7	87	79	2	2	15	0.96
17068399--17068521	51	2.4	51	83	1	138	36	17	7	39	1.77
17069268--17069424	86	1.8	85	82	9	203	37	14	17	30	1.90
17069316--17069569	86	3.0	85	80	3	249	36	13	17	32	1.88
17069536--17069578	18	2.6	16	81	7	50	32	13	13	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17070994--17071026	16	2.2	16	89	10	52	3	15	0	81	0.80
17074702--17074794	20	4.8	18	79	19	82	72	2	1	24	1.03
17074726--17074790	14	4.8	13	80	17	71	73	3	0	23	0.97
17074702--17074799	39	2.5	38	81	14	110	72	2	2	23	1.06
17075437--17075583	51	2.9	51	82	1	168	36	20	6	37	1.78
17078351--17078424	31	2.3	31	79	9	78	74	1	5	18	1.08
17078364--17078422	24	2.7	21	74	20	57	76	0	6	16	1.00
17080223--17080262	19	2.0	20	85	4	55	67	12	12	7	1.41
17083131--17083164	16	2.1	17	94	5	61	85	0	8	5	0.75
17084760--17085088	169	2.0	168	82	7	409	30	16	13	39	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84