genome.fa.s157.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  58  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13093189--13093229	17	2.3	18	88	12	59	4	4	9	80	1.00
13095497--13095562	8	8.4	8	75	14	57	81	0	16	1	0.76
13095497--13095562	9	7.2	9	75	14	64	81	0	16	1	0.76
13095497--13095562	18	3.6	17	84	10	78	81	0	16	1	0.76
13095561--13095607	3	15.7	3	90	0	76	63	0	4	31	1.13
13097297--13097479	78	2.4	76	83	8	235	24	9	13	53	1.68
13098200--13098268	35	2.0	35	88	0	102	47	13	11	27	1.76
13107145--13107187	8	5.4	8	78	10	52	83	2	0	13	0.74
13107516--13107562	17	2.8	17	78	18	53	80	6	2	10	0.96
13108291--13108341	13	3.5	15	82	15	54	76	1	1	19	0.98
13108312--13108344	17	1.9	17	93	0	57	72	3	6	18	1.18
13109407--13109457	18	2.7	19	76	17	52	80	9	3	5	1.01
13110039--13110127	41	2.1	41	85	6	117	58	0	1	40	1.05
13112909--13112939	4	7.8	4	92	0	53	74	0	3	22	0.96
13113884--13113941	15	3.8	15	83	2	71	72	3	3	20	1.14
13113857--13113941	30	2.8	30	83	13	104	69	2	5	22	1.22
13113881--13114011	8	17.3	7	67	19	52	66	3	5	25	1.27
13114263--13114459	88	2.2	88	86	0	268	42	18	12	26	1.85
13114263--13114485	44	5.1	44	76	1	189	43	17	12	26	1.84
13114263--13114481	88	2.5	88	83	1	260	43	18	12	26	1.85
13115089--13115131	18	2.4	17	81	14	50	32	9	0	58	1.30
13122970--13123027	22	2.8	21	73	5	55	46	17	1	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13126197--13126225	13	2.3	13	94	5	51	17	3	0	79	0.87
13127880--13128069	3	64.3	3	68	19	80	65	3	4	26	1.27
13127889--13128000	19	6.2	18	73	20	92	68	2	5	23	1.23
13127932--13127975	16	2.8	17	83	13	58	70	2	2	25	1.10
13127880--13128065	54	3.4	52	74	17	146	66	3	4	25	1.27
13127886--13127995	11	9.4	11	72	11	58	69	2	4	23	1.20
13136354--13136389	17	2.0	19	89	10	58	47	0	2	50	1.15
13136703--13136738	19	1.9	19	88	5	56	36	11	0	52	1.37
13138486--13138582	32	3.1	31	77	7	106	42	3	5	49	1.40
13145446--13145497	21	2.5	21	90	0	77	51	1	3	42	1.31
13145441--13145497	24	2.4	25	80	14	66	52	1	3	42	1.28
13146167--13146236	35	2.0	35	88	5	106	40	17	8	34	1.80
13147574--13147626	26	2.0	26	92	0	88	58	0	0	41	0.98
13157266--13157675	72	5.6	72	73	9	272	46	3	8	41	1.51
13158015--13158099	44	1.9	45	90	2	136	45	11	2	40	1.53
13158503--13158547	18	2.5	18	85	7	56	62	0	2	35	1.08
13158639--13158698	27	2.1	28	84	6	77	56	0	1	41	1.09
13158649--13158703	27	2.0	27	89	6	85	50	0	1	47	1.11
13158661--13158701	19	2.1	20	86	4	57	51	0	2	46	1.14
13158706--13158762	24	2.3	25	82	14	66	54	1	1	42	1.21
13158757--13158814	17	3.5	17	83	9	66	48	0	0	51	1.00
13160257--13160300	22	2.0	23	81	4	54	68	2	11	18	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13160665--13160707	14	2.9	15	82	10	52	48	0	2	48	1.14
13163387--13163431	21	2.1	21	84	8	56	37	11	8	42	1.72
13165652--13165731	21	4.0	21	69	18	80	25	30	12	32	1.92
13174719--13175094	71	5.3	71	77	5	319	48	5	8	38	1.55
13174828--13175092	143	1.9	142	80	4	309	48	5	6	39	1.53
13174719--13175096	72	5.3	72	79	3	336	48	5	8	37	1.56
13176456--13176493	20	1.9	20	84	10	51	42	5	10	42	1.62
13176330--13176489	73	2.2	74	81	7	184	46	3	10	39	1.55
13176596--13176850	73	3.5	73	81	5	287	49	5	8	36	1.58
13176735--13176980	112	2.2	113	79	6	270	49	7	8	34	1.61
13183519--13183548	13	2.3	13	94	0	51	46	0	3	50	1.18
13183567--13183639	32	2.2	32	79	13	78	30	4	10	54	1.54
13183663--13183718	26	2.2	26	87	3	78	53	1	3	41	1.29
13183692--13183732	16	2.7	15	85	7	55	48	0	4	46	1.23
13186600--13186685	26	3.3	26	73	3	84	23	19	24	32	1.98
13186725--13186838	59	1.9	60	80	8	135	16	7	4	71	1.27
13187370--13187411	19	2.3	18	88	8	66	21	7	23	47	1.75
13187685--13187744	9	6.3	9	75	11	57	13	6	0	80	0.91
13187785--13187865	27	3.1	26	75	15	67	79	0	9	11	0.95
13198023--13198138	46	2.6	45	81	4	126	50	15	17	17	1.79
13198651--13198796	41	3.6	41	77	8	129	30	13	20	35	1.91
13199061--13199368	116	2.6	117	77	4	325	24	22	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13199061--13199656	117	5.1	116	74	8	344	24	22	15	38	1.92
13200009--13200079	26	2.7	26	73	0	70	23	22	23	29	1.99
13205369--13205402	16	2.1	16	88	0	50	20	20	20	38	1.94
13205721--13205957	44	5.5	43	77	5	210	23	13	19	43	1.87
13205973--13206004	12	2.7	12	95	0	55	90	9	0	0	0.45
13205973--13206004	15	2.2	14	94	5	55	90	9	0	0	0.45
13206142--13206298	10	16.4	9	70	18	70	28	2	1	67	1.14
13206144--13206293	3	47.7	3	75	17	103	29	2	2	66	1.17
13206175--13206287	14	8.4	13	74	21	54	30	2	0	66	1.11
13206184--13206288	4	28.5	4	71	11	50	29	2	0	66	1.12
13206175--13206288	38	2.9	37	79	10	106	29	2	0	66	1.11
13207116--13207154	3	12.7	3	94	5	69	30	0	2	66	1.05
13207232--13207366	65	2.1	65	82	6	159	49	6	8	34	1.60
13207250--13207376	65	1.9	66	84	4	168	45	6	9	38	1.62
13207374--13207603	59	3.8	58	76	13	187	47	6	12	33	1.66
13207507--13207645	59	2.4	55	82	8	145	46	8	15	30	1.75
13211077--13211127	26	2.0	26	96	0	93	37	13	11	37	1.82
13216827--13216869	9	4.9	9	81	16	54	81	0	16	2	0.79
13216825--13216861	16	2.2	17	95	4	67	81	0	16	2	0.81
13216818--13216873	10	5.6	10	79	8	69	83	0	14	1	0.72
13217445--13217491	24	2.0	23	84	12	60	63	12	2	21	1.39
13217493--13217537	20	2.2	21	88	4	65	55	8	4	31	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13217515--13217616	30	3.5	29	69	20	79	57	11	3	26	1.51
13219064--13219117	13	4.2	13	81	6	65	79	7	0	12	0.92
13220245--13220320	39	1.9	39	86	5	109	32	21	14	31	1.93
13224554--13224581	14	2.0	14	100	0	56	21	14	7	57	1.61
13225912--13225960	2	24.0	2	79	4	53	40	6	4	48	1.47
13226288--13226326	19	2.1	19	85	9	53	28	10	12	48	1.74
13228713--13228745	3	11.0	3	93	0	57	30	0	3	66	1.06
13231795--13231984	69	2.7	69	76	8	170	48	11	17	22	1.78
13231619--13232331	35	20.4	35	71	13	212	46	10	19	23	1.80
13232030--13232365	70	4.8	68	72	12	195	45	10	19	24	1.81
13232303--13232438	35	3.9	35	75	1	101	46	12	19	22	1.83
13232177--13232365	105	1.8	105	82	4	247	45	8	21	24	1.79
13232310--13232411	36	2.9	35	79	1	114	47	9	19	23	1.79
13232389--13232467	35	2.3	34	82	8	88	44	13	21	20	1.86
13233967--13234027	15	3.9	15	79	16	54	9	11	1	77	1.07
13234700--13235329	317	2.0	315	80	7	717	35	14	15	34	1.88
13247599--13247648	21	2.5	20	83	3	55	68	2	2	28	1.12
13247605--13247648	20	2.3	18	84	7	52	68	0	2	29	1.02
13247983--13248026	18	2.3	20	88	7	65	22	38	13	25	1.91
13248566--13248613	10	4.9	9	80	14	51	83	2	14	0	0.74
13248566--13248613	19	2.4	19	86	6	60	83	2	14	0	0.74
13248565--13248613	22	2.1	24	88	7	75	83	2	14	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13249217--13249257	20	2.0	20	85	4	55	58	7	4	29	1.46
13249292--13249351	26	2.4	26	83	10	72	60	13	5	21	1.52
13249310--13249351	12	3.3	14	81	18	56	64	9	4	21	1.42
13249310--13249343	14	2.6	13	90	9	52	67	8	2	20	1.31
13249429--13249498	25	2.9	24	72	8	70	78	2	7	11	1.05
13250707--13250740	12	2.8	13	86	13	54	55	23	5	14	1.61
13251984--13252059	39	1.9	39	86	5	109	32	23	13	30	1.93
13253170--13253627	167	2.8	158	77	7	467	30	8	16	44	1.78
13254509--13254560	21	2.5	20	73	14	52	30	15	7	46	1.74
13255421--13255451	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84